RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 CUL7Q14999 1698 aa33.2■■■□□ 2.9
CDX1-202ENST00000616154 IGF1RP08069 1367 aa33.17■■■□□ 2.9
CDX1-202ENST00000616154 KIAA0586Q9BVV6 1533 aa33.09■■■□□ 2.89
CDX1-202ENST00000616154 KIF13AQ9H1H9 1805 aa33.06■■■□□ 2.88
CDX1-202ENST00000616154 ADCY10Q96PN6 1610 aa32.95■■■□□ 2.87
CDX1-202ENST00000616154 CARMIL1Q5VZK9 1371 aa32.94■■■□□ 2.86
CDX1-202ENST00000616154 MAPKBP1O60336 1514 aa32.92■■■□□ 2.86
CDX1-202ENST00000616154 NPM1P06748 294 aaKnown RBP eCLIP32.88■■■□□ 2.85
CDX1-202ENST00000616154 ABCC10Q5T3U5 1492 aa32.86■■■□□ 2.85
CDX1-202ENST00000616154 DIP2BQ9P265 1576 aa32.81■■■□□ 2.84
CDX1-202ENST00000616154 IQGAP2Q13576 1575 aa32.79■■■□□ 2.84
CDX1-202ENST00000616154 FAM69CQ0P6D2 419 aa32.77■■■□□ 2.84
CDX1-202ENST00000616154 PTPRGP23470 1445 aa32.75■■■□□ 2.83
CDX1-202ENST00000616154 CARMIL2Q6F5E8 1435 aa32.75■■■□□ 2.83
CDX1-202ENST00000616154 AEBP2Q6ZN18 517 aaPredicted RBP32.73■■■□□ 2.83
CDX1-202ENST00000616154 TNIKQ9UKE5 1360 aa32.71■■■□□ 2.83
CDX1-202ENST00000616154 RAPGEF2Q9Y4G8 1499 aa32.67■■■□□ 2.82
CDX1-202ENST00000616154 ABCC2Q92887 1545 aa32.62■■■□□ 2.81
CDX1-202ENST00000616154 DISP1Q96F81 1524 aa32.62■■■□□ 2.81
CDX1-202ENST00000616154 TTBK1Q5TCY1 1321 aaPredicted RBP32.59■■■□□ 2.81
CDX1-202ENST00000616154 UGGT2Q9NYU1 1516 aa32.59■■■□□ 2.81
CDX1-202ENST00000616154 UHRF1BP1LA0JNW5 1464 aa32.58■■■□□ 2.81
CDX1-202ENST00000616154 TSPOAP1O95153 1857 aa32.57■■■□□ 2.8
CDX1-202ENST00000616154 UACAQ9BZF9 1416 aa32.53■■■□□ 2.8
CDX1-202ENST00000616154 KDM6BO15054 1643 aa32.51■■■□□ 2.79
CDX1-202ENST00000616154 KIAA0556O60303 1618 aa32.5■■■□□ 2.79
CDX1-202ENST00000616154 PLB1Q6P1J6 1458 aa32.49■■■□□ 2.79
CDX1-202ENST00000616154 ASXL2Q76L83 1435 aa32.48■■■□□ 2.79
CDX1-202ENST00000616154 CTTNBP2Q8WZ74 1663 aa32.48■■■□□ 2.79
CDX1-202ENST00000616154 GLI2P10070 1586 aa32.45■■■□□ 2.79
CDX1-202ENST00000616154 KDM5BQ9UGL1 1544 aa32.42■■■□□ 2.78
CDX1-202ENST00000616154 PPRC1Q5VV67 1664 aaKnown RBP32.38■■■□□ 2.77
CDX1-202ENST00000616154 ZCCHC11Q5TAX3 1644 aaKnown RBP32.37■■■□□ 2.77
CDX1-202ENST00000616154 PRXQ9BXM0 1461 aa32.36■■■□□ 2.77
CDX1-202ENST00000616154 EPRSP07814 1512 aaKnown RBP32.31■■■□□ 2.76
CDX1-202ENST00000616154 GOLGA3Q08378 1498 aa32.31■■■□□ 2.76
CDX1-202ENST00000616154 MAP3K4Q9Y6R4 1608 aa32.28■■■□□ 2.76
CDX1-202ENST00000616154 ABCA8O94911 1581 aa32.21■■■□□ 2.75
CDX1-202ENST00000616154 WDR7Q9Y4E6 1490 aa32.19■■■□□ 2.74
CDX1-202ENST00000616154 TEX14Q8IWB6 1497 aa32.16■■■□□ 2.74
CDX1-202ENST00000616154 KDM4FA0A1W2PPD8 638 aa32.12■■■□□ 2.73
CDX1-202ENST00000616154 COL17A1Q9UMD9 1497 aaPredicted RBP32.1■■■□□ 2.73
CDX1-202ENST00000616154 CFAP43Q8NDM7 1665 aa32.05■■■□□ 2.72
CDX1-202ENST00000616154 CSRNP3Q8WYN3 585 aa32.03■■■□□ 2.72
CDX1-202ENST00000616154 SAMD9Q5K651 1589 aa32■■■□□ 2.71
CDX1-202ENST00000616154 MAGI3Q5TCQ9 1506 aa31.99■■■□□ 2.71
CDX1-202ENST00000616154 EEA1Q15075 1411 aa31.97■■■□□ 2.71
CDX1-202ENST00000616154 CD109Q6YHK3 1445 aa31.96■■■□□ 2.71
CDX1-202ENST00000616154 FAM9AQ8IZU1 332 aaPredicted RBP31.95■■■□□ 2.7
CDX1-202ENST00000616154 KCNH8Q96L42 1107 aa31.93■■■□□ 2.7
CDX1-202ENST00000616154 P3H3Q8IVL6 736 aa31.92■■■□□ 2.7
CDX1-202ENST00000616154 ADGRL1O94910 1474 aa31.92■■■□□ 2.7
CDX1-202ENST00000616154 ATP10BO94823 1461 aa31.9■■■□□ 2.7
CDX1-202ENST00000616154 RAPGEF6Q8TEU7 1601 aa31.86■■■□□ 2.69
CDX1-202ENST00000616154 ARID3CA6NKF2 412 aa31.81■■■□□ 2.68
CDX1-202ENST00000616154 ABCA9Q8IUA7 1624 aa31.79■■■□□ 2.68
CDX1-202ENST00000616154 KIF21BO75037 1637 aa31.75■■■□□ 2.67
CDX1-202ENST00000616154 ARAP3Q8WWN8 1544 aa31.74■■■□□ 2.67
CDX1-202ENST00000616154 NUP153P49790 1475 aaKnown RBP31.72■■■□□ 2.67
CDX1-202ENST00000616154 FHOD3Q2V2M9 1422 aa31.71■■■□□ 2.67
CDX1-202ENST00000616154 EFCAB5A4FU69 1503 aa31.67■■■□□ 2.66
CDX1-202ENST00000616154 PHLDB1Q86UU1 1377 aa31.66■■■□□ 2.66
CDX1-202ENST00000616154 RANGAP1P46060 587 aaPredicted RBP31.65■■■□□ 2.66
CDX1-202ENST00000616154 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.63■■■□□ 2.65
CDX1-202ENST00000616154 HNRNPUL2Q1KMD3 747 aaKnown RBP31.63■■■□□ 2.65
CDX1-202ENST00000616154 NEO1Q92859 1461 aa31.61■■■□□ 2.65
CDX1-202ENST00000616154 CHIC1Q5VXU3 224 aa31.53■■■□□ 2.64
CDX1-202ENST00000616154 PLEKHD1A6NEE1 506 aa31.49■■■□□ 2.63
CDX1-202ENST00000616154 FRMPD1Q5SYB0 1578 aa31.49■■■□□ 2.63
CDX1-202ENST00000616154 HECW2Q9P2P5 1572 aa31.49■■■□□ 2.63
CDX1-202ENST00000616154 RAPGEF3O95398 923 aa31.47■■■□□ 2.63
CDX1-202ENST00000616154 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.44■■■□□ 2.62
CDX1-202ENST00000616154 CFAP74Q9C0B2 1584 aa31.42■■■□□ 2.62
CDX1-202ENST00000616154 TTC37Q6PGP7 1564 aa31.41■■■□□ 2.62
CDX1-202ENST00000616154 CDK13Q14004 1512 aaKnown RBP31.4■■■□□ 2.62
CDX1-202ENST00000616154 UBTFP17480 764 aaKnown RBP31.39■■■□□ 2.62
CDX1-202ENST00000616154 RICTORQ6R327 1708 aa31.39■■■□□ 2.62
CDX1-202ENST00000616154 ADAMTSL3P82987 1691 aa31.39■■■□□ 2.61
CDX1-202ENST00000616154 FANCAO15360 1455 aa31.37■■■□□ 2.61
CDX1-202ENST00000616154 FMN1Q68DA7 1419 aa31.36■■■□□ 2.61
CDX1-202ENST00000616154 AKNAQ7Z591 1439 aa31.36■■■□□ 2.61
CDX1-202ENST00000616154 DENND4BO75064 1496 aaPredicted RBP31.35■■■□□ 2.61
CDX1-202ENST00000616154 ARHGAP35Q9NRY4 1499 aa31.35■■■□□ 2.61
CDX1-202ENST00000616154 HECW1Q76N89 1606 aa31.35■■■□□ 2.61
CDX1-202ENST00000616154 ARHGEF40Q8TER5 1519 aa31.34■■■□□ 2.61
CDX1-202ENST00000616154 BCORL1Q5H9F3 1711 aa31.32■■■□□ 2.6
CDX1-202ENST00000616154 EHMT2Q96KQ7 1210 aa31.32■■■□□ 2.6
CDX1-202ENST00000616154 PTPRMP28827 1452 aa31.28■■■□□ 2.6
CDX1-202ENST00000616154 ZMYM4Q5VZL5 1548 aa31.27■■■□□ 2.6
CDX1-202ENST00000616154 PLCH2O75038 1416 aa31.23■■■□□ 2.59
CDX1-202ENST00000616154 MADDQ8WXG6 1647 aa31.23■■■□□ 2.59
CDX1-202ENST00000616154 MYO5CQ9NQX4 1742 aa31.21■■■□□ 2.59
CDX1-202ENST00000616154 ARID4BQ4LE39 1312 aaPredicted RBP31.2■■■□□ 2.59
CDX1-202ENST00000616154 ATP1B4Q9UN42 357 aaPredicted RBP31.2■■■□□ 2.58
CDX1-202ENST00000616154 ZFYVE16Q7Z3T8 1539 aa31.18■■■□□ 2.58
CDX1-202ENST00000616154 MAGI2Q86UL8 1455 aa31.18■■■□□ 2.58
CDX1-202ENST00000616154 CDK11AQ9UQ88 783 aaPredicted RBP31.17■■■□□ 2.58
CDX1-202ENST00000616154 LRRIQ1Q96JM4 1722 aa31.17■■■□□ 2.58
CDX1-202ENST00000616154 KIF14Q15058 1648 aa31.15■■■□□ 2.58
CDX1-202ENST00000616154 POGZQ7Z3K3 1410 aa31.14■■■□□ 2.58
Retrieved 100 of 20,778 RNA–protein pairs in 129.3 ms