RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 KDM2AQ9Y2K7 1162 aa12.39□□□□□ -0.43
PDLIM5-222ENST00000615540 CCNB3Q8WWL7 1395 aa12.39□□□□□ -0.43
PDLIM5-222ENST00000615540 FKBP8Q14318 412 aa12.38□□□□□ -0.43
PDLIM5-222ENST00000615540 FAM9BQ8IZU0 186 aa12.38□□□□□ -0.43
PDLIM5-222ENST00000615540 TDRD9Q8NDG6 1382 aaKnown RBP12.37□□□□□ -0.43
PDLIM5-222ENST00000615540 SYNJ1O43426 1573 aa12.36□□□□□ -0.43
PDLIM5-222ENST00000615540 KCNH8Q96L42 1107 aa12.35□□□□□ -0.43
PDLIM5-222ENST00000615540 CADPSQ9ULU8 1353 aa12.34□□□□□ -0.43
PDLIM5-222ENST00000615540 HNRNPUQ00839 825 aaKnown RBP eCLIP12.34□□□□□ -0.43
PDLIM5-222ENST00000615540 FHOD3Q2V2M9 1422 aa12.33□□□□□ -0.44
PDLIM5-222ENST00000615540 UNC13AQ9UPW8 1703 aa12.32□□□□□ -0.44
PDLIM5-222ENST00000615540 CHGAP10645 457 aaKnown RBP12.31□□□□□ -0.44
PDLIM5-222ENST00000615540 FHAD1B1AJZ9 1412 aa12.31□□□□□ -0.44
PDLIM5-222ENST00000615540 ARHGAP35Q9NRY4 1499 aa12.31□□□□□ -0.44
PDLIM5-222ENST00000615540 SALL2Q9Y467 1007 aaPredicted RBP12.31□□□□□ -0.44
PDLIM5-222ENST00000615540 IRX6P78412 446 aaPredicted RBP12.3□□□□□ -0.44
PDLIM5-222ENST00000615540 FANCD2Q9BXW9 1451 aa12.3□□□□□ -0.44
PDLIM5-222ENST00000615540 RAD54L2Q9Y4B4 1467 aa12.27□□□□□ -0.44
PDLIM5-222ENST00000615540 CFDP1Q9UEE9 299 aaPredicted RBP12.27□□□□□ -0.45
PDLIM5-222ENST00000615540 FOXD1Q16676 465 aa12.27□□□□□ -0.45
PDLIM5-222ENST00000615540 TSPY4P0CV99 314 aa12.26□□□□□ -0.45
PDLIM5-222ENST00000615540 TSPY10P0CW01 314 aa12.26□□□□□ -0.45
PDLIM5-222ENST00000615540 DAXXQ9UER7 740 aaPredicted RBP12.26□□□□□ -0.45
PDLIM5-222ENST00000615540 SETD5Q9C0A6 1442 aa12.26□□□□□ -0.45
PDLIM5-222ENST00000615540 RAB3GAP2Q9H2M9 1393 aa12.26□□□□□ -0.45
PDLIM5-222ENST00000615540 FGD5Q6ZNL6 1462 aa12.26□□□□□ -0.45
PDLIM5-222ENST00000615540 PDS5BQ9NTI5 1447 aa12.26□□□□□ -0.45
PDLIM5-222ENST00000615540 PLEKHD1A6NEE1 506 aa12.25□□□□□ -0.45
PDLIM5-222ENST00000615540 BICRAQ9NZM4 1560 aa12.25□□□□□ -0.45
PDLIM5-222ENST00000615540 KIF21BO75037 1637 aa12.24□□□□□ -0.45
PDLIM5-222ENST00000615540 BCL11AQ9H165 835 aa12.24□□□□□ -0.45
PDLIM5-222ENST00000615540 RGL3Q3MIN7 710 aa12.22□□□□□ -0.45
PDLIM5-222ENST00000615540 CLSPNQ9HAW4 1339 aa12.22□□□□□ -0.45
PDLIM5-222ENST00000615540 EIF4G2P78344 907 aaKnown RBP eCLIP12.22□□□□□ -0.45
PDLIM5-222ENST00000615540 MRS2Q9HD23 443 aa12.22□□□□□ -0.45
PDLIM5-222ENST00000615540 NESP48681 1621 aa12.18□□□□□ -0.46
PDLIM5-222ENST00000615540 NCAPD3P42695 1498 aa12.18□□□□□ -0.46
PDLIM5-222ENST00000615540 NPM1P06748 294 aaKnown RBP eCLIP12.17□□□□□ -0.46
PDLIM5-222ENST00000615540 CC2D2AQ9P2K1 1620 aa12.17□□□□□ -0.46
PDLIM5-222ENST00000615540 CUX1P39880 1505 aa12.17□□□□□ -0.46
PDLIM5-222ENST00000615540 CANXP27824 592 aaKnown RBP12.16□□□□□ -0.46
PDLIM5-222ENST00000615540 IGF1RP08069 1367 aa12.16□□□□□ -0.46
PDLIM5-222ENST00000615540 PLEKHG5O94827 1062 aa12.16□□□□□ -0.46
PDLIM5-222ENST00000615540 TOP2BQ02880 1626 aa12.15□□□□□ -0.46
PDLIM5-222ENST00000615540 FMN1Q68DA7 1419 aa12.15□□□□□ -0.46
PDLIM5-222ENST00000615540 TMC1Q8TDI8 760 aa12.15□□□□□ -0.46
PDLIM5-222ENST00000615540 MYT1Q01538 1121 aa12.15□□□□□ -0.47
PDLIM5-222ENST00000615540 DHX57Q6P158 1386 aaKnown RBP12.14□□□□□ -0.47
PDLIM5-222ENST00000615540 NPM2Q86SE8 214 aaKnown RBP12.14□□□□□ -0.47
PDLIM5-222ENST00000615540 ARAP1Q96P48 1450 aa12.12□□□□□ -0.47
PDLIM5-222ENST00000615540 STAG3Q9UJ98 1225 aa12.12□□□□□ -0.47
PDLIM5-222ENST00000615540 CARD11Q9BXL7 1154 aa12.11□□□□□ -0.47
PDLIM5-222ENST00000615540 HSPA5P11021 654 aaKnown RBP12.1□□□□□ -0.47
PDLIM5-222ENST00000615540 CFTRP13569 1480 aa12.09□□□□□ -0.47
PDLIM5-222ENST00000615540 GAPVD1Q14C86 1478 aa12.08□□□□□ -0.48
PDLIM5-222ENST00000615540 SLC24A1O60721 1099 aa12.08□□□□□ -0.48
PDLIM5-222ENST00000615540 DNAJC5BQ9UF47 199 aa12.07□□□□□ -0.48
PDLIM5-222ENST00000615540 AQRO60306 1485 aaKnown RBP eCLIP12.07□□□□□ -0.48
PDLIM5-222ENST00000615540 HMGXB3Q12766 1538 aa12.07□□□□□ -0.48
PDLIM5-222ENST00000615540 MPHOSPH9Q99550 1183 aa12.06□□□□□ -0.48
PDLIM5-222ENST00000615540 SUPT16HQ9Y5B9 1047 aaKnown RBP12.06□□□□□ -0.48
PDLIM5-222ENST00000615540 PRDM2Q13029 1718 aa12.06□□□□□ -0.48
PDLIM5-222ENST00000615540 RTL5Q5HYW3 569 aaPredicted RBP12.05□□□□□ -0.48
PDLIM5-222ENST00000615540 DCAF11Q8TEB1 546 aa12.05□□□□□ -0.48
PDLIM5-222ENST00000615540 ERICH3Q5RHP9 1530 aa12.05□□□□□ -0.48
PDLIM5-222ENST00000615540 PHLDB1Q86UU1 1377 aa12.05□□□□□ -0.48
PDLIM5-222ENST00000615540 PKD2Q13563 968 aa12.04□□□□□ -0.48
PDLIM5-222ENST00000615540 HNRNPMP52272 730 aaKnown RBP eCLIP12.04□□□□□ -0.485e-6■■■□□ 18.5
PDLIM5-222ENST00000615540 ESF1Q9H501 851 aaKnown RBP12.03□□□□□ -0.48
PDLIM5-222ENST00000615540 WDR43Q15061 677 aaKnown RBP eCLIP12.03□□□□□ -0.48
PDLIM5-222ENST00000615540 CC2D1BQ5T0F9 858 aaKnown RBP12.03□□□□□ -0.48
PDLIM5-222ENST00000615540 CARMIL2Q6F5E8 1435 aa12.02□□□□□ -0.48
PDLIM5-222ENST00000615540 LRRC9Q6ZRR7 1453 aa12.02□□□□□ -0.49
PDLIM5-222ENST00000615540 CCDC136Q96JN2 1154 aa12□□□□□ -0.49
PDLIM5-222ENST00000615540 CCDC18Q5T9S5 1454 aa11.99□□□□□ -0.49
PDLIM5-222ENST00000615540 PRXQ9BXM0 1461 aa11.99□□□□□ -0.49
PDLIM5-222ENST00000615540 TOPBP1Q92547 1522 aa11.98□□□□□ -0.49
PDLIM5-222ENST00000615540 PPP1R15AO75807 674 aaPredicted RBP11.98□□□□□ -0.49
PDLIM5-222ENST00000615540 ANP32AP39687 249 aaKnown RBP11.97□□□□□ -0.49
PDLIM5-222ENST00000615540 POLA1P09884 1462 aaPredicted RBP11.96□□□□□ -0.49
PDLIM5-222ENST00000615540 NUP155O75694 1391 aa11.96□□□□□ -0.49
PDLIM5-222ENST00000615540 L3MBTL2Q969R5 705 aa11.96□□□□□ -0.5
PDLIM5-222ENST00000615540 NEFMP07197 916 aa11.95□□□□□ -0.5
PDLIM5-222ENST00000615540 JPH4Q96JJ6 628 aa11.95□□□□□ -0.5
PDLIM5-222ENST00000615540 ZNF644Q9H582 1327 aaPredicted RBP11.95□□□□□ -0.5
PDLIM5-222ENST00000615540 PEG3Q9GZU2 1588 aa11.95□□□□□ -0.5
PDLIM5-222ENST00000615540 TNNT2P45379 298 aaPredicted RBP11.94□□□□□ -0.5
PDLIM5-222ENST00000615540 FGD6Q6ZV73 1430 aa11.94□□□□□ -0.5
PDLIM5-222ENST00000615540 DNMBPQ6XZF7 1577 aa11.93□□□□□ -0.5
PDLIM5-222ENST00000615540 ANKRD30AQ9BXX3 1397 aa11.93□□□□□ -0.5
PDLIM5-222ENST00000615540 CASKIN1Q8WXD9 1431 aa11.92□□□□□ -0.5
PDLIM5-222ENST00000615540 NCOA2Q15596 1464 aa11.92□□□□□ -0.5
PDLIM5-222ENST00000615540 BIVM-ERCC5R4GMW8 1640 aa11.92□□□□□ -0.5
PDLIM5-222ENST00000615540 TIMELESSQ9UNS1 1208 aa11.92□□□□□ -0.5
PDLIM5-222ENST00000615540 KNSTRNQ9Y448 316 aa11.91□□□□□ -0.5
PDLIM5-222ENST00000615540 ROCK2O75116 1388 aaKnown RBP11.91□□□□□ -0.5
PDLIM5-222ENST00000615540 PCF11O94913 1555 aaKnown RBP11.91□□□□□ -0.5
PDLIM5-222ENST00000615540 TIAM1Q13009 1591 aa11.91□□□□□ -0.5
PDLIM5-222ENST00000615540 NBR1Q14596 966 aa11.91□□□□□ -0.5
PDLIM5-222ENST00000615540 RRBP1Q9P2E9 1410 aaKnown RBP11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms