RNA–Protein interactions for RNA: ENST00000613744.4

POLR2J3-220, Transcript of RNA polymerase II subunit J3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene POLR2J3, Length 2,096 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3-220ENST00000613744 SYNJ2O15056 1496 aa33.65■■■□□ 2.98
POLR2J3-220ENST00000613744 RAPGEF2Q9Y4G8 1499 aa33.64■■■□□ 2.98
POLR2J3-220ENST00000613744 CHD1O14646 1710 aa33.58■■■□□ 2.97
POLR2J3-220ENST00000613744 KIF21BO75037 1637 aa33.56■■■□□ 2.96
POLR2J3-220ENST00000613744 GRIN2AQ12879 1464 aa33.55■■■□□ 2.96
POLR2J3-220ENST00000613744 UBTFP17480 764 aaKnown RBP33.51■■■□□ 2.95
POLR2J3-220ENST00000613744 GOLGA3Q08378 1498 aa33.48■■■□□ 2.95
POLR2J3-220ENST00000613744 CENPBP07199 599 aaPredicted RBP33.39■■■□□ 2.94
POLR2J3-220ENST00000613744 CEP170Q5SW79 1584 aa33.39■■■□□ 2.94
POLR2J3-220ENST00000613744 NEUROD1Q13562 356 aa33.37■■■□□ 2.93
POLR2J3-220ENST00000613744 RANGAP1P46060 587 aaPredicted RBP33.36■■■□□ 2.93
POLR2J3-220ENST00000613744 OSCARQ8IYS5 282 aa33.33■■■□□ 2.93
POLR2J3-220ENST00000613744 NUP160Q12769 1436 aa33.32■■■□□ 2.92
POLR2J3-220ENST00000613744 CTTNBP2Q8WZ74 1663 aa33.24■■■□□ 2.91
POLR2J3-220ENST00000613744 KIAA0586Q9BVV6 1533 aa33.21■■■□□ 2.91
POLR2J3-220ENST00000613744 TNIKQ9UKE5 1360 aa33.21■■■□□ 2.91
POLR2J3-220ENST00000613744 GTF3C3Q9Y5Q9 886 aa33.19■■■□□ 2.9
POLR2J3-220ENST00000613744 IQGAP2Q13576 1575 aa33.16■■■□□ 2.9
POLR2J3-220ENST00000613744 CLASP1Q7Z460 1538 aa33.14■■■□□ 2.9
POLR2J3-220ENST00000613744 JPH4Q96JJ6 628 aa33.13■■■□□ 2.89
POLR2J3-220ENST00000613744 DIEXFQ68CQ4 756 aaKnown RBP33.07■■■□□ 2.88
POLR2J3-220ENST00000613744 P3H3Q8IVL6 736 aa33.05■■■□□ 2.88
POLR2J3-220ENST00000613744 CEP162Q5TB80 1403 aa33.03■■■□□ 2.88
POLR2J3-220ENST00000613744 CCER1Q8TC90 406 aaPredicted RBP32.99■■■□□ 2.87
POLR2J3-220ENST00000613744 PRG4Q92954 1404 aaPredicted RBP32.98■■■□□ 2.87
POLR2J3-220ENST00000613744 CLIP1P30622 1438 aa32.96■■■□□ 2.87
POLR2J3-220ENST00000613744 TTBK1Q5TCY1 1321 aaPredicted RBP32.96■■■□□ 2.87
POLR2J3-220ENST00000613744 UGGT2Q9NYU1 1516 aa32.96■■■□□ 2.87
POLR2J3-220ENST00000613744 SHROOM2Q13796 1616 aa32.95■■■□□ 2.86
POLR2J3-220ENST00000613744 ERCC6L2Q5T890 1561 aa32.93■■■□□ 2.86
POLR2J3-220ENST00000613744 DISP1Q96F81 1524 aa32.9■■■□□ 2.86
POLR2J3-220ENST00000613744 ARHGAP35Q9NRY4 1499 aa32.89■■■□□ 2.86
POLR2J3-220ENST00000613744 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.87■■■□□ 2.85
POLR2J3-220ENST00000613744 FHOD3Q2V2M9 1422 aa32.85■■■□□ 2.85
POLR2J3-220ENST00000613744 SAMD9Q5K651 1589 aa32.84■■■□□ 2.85
POLR2J3-220ENST00000613744 KIAA0556O60303 1618 aa32.84■■■□□ 2.85
POLR2J3-220ENST00000613744 CARMIL2Q6F5E8 1435 aa32.84■■■□□ 2.85
POLR2J3-220ENST00000613744 EFCAB5A4FU69 1503 aa32.8■■■□□ 2.84
POLR2J3-220ENST00000613744 ARAP1Q96P48 1450 aa32.78■■■□□ 2.84
POLR2J3-220ENST00000613744 ARHGEF11O15085 1522 aa32.75■■■□□ 2.83
POLR2J3-220ENST00000613744 RIMBP3CA6NJZ7 1639 aa32.68■■■□□ 2.82
POLR2J3-220ENST00000613744 RIMBP3BA6NNM3 1639 aa32.68■■■□□ 2.82
POLR2J3-220ENST00000613744 RIMBP3Q9UFD9 1639 aa32.68■■■□□ 2.82
POLR2J3-220ENST00000613744 PTPRGP23470 1445 aa32.66■■■□□ 2.82
POLR2J3-220ENST00000613744 DNAJC5Q9H3Z4 198 aa32.62■■■□□ 2.81
POLR2J3-220ENST00000613744 ATP1B4Q9UN42 357 aaPredicted RBP32.59■■■□□ 2.81
POLR2J3-220ENST00000613744 ZNF316A6NFI3 1004 aaPredicted RBP32.58■■■□□ 2.81
POLR2J3-220ENST00000613744 CYB5RLQ6IPT4 315 aa32.57■■■□□ 2.8
POLR2J3-220ENST00000613744 PLB1Q6P1J6 1458 aa32.55■■■□□ 2.8
POLR2J3-220ENST00000613744 FMN1Q68DA7 1419 aa32.54■■■□□ 2.8
POLR2J3-220ENST00000613744 ARID3CA6NKF2 412 aa32.52■■■□□ 2.8
POLR2J3-220ENST00000613744 VPS8Q8N3P4 1428 aa32.51■■■□□ 2.79
POLR2J3-220ENST00000613744 PCF11O94913 1555 aaKnown RBP32.46■■■□□ 2.79
POLR2J3-220ENST00000613744 UACAQ9BZF9 1416 aa32.44■■■□□ 2.78
POLR2J3-220ENST00000613744 RAPGEF6Q8TEU7 1601 aa32.42■■■□□ 2.78
POLR2J3-220ENST00000613744 ABCA8O94911 1581 aa32.41■■■□□ 2.78
POLR2J3-220ENST00000613744 CASKIN1Q8WXD9 1431 aa32.39■■■□□ 2.78
POLR2J3-220ENST00000613744 NUP153P49790 1475 aaKnown RBP32.34■■■□□ 2.77
POLR2J3-220ENST00000613744 CLSPNQ9HAW4 1339 aa32.34■■■□□ 2.77
POLR2J3-220ENST00000613744 ADCY10Q96PN6 1610 aa32.34■■■□□ 2.77
POLR2J3-220ENST00000613744 FYCO1Q9BQS8 1478 aa32.33■■■□□ 2.77
POLR2J3-220ENST00000613744 ABCC2Q92887 1545 aa32.33■■■□□ 2.77
POLR2J3-220ENST00000613744 HNRNPUL2Q1KMD3 747 aaKnown RBP32.32■■■□□ 2.76
POLR2J3-220ENST00000613744 HECW1Q76N89 1606 aa32.3■■■□□ 2.76
POLR2J3-220ENST00000613744 LRRIQ1Q96JM4 1722 aa32.28■■■□□ 2.76
POLR2J3-220ENST00000613744 CDK13Q14004 1512 aaKnown RBP32.27■■■□□ 2.76
POLR2J3-220ENST00000613744 UHRF1BP1LA0JNW5 1464 aa32.26■■■□□ 2.75
POLR2J3-220ENST00000613744 APLP2Q06481 763 aa32.25■■■□□ 2.75
POLR2J3-220ENST00000613744 EPRSP07814 1512 aaKnown RBP32.24■■■□□ 2.75
POLR2J3-220ENST00000613744 ATP10BO94823 1461 aa32.22■■■□□ 2.75
POLR2J3-220ENST00000613744 NPM1P06748 294 aaKnown RBP eCLIP32.18■■■□□ 2.74
POLR2J3-220ENST00000613744 ZCCHC11Q5TAX3 1644 aaKnown RBP32.16■■■□□ 2.74
POLR2J3-220ENST00000613744 KDM5BQ9UGL1 1544 aa32.15■■■□□ 2.74
POLR2J3-220ENST00000613744 CCDC18Q5T9S5 1454 aa32.13■■■□□ 2.73
POLR2J3-220ENST00000613744 KANK4Q5T7N3 995 aaPredicted RBP32.12■■■□□ 2.73
POLR2J3-220ENST00000613744 MIER1Q8N108 512 aa32.12■■■□□ 2.73
POLR2J3-220ENST00000613744 YTHDC1Q96MU7 727 aaKnown RBP32.12■■■□□ 2.73
POLR2J3-220ENST00000613744 TIAM1Q13009 1591 aa32.1■■■□□ 2.73
POLR2J3-220ENST00000613744 CFAP43Q8NDM7 1665 aa32.06■■■□□ 2.72
POLR2J3-220ENST00000613744 MAGI3Q5TCQ9 1506 aa32.04■■■□□ 2.72
POLR2J3-220ENST00000613744 PLEKHD1A6NEE1 506 aa32.04■■■□□ 2.72
POLR2J3-220ENST00000613744 CDK11AQ9UQ88 783 aaPredicted RBP32.03■■■□□ 2.72
POLR2J3-220ENST00000613744 MTUS2Q5JR59 1369 aa32.01■■■□□ 2.71
POLR2J3-220ENST00000613744 KCNH8Q96L42 1107 aa32.01■■■□□ 2.71
POLR2J3-220ENST00000613744 ASXL2Q76L83 1435 aa32■■■□□ 2.71
POLR2J3-220ENST00000613744 MAP3K1Q13233 1512 aa31.99■■■□□ 2.71
POLR2J3-220ENST00000613744 LRRC9Q6ZRR7 1453 aa31.97■■■□□ 2.71
POLR2J3-220ENST00000613744 TROQ12816 1431 aaPredicted RBP31.91■■■□□ 2.7
POLR2J3-220ENST00000613744 WDR7Q9Y4E6 1490 aa31.91■■■□□ 2.7
POLR2J3-220ENST00000613744 MAPKBP1O60336 1514 aa31.87■■■□□ 2.69
POLR2J3-220ENST00000613744 EHBP1L1Q8N3D4 1523 aa31.87■■■□□ 2.69
POLR2J3-220ENST00000613744 KIF14Q15058 1648 aa31.85■■■□□ 2.69
POLR2J3-220ENST00000613744 NCOA2Q15596 1464 aa31.77■■■□□ 2.68
POLR2J3-220ENST00000613744 SUPT6HQ7KZ85 1726 aaKnown RBP31.76■■■□□ 2.68
POLR2J3-220ENST00000613744 SUPT16HQ9Y5B9 1047 aaKnown RBP31.75■■■□□ 2.67
POLR2J3-220ENST00000613744 FAM69CQ0P6D2 419 aa31.74■■■□□ 2.67
POLR2J3-220ENST00000613744 ANP32EQ9BTT0 268 aa31.74■■■□□ 2.67
POLR2J3-220ENST00000613744 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.73■■■□□ 2.67
POLR2J3-220ENST00000613744 TTC37Q6PGP7 1564 aa31.71■■■□□ 2.67
POLR2J3-220ENST00000613744 PHLDB1Q86UU1 1377 aa31.7■■■□□ 2.66
Retrieved 100 of 20,778 RNA–protein pairs in 7 ms