RNA–Protein interactions for RNA: ENST00000611833.4

NEK3-206, Transcript of NIMA related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene NEK3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-206ENST00000611833 NISCHQ9Y2I1 1504 aa36.38■■■■□ 3.41
NEK3-206ENST00000611833 CCDC180Q9P1Z9 1646 aa31.1■■■□□ 2.57
NEK3-206ENST00000611833 ZCCHC6Q5VYS8 1495 aaKnown RBP30.75■■■□□ 2.51
NEK3-206ENST00000611833 SHROOM4Q9ULL8 1493 aa30.7■■■□□ 2.5
NEK3-206ENST00000611833 DCAF8L2P0C7V8 631 aa30.03■■■□□ 2.4
NEK3-206ENST00000611833 SUPT5HO00267 1087 aaKnown RBP29.99■■■□□ 2.39
NEK3-206ENST00000611833 DCAF1Q9Y4B6 1507 aa29.92■■■□□ 2.38
NEK3-206ENST00000611833 MYO15BQ96JP2 1530 aa29.15■■■□□ 2.26
NEK3-206ENST00000611833 CHIC1Q5VXU3 224 aa29.12■■■□□ 2.25
NEK3-206ENST00000611833 SCRIBQ14160 1630 aa29.01■■■□□ 2.24
NEK3-206ENST00000611833 ABCC9O60706 1549 aa28.98■■■□□ 2.23
NEK3-206ENST00000611833 NACADO15069 1562 aa28.77■■■□□ 2.2
NEK3-206ENST00000611833 RSF1Q96T23 1441 aaPredicted RBP28.67■■■□□ 2.18
NEK3-206ENST00000611833 RB1CC1Q8TDY2 1594 aa28.35■■■□□ 2.13
NEK3-206ENST00000611833 CECR2Q9BXF3 1484 aa28.35■■■□□ 2.13
NEK3-206ENST00000611833 MROH2BQ7Z745 1585 aa28.25■■■□□ 2.11
NEK3-206ENST00000611833 LOC105371045A0A1W2PR82 267 aa28.19■■■□□ 2.1
NEK3-206ENST00000611833 WIZO95785 1651 aa28.09■■■□□ 2.09
NEK3-206ENST00000611833 PCGF6Q9BYE7 350 aa28.06■■■□□ 2.08
NEK3-206ENST00000611833 HRCP23327 699 aa28.01■■■□□ 2.07
NEK3-206ENST00000611833 TRIM41Q8WV44 630 aa28■■■□□ 2.07
NEK3-206ENST00000611833 BAZ1AQ9NRL2 1556 aaPredicted RBP27.97■■■□□ 2.07
NEK3-206ENST00000611833 UNC13AQ9UPW8 1703 aa27.94■■■□□ 2.06
NEK3-206ENST00000611833 SMARCA4P51532 1647 aa27.76■■■□□ 2.03
NEK3-206ENST00000611833 FAM9AQ8IZU1 332 aaPredicted RBP27.69■■■□□ 2.02
NEK3-206ENST00000611833 EIF4G1Q04637 1599 aaKnown RBP27.68■■■□□ 2.02
NEK3-206ENST00000611833 TOP2AP11388 1531 aaKnown RBP27.67■■■□□ 2.02
NEK3-206ENST00000611833 TRIM26Q12899 539 aaPredicted RBP27.6■■■□□ 2.01
NEK3-206ENST00000611833 BICRAQ9NZM4 1560 aa27.58■■■□□ 2.01
NEK3-206ENST00000611833 SMARCA2P51531 1590 aa27.51■■■□□ 2
NEK3-206ENST00000611833 CCDC88BA6NC98 1476 aa27.51■■□□□ 1.99
NEK3-206ENST00000611833 PABPN1Q86U42 306 aaKnown RBP eCLIP27.5■■□□□ 1.998e-7■■□□□ 13.3
NEK3-206ENST00000611833 EHMT2Q96KQ7 1210 aa27.41■■□□□ 1.98
NEK3-206ENST00000611833 PPARGC1BQ86YN6 1023 aaKnown RBP27.37■■□□□ 1.97
NEK3-206ENST00000611833 ABCC8Q09428 1581 aa27.36■■□□□ 1.97
NEK3-206ENST00000611833 PEG3Q9GZU2 1588 aa27.28■■□□□ 1.96
NEK3-206ENST00000611833 ATAD2BQ9ULI0 1458 aa27.08■■□□□ 1.93
NEK3-206ENST00000611833 SOGA1O94964 1423 aa27.04■■□□□ 1.92
NEK3-206ENST00000611833 ZEB1P37275 1124 aaPredicted RBP27■■□□□ 1.91
NEK3-206ENST00000611833 BAZ1BQ9UIG0 1483 aaKnown RBP26.98■■□□□ 1.91
NEK3-206ENST00000611833 WRNQ14191 1432 aaPredicted RBP eCLIP26.94■■□□□ 1.9
NEK3-206ENST00000611833 EEA1Q15075 1411 aa26.93■■□□□ 1.9
NEK3-206ENST00000611833 RUSC2Q8N2Y8 1516 aa26.92■■□□□ 1.9
NEK3-206ENST00000611833 CSRNP3Q8WYN3 585 aa26.86■■□□□ 1.89
NEK3-206ENST00000611833 SYNJ1O43426 1573 aa26.84■■□□□ 1.89
NEK3-206ENST00000611833 CEP162Q5TB80 1403 aa26.82■■□□□ 1.88
NEK3-206ENST00000611833 TNIKQ9UKE5 1360 aa26.82■■□□□ 1.88
NEK3-206ENST00000611833 GOLGA3Q08378 1498 aa26.71■■□□□ 1.87
NEK3-206ENST00000611833 UBTFP17480 764 aaKnown RBP26.68■■□□□ 1.86
NEK3-206ENST00000611833 HMGXB3Q12766 1538 aa26.62■■□□□ 1.85
NEK3-206ENST00000611833 NCAPD3P42695 1498 aa26.61■■□□□ 1.85
NEK3-206ENST00000611833 KIF21BO75037 1637 aa26.59■■□□□ 1.85
NEK3-206ENST00000611833 CEP164Q9UPV0 1460 aa26.59■■□□□ 1.85
NEK3-206ENST00000611833 TOP2BQ02880 1626 aa26.55■■□□□ 1.84
NEK3-206ENST00000611833 TTBK1Q5TCY1 1321 aaPredicted RBP26.48■■□□□ 1.83
NEK3-206ENST00000611833 BIVM-ERCC5R4GMW8 1640 aa26.48■■□□□ 1.83
NEK3-206ENST00000611833 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.47■■□□□ 1.83
NEK3-206ENST00000611833 CCER1Q8TC90 406 aaPredicted RBP26.45■■□□□ 1.82
NEK3-206ENST00000611833 RAPGEF2Q9Y4G8 1499 aa26.41■■□□□ 1.82
NEK3-206ENST00000611833 CLIP1P30622 1438 aa26.37■■□□□ 1.81
NEK3-206ENST00000611833 CFTRP13569 1480 aa26.33■■□□□ 1.81
NEK3-206ENST00000611833 CUX1P39880 1505 aa26.32■■□□□ 1.8
NEK3-206ENST00000611833 VPS8Q8N3P4 1428 aa26.25■■□□□ 1.79
NEK3-206ENST00000611833 PRXQ9BXM0 1461 aa26.21■■□□□ 1.79
NEK3-206ENST00000611833 ERICH3Q5RHP9 1530 aa26.21■■□□□ 1.79
NEK3-206ENST00000611833 PRDM2Q13029 1718 aa26.17■■□□□ 1.78
NEK3-206ENST00000611833 RANGAP1P46060 587 aaPredicted RBP26.14■■□□□ 1.78
NEK3-206ENST00000611833 KIF27Q86VH2 1401 aa26.12■■□□□ 1.77
NEK3-206ENST00000611833 APLP2Q06481 763 aa26.07■■□□□ 1.76
NEK3-206ENST00000611833 CADPSQ9ULU8 1353 aa26.06■■□□□ 1.76
NEK3-206ENST00000611833 CC2D2AQ9P2K1 1620 aa26.04■■□□□ 1.76
NEK3-206ENST00000611833 ARAP1Q96P48 1450 aa26.01■■□□□ 1.75
NEK3-206ENST00000611833 HNRNPUL2Q1KMD3 747 aaKnown RBP25.94■■□□□ 1.74
NEK3-206ENST00000611833 CUX2O14529 1486 aa25.91■■□□□ 1.74
NEK3-206ENST00000611833 FGD5Q6ZNL6 1462 aa25.87■■□□□ 1.73
NEK3-206ENST00000611833 IGF1RP08069 1367 aa25.85■■□□□ 1.73
NEK3-206ENST00000611833 DIEXFQ68CQ4 756 aaKnown RBP25.85■■□□□ 1.73
NEK3-206ENST00000611833 ARHGAP35Q9NRY4 1499 aa25.82■■□□□ 1.72
NEK3-206ENST00000611833 FANCD2Q9BXW9 1451 aa25.8■■□□□ 1.72
NEK3-206ENST00000611833 KANK4Q5T7N3 995 aaPredicted RBP25.77■■□□□ 1.72
NEK3-206ENST00000611833 CARMIL1Q5VZK9 1371 aa25.73■■□□□ 1.71
NEK3-206ENST00000611833 ZNF316A6NFI3 1004 aaPredicted RBP25.7■■□□□ 1.71
NEK3-206ENST00000611833 SCAF1Q9H7N4 1312 aaKnown RBP25.69■■□□□ 1.7
NEK3-206ENST00000611833 DNMBPQ6XZF7 1577 aa25.68■■□□□ 1.7
NEK3-206ENST00000611833 NESP48681 1621 aa25.67■■□□□ 1.7
NEK3-206ENST00000611833 TOPBP1Q92547 1522 aa25.62■■□□□ 1.69
NEK3-206ENST00000611833 RRBP1Q9P2E9 1410 aaKnown RBP25.62■■□□□ 1.69
NEK3-206ENST00000611833 RAD54L2Q9Y4B4 1467 aa25.61■■□□□ 1.69
NEK3-206ENST00000611833 POLA1P09884 1462 aaPredicted RBP25.6■■□□□ 1.69
NEK3-206ENST00000611833 ABCA10Q8WWZ4 1543 aa25.59■■□□□ 1.69
NEK3-206ENST00000611833 ACIN1Q9UKV3 1341 aaKnown RBP25.55■■□□□ 1.68
NEK3-206ENST00000611833 LAMC3Q9Y6N6 1575 aa25.52■■□□□ 1.68
NEK3-206ENST00000611833 TIAM1Q13009 1591 aa25.51■■□□□ 1.67
NEK3-206ENST00000611833 MAP3K1Q13233 1512 aa25.5■■□□□ 1.67
NEK3-206ENST00000611833 CENPBP07199 599 aaPredicted RBP25.5■■□□□ 1.67
NEK3-206ENST00000611833 CCNB3Q8WWL7 1395 aa25.5■■□□□ 1.67
NEK3-206ENST00000611833 NEUROD1Q13562 356 aa25.49■■□□□ 1.67
NEK3-206ENST00000611833 DHX57Q6P158 1386 aaKnown RBP25.49■■□□□ 1.67
NEK3-206ENST00000611833 URB2Q14146 1524 aaKnown RBP25.46■■□□□ 1.67
NEK3-206ENST00000611833 CUL7Q14999 1698 aa25.44■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms