RNA–Protein interactions for RNA: ENST00000611833.4

NEK3-206, Transcript of NIMA related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene NEK3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-206ENST00000611833 CLSPNQ9HAW4 1339 aa25.44■■□□□ 1.66
NEK3-206ENST00000611833 FHAD1B1AJZ9 1412 aa25.42■■□□□ 1.66
NEK3-206ENST00000611833 WDR97A6NE52 1622 aa25.42■■□□□ 1.66
NEK3-206ENST00000611833 LRRC9Q6ZRR7 1453 aa25.4■■□□□ 1.66
NEK3-206ENST00000611833 PCF11O94913 1555 aaKnown RBP25.39■■□□□ 1.66
NEK3-206ENST00000611833 P3H3Q8IVL6 736 aa25.38■■□□□ 1.65
NEK3-206ENST00000611833 CFAP43Q8NDM7 1665 aa25.36■■□□□ 1.65
NEK3-206ENST00000611833 CTTNBP2Q8WZ74 1663 aa25.36■■□□□ 1.65
NEK3-206ENST00000611833 DNAJC5BQ9UF47 199 aa25.36■■□□□ 1.65
NEK3-206ENST00000611833 FHOD3Q2V2M9 1422 aa25.35■■□□□ 1.65
NEK3-206ENST00000611833 EFCAB5A4FU69 1503 aa25.34■■□□□ 1.65
NEK3-206ENST00000611833 PDS5BQ9NTI5 1447 aa25.32■■□□□ 1.64
NEK3-206ENST00000611833 ITGAEP38570 1179 aa25.32■■□□□ 1.64
NEK3-206ENST00000611833 ABCA5Q8WWZ7 1642 aa25.31■■□□□ 1.64
NEK3-206ENST00000611833 PHLDB1Q86UU1 1377 aa25.3■■□□□ 1.64
NEK3-206ENST00000611833 TDRD9Q8NDG6 1382 aaKnown RBP25.28■■□□□ 1.64
NEK3-206ENST00000611833 MIER1Q8N108 512 aa25.28■■□□□ 1.64
NEK3-206ENST00000611833 KIF21AQ7Z4S6 1674 aa25.27■■□□□ 1.64
NEK3-206ENST00000611833 FYCO1Q9BQS8 1478 aa25.27■■□□□ 1.64
NEK3-206ENST00000611833 GAPVD1Q14C86 1478 aa25.24■■□□□ 1.63
NEK3-206ENST00000611833 CASKIN1Q8WXD9 1431 aa25.24■■□□□ 1.63
NEK3-206ENST00000611833 ATP1B4Q9UN42 357 aaPredicted RBP25.24■■□□□ 1.63
NEK3-206ENST00000611833 GTF3C3Q9Y5Q9 886 aa25.24■■□□□ 1.63
NEK3-206ENST00000611833 AQRO60306 1485 aaKnown RBP eCLIP25.23■■□□□ 1.633e-7■■■□□ 19
NEK3-206ENST00000611833 RAB3GAP2Q9H2M9 1393 aa25.22■■□□□ 1.63
NEK3-206ENST00000611833 YTHDC1Q96MU7 727 aaKnown RBP25.21■■□□□ 1.63
NEK3-206ENST00000611833 FMN1Q68DA7 1419 aa25.17■■□□□ 1.62
NEK3-206ENST00000611833 TARBP1Q13395 1621 aaKnown RBP25.15■■□□□ 1.62
NEK3-206ENST00000611833 SNAPC4Q5SXM2 1469 aa25.15■■□□□ 1.62
NEK3-206ENST00000611833 SAMD9Q5K651 1589 aa25.14■■□□□ 1.62
NEK3-206ENST00000611833 FAM50AQ14320 339 aaKnown RBP25.14■■□□□ 1.61
NEK3-206ENST00000611833 SETD5Q9C0A6 1442 aa25.14■■□□□ 1.61
NEK3-206ENST00000611833 PELP1Q8IZL8 1130 aaKnown RBP25.12■■□□□ 1.61
NEK3-206ENST00000611833 MAPKBP1O60336 1514 aa25.11■■□□□ 1.61
NEK3-206ENST00000611833 LRRIQ1Q96JM4 1722 aa25.04■■□□□ 1.6
NEK3-206ENST00000611833 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.03■■□□□ 1.6
NEK3-206ENST00000611833 PBRM1Q86U86 1689 aa25.01■■□□□ 1.59
NEK3-206ENST00000611833 GRIN2BQ13224 1484 aa25■■□□□ 1.59
NEK3-206ENST00000611833 FGD6Q6ZV73 1430 aa24.98■■□□□ 1.59
NEK3-206ENST00000611833 MTUS2Q5JR59 1369 aa24.98■■□□□ 1.59
NEK3-206ENST00000611833 THOC2Q8NI27 1593 aaKnown RBP24.96■■□□□ 1.59
NEK3-206ENST00000611833 MRC2Q9UBG0 1479 aa24.96■■□□□ 1.59
NEK3-206ENST00000611833 ADAMTS12P58397 1594 aa24.91■■□□□ 1.58
NEK3-206ENST00000611833 NCOA2Q15596 1464 aa24.9■■□□□ 1.58
NEK3-206ENST00000611833 IQGAP2Q13576 1575 aa24.87■■□□□ 1.57
NEK3-206ENST00000611833 EHBP1L1Q8N3D4 1523 aa24.87■■□□□ 1.57
NEK3-206ENST00000611833 SIN3AQ96ST3 1273 aa24.86■■□□□ 1.57
NEK3-206ENST00000611833 SUPT6HQ7KZ85 1726 aaKnown RBP24.86■■□□□ 1.57
NEK3-206ENST00000611833 MYOM3Q5VTT5 1437 aa24.85■■□□□ 1.57
NEK3-206ENST00000611833 PTPRKQ15262 1439 aa24.84■■□□□ 1.57
NEK3-206ENST00000611833 MAGI3Q5TCQ9 1506 aa24.83■■□□□ 1.57
NEK3-206ENST00000611833 CCDC18Q5T9S5 1454 aa24.81■■□□□ 1.56
NEK3-206ENST00000611833 UGGT2Q9NYU1 1516 aa24.8■■□□□ 1.56
NEK3-206ENST00000611833 ARHGEF11O15085 1522 aa24.8■■□□□ 1.56
NEK3-206ENST00000611833 ZNF608Q9ULD9 1512 aaPredicted RBP24.8■■□□□ 1.56
NEK3-206ENST00000611833 HFM1A2PYH4 1435 aa24.79■■□□□ 1.56
NEK3-206ENST00000611833 HECW1Q76N89 1606 aa24.79■■□□□ 1.56
NEK3-206ENST00000611833 IFT140Q96RY7 1462 aa24.78■■□□□ 1.56
NEK3-206ENST00000611833 WDR62O43379 1518 aa24.78■■□□□ 1.56
NEK3-206ENST00000611833 PTPN23Q9H3S7 1636 aa24.76■■□□□ 1.55
NEK3-206ENST00000611833 TIMELESSQ9UNS1 1208 aa24.74■■□□□ 1.55
NEK3-206ENST00000611833 EPRSP07814 1512 aaKnown RBP24.73■■□□□ 1.55
NEK3-206ENST00000611833 NAIPQ13075 1403 aa24.72■■□□□ 1.55
NEK3-206ENST00000611833 UACAQ9BZF9 1416 aa24.7■■□□□ 1.54
NEK3-206ENST00000611833 CDK13Q14004 1512 aaKnown RBP24.69■■□□□ 1.54
NEK3-206ENST00000611833 TCOF1Q13428 1488 aaKnown RBP24.66■■□□□ 1.54
NEK3-206ENST00000611833 PPP1R15AO75807 674 aaPredicted RBP24.64■■□□□ 1.54
NEK3-206ENST00000611833 EIF4G3O43432 1585 aaKnown RBP24.64■■□□□ 1.54
NEK3-206ENST00000611833 KIAA0586Q9BVV6 1533 aa24.64■■□□□ 1.53
NEK3-206ENST00000611833 DISP1Q96F81 1524 aa24.62■■□□□ 1.53
NEK3-206ENST00000611833 KIAA0556O60303 1618 aa24.62■■□□□ 1.53
NEK3-206ENST00000611833 GRIN2AQ12879 1464 aa24.6■■□□□ 1.53
NEK3-206ENST00000611833 ARID3CA6NKF2 412 aa24.6■■□□□ 1.53
NEK3-206ENST00000611833 MIA2Q96PC5 1412 aa24.57■■□□□ 1.52
NEK3-206ENST00000611833 GCC2Q8IWJ2 1684 aa24.57■■□□□ 1.52
NEK3-206ENST00000611833 DDX10Q13206 875 aaKnown RBP24.56■■□□□ 1.52
NEK3-206ENST00000611833 TONSLQ96HA7 1378 aa24.56■■□□□ 1.52
NEK3-206ENST00000611833 RRP7BPQ9NSQ0 103 aa24.55■■□□□ 1.52
NEK3-206ENST00000611833 ERCC6Q03468 1493 aa24.55■■□□□ 1.52
NEK3-206ENST00000611833 CHIC2Q9UKJ5 165 aa24.55■■□□□ 1.52
NEK3-206ENST00000611833 AKNAQ7Z591 1439 aa24.52■■□□□ 1.52
NEK3-206ENST00000611833 NUP153P49790 1475 aaKnown RBP24.52■■□□□ 1.52
NEK3-206ENST00000611833 RAPGEF6Q8TEU7 1601 aa24.5■■□□□ 1.51
NEK3-206ENST00000611833 KDM6BO15054 1643 aa24.49■■□□□ 1.51
NEK3-206ENST00000611833 MAGI1Q96QZ7 1491 aaPredicted RBP24.49■■□□□ 1.51
NEK3-206ENST00000611833 HIRIP3Q9BW71 556 aaPredicted RBP24.49■■□□□ 1.51
NEK3-206ENST00000611833 KCNH8Q96L42 1107 aa24.47■■□□□ 1.51
NEK3-206ENST00000611833 DENND4BO75064 1496 aaPredicted RBP24.46■■□□□ 1.51
NEK3-206ENST00000611833 CEP170Q5SW79 1584 aa24.45■■□□□ 1.5
NEK3-206ENST00000611833 KDM5BQ9UGL1 1544 aa24.44■■□□□ 1.5
NEK3-206ENST00000611833 SYNJ2O15056 1496 aa24.43■■□□□ 1.5
NEK3-206ENST00000611833 CHMP7Q8WUX9 453 aaPredicted RBP24.42■■□□□ 1.5
NEK3-206ENST00000611833 TRIM52Q96A61 297 aa24.4■■□□□ 1.5
NEK3-206ENST00000611833 DAPK1P53355 1430 aa24.4■■□□□ 1.5
NEK3-206ENST00000611833 DNMT1P26358 1616 aaKnown RBP24.38■■□□□ 1.49
NEK3-206ENST00000611833 CDK11AQ9UQ88 783 aaPredicted RBP24.36■■□□□ 1.49
NEK3-206ENST00000611833 SUPT16HQ9Y5B9 1047 aaKnown RBP24.36■■□□□ 1.49
NEK3-206ENST00000611833 ABCC5O15440 1437 aa24.36■■□□□ 1.49
NEK3-206ENST00000611833 ZNF644Q9H582 1327 aaPredicted RBP24.35■■□□□ 1.49
NEK3-206ENST00000611833 PLB1Q6P1J6 1458 aa24.35■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 118.6 ms