RNA–Protein interactions for RNA: ENST00000610401.4

SSBP3-216, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 5 BASIC

Gene SSBP3, Length 3,168 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-216ENST00000610401 NEFLP07196 543 aa28.95■■■□□ 2.22
SSBP3-216ENST00000610401 SETD5Q9C0A6 1442 aa28.91■■■□□ 2.22
SSBP3-216ENST00000610401 ERICH3Q5RHP9 1530 aa28.9■■■□□ 2.22
SSBP3-216ENST00000610401 ANP32CO43423 234 aa28.9■■■□□ 2.22
SSBP3-216ENST00000610401 IGF1RP08069 1367 aa28.89■■■□□ 2.22
SSBP3-216ENST00000610401 WDR97A6NE52 1622 aa28.88■■■□□ 2.21
SSBP3-216ENST00000610401 ARID3CA6NKF2 412 aa28.88■■■□□ 2.21
SSBP3-216ENST00000610401 CARMIL1Q5VZK9 1371 aa28.87■■■□□ 2.21
SSBP3-216ENST00000610401 MAPKBP1O60336 1514 aa28.84■■■□□ 2.21
SSBP3-216ENST00000610401 ANP32EQ9BTT0 268 aa28.81■■■□□ 2.2
SSBP3-216ENST00000610401 BIVM-ERCC5R4GMW8 1640 aa28.79■■■□□ 2.2
SSBP3-216ENST00000610401 CHIC2Q9UKJ5 165 aa28.79■■■□□ 2.2
SSBP3-216ENST00000610401 PPP1R15AO75807 674 aaPredicted RBP28.78■■■□□ 2.2
SSBP3-216ENST00000610401 FHOD3Q2V2M9 1422 aa28.78■■■□□ 2.2
SSBP3-216ENST00000610401 SENP3-EIF4A1A0A087X0R7 540 aa28.73■■■□□ 2.19
SSBP3-216ENST00000610401 HNRNPUQ00839 825 aaKnown RBP eCLIP28.73■■■□□ 2.193e-6■□□□□ 10.4
SSBP3-216ENST00000610401 TONSLQ96HA7 1378 aa28.71■■■□□ 2.19
SSBP3-216ENST00000610401 RBM19Q9Y4C8 960 aaKnown RBP28.71■■■□□ 2.19
SSBP3-216ENST00000610401 LRRC9Q6ZRR7 1453 aa28.7■■■□□ 2.18
SSBP3-216ENST00000610401 RRP7BPQ9NSQ0 103 aa28.68■■■□□ 2.18
SSBP3-216ENST00000610401 CFTRP13569 1480 aa28.64■■■□□ 2.18
SSBP3-216ENST00000610401 TIAM1Q13009 1591 aa28.63■■■□□ 2.17
SSBP3-216ENST00000610401 NCAPD3P42695 1498 aa28.62■■■□□ 2.17
SSBP3-216ENST00000610401 FGD5Q6ZNL6 1462 aa28.6■■■□□ 2.17
SSBP3-216ENST00000610401 FOXD1Q16676 465 aa28.6■■■□□ 2.17
SSBP3-216ENST00000610401 RAD54L2Q9Y4B4 1467 aa28.56■■■□□ 2.16
SSBP3-216ENST00000610401 MTUS2Q5JR59 1369 aa28.54■■■□□ 2.16
SSBP3-216ENST00000610401 POLR3GLQ9BT43 218 aa28.53■■■□□ 2.16
SSBP3-216ENST00000610401 FAM9BQ8IZU0 186 aa28.52■■■□□ 2.16
SSBP3-216ENST00000610401 CCDC184Q52MB2 194 aa28.48■■■□□ 2.15
SSBP3-216ENST00000610401 CADPSQ9ULU8 1353 aa28.48■■■□□ 2.15
SSBP3-216ENST00000610401 FHAD1B1AJZ9 1412 aa28.47■■■□□ 2.15
SSBP3-216ENST00000610401 PCF11O94913 1555 aaKnown RBP28.45■■■□□ 2.15
SSBP3-216ENST00000610401 CCER2I3L3R5 266 aa28.44■■■□□ 2.14
SSBP3-216ENST00000610401 HSPA5P11021 654 aaKnown RBP28.41■■■□□ 2.14
SSBP3-216ENST00000610401 PTPRKQ15262 1439 aa28.39■■■□□ 2.14
SSBP3-216ENST00000610401 HMGXB3Q12766 1538 aa28.38■■■□□ 2.13
SSBP3-216ENST00000610401 TDRD9Q8NDG6 1382 aaKnown RBP28.38■■■□□ 2.13
SSBP3-216ENST00000610401 MSH5O43196 834 aa28.36■■■□□ 2.13
SSBP3-216ENST00000610401 CCDC18Q5T9S5 1454 aa28.34■■■□□ 2.13
SSBP3-216ENST00000610401 ERICH6Q7L0X2 663 aa28.34■■■□□ 2.13
SSBP3-216ENST00000610401 BCL11AQ9H165 835 aa28.33■■■□□ 2.13
SSBP3-216ENST00000610401 ZNF326Q5BKZ1 582 aaKnown RBP28.33■■■□□ 2.13
SSBP3-216ENST00000610401 WASHC2AQ641Q2 1341 aa28.31■■■□□ 2.12
SSBP3-216ENST00000610401 B4GALNT3Q6L9W6 998 aa28.31■■■□□ 2.12
SSBP3-216ENST00000610401 TIMELESSQ9UNS1 1208 aa28.31■■■□□ 2.12
SSBP3-216ENST00000610401 CDK11AQ9UQ88 783 aaPredicted RBP28.31■■■□□ 2.12
SSBP3-216ENST00000610401 FGD6Q6ZV73 1430 aa28.31■■■□□ 2.12
SSBP3-216ENST00000610401 AQRO60306 1485 aaKnown RBP eCLIP28.3■■■□□ 2.121e-7■■■■■ 27.3
SSBP3-216ENST00000610401 NESP48681 1621 aa28.28■■■□□ 2.12
SSBP3-216ENST00000610401 C11orf95C9JLR9 678 aaPredicted RBP28.26■■■□□ 2.11
SSBP3-216ENST00000610401 FANCD2Q9BXW9 1451 aa28.26■■■□□ 2.11
SSBP3-216ENST00000610401 MRS2Q9HD23 443 aa28.25■■■□□ 2.11
SSBP3-216ENST00000610401 L3MBTL2Q969R5 705 aa28.22■■■□□ 2.11
SSBP3-216ENST00000610401 EIF4G2P78344 907 aaKnown RBP eCLIP28.21■■■□□ 2.118e-7■■■■□ 25.5
SSBP3-216ENST00000610401 DNAJC5BQ9UF47 199 aa28.18■■■□□ 2.1
SSBP3-216ENST00000610401 CASKIN1Q8WXD9 1431 aa28.17■■■□□ 2.1
SSBP3-216ENST00000610401 MAP3K1Q13233 1512 aa28.16■■■□□ 2.1
SSBP3-216ENST00000610401 UACAQ9BZF9 1416 aa28.14■■■□□ 2.1
SSBP3-216ENST00000610401 NAIPQ13075 1403 aa28.14■■■□□ 2.09
SSBP3-216ENST00000610401 POLA1P09884 1462 aaPredicted RBP28.12■■■□□ 2.09
SSBP3-216ENST00000610401 MPHOSPH9Q99550 1183 aa28.12■■■□□ 2.09
SSBP3-216ENST00000610401 FYCO1Q9BQS8 1478 aa28.11■■■□□ 2.09
SSBP3-216ENST00000610401 NCOA2Q15596 1464 aa28.1■■■□□ 2.09
SSBP3-216ENST00000610401 FMN1Q68DA7 1419 aa28.09■■■□□ 2.09
SSBP3-216ENST00000610401 HFM1A2PYH4 1435 aa28.08■■■□□ 2.09
SSBP3-216ENST00000610401 ZNF644Q9H582 1327 aaPredicted RBP28.05■■■□□ 2.08
SSBP3-216ENST00000610401 NBPF8Q3BBV2 869 aa28.05■■■□□ 2.08
SSBP3-216ENST00000610401 ZNF777Q9ULD5 760 aaPredicted RBP28.04■■■□□ 2.08
SSBP3-216ENST00000610401 SALL2Q9Y467 1007 aaPredicted RBP28.04■■■□□ 2.08
SSBP3-216ENST00000610401 CFAP43Q8NDM7 1665 aa28.03■■■□□ 2.08
SSBP3-216ENST00000610401 PRKRIP1Q9H875 184 aaPredicted RBP28.03■■■□□ 2.08
SSBP3-216ENST00000610401 NBR1Q14596 966 aa28.02■■■□□ 2.08
SSBP3-216ENST00000610401 SLC4A1APQ9BWU0 796 aaKnown RBP28.02■■■□□ 2.08
SSBP3-216ENST00000610401 MYOM3Q5VTT5 1437 aa28.01■■■□□ 2.08
SSBP3-216ENST00000610401 TOPBP1Q92547 1522 aa28■■■□□ 2.07
SSBP3-216ENST00000610401 PTPN23Q9H3S7 1636 aa27.98■■■□□ 2.07
SSBP3-216ENST00000610401 PPP4R2Q9NY27 417 aa27.97■■■□□ 2.07
SSBP3-216ENST00000610401 SNAPC4Q5SXM2 1469 aa27.93■■■□□ 2.06
SSBP3-216ENST00000610401 ABCA10Q8WWZ4 1543 aa27.9■■■□□ 2.06
SSBP3-216ENST00000610401 CC2D2AQ9P2K1 1620 aa27.9■■■□□ 2.06
SSBP3-216ENST00000610401 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.89■■■□□ 2.052e-6■■□□□ 13.6
SSBP3-216ENST00000610401 KIF7Q2M1P5 1343 aa27.88■■■□□ 2.05
SSBP3-216ENST00000610401 KDM2AQ9Y2K7 1162 aa27.87■■■□□ 2.05
SSBP3-216ENST00000610401 CCDC7Q96M83 1385 aa27.86■■■□□ 2.05
SSBP3-216ENST00000610401 KDM6BO15054 1643 aa27.84■■■□□ 2.05
SSBP3-216ENST00000610401 EFCAB5A4FU69 1503 aa27.84■■■□□ 2.05
SSBP3-216ENST00000610401 CNTLNQ9NXG0 1405 aa27.82■■■□□ 2.04
SSBP3-216ENST00000610401 MAGI3Q5TCQ9 1506 aa27.81■■■□□ 2.04
SSBP3-216ENST00000610401 GAPVD1Q14C86 1478 aa27.81■■■□□ 2.04
SSBP3-216ENST00000610401 AKNAQ7Z591 1439 aa27.81■■■□□ 2.04
SSBP3-216ENST00000610401 CDK13Q14004 1512 aaKnown RBP27.81■■■□□ 2.04
SSBP3-216ENST00000610401 DNMBPQ6XZF7 1577 aa27.8■■■□□ 2.04
SSBP3-216ENST00000610401 KDM5BQ9UGL1 1544 aa27.8■■■□□ 2.04
SSBP3-216ENST00000610401 CCDC136Q96JN2 1154 aa27.79■■■□□ 2.04
SSBP3-216ENST00000610401 DENND4BO75064 1496 aaPredicted RBP27.79■■■□□ 2.04
SSBP3-216ENST00000610401 FANCIQ9NVI1 1328 aa27.78■■■□□ 2.04
SSBP3-216ENST00000610401 PAK3O75914 559 aaPredicted RBP27.78■■■□□ 2.04
SSBP3-216ENST00000610401 FBLN2P98095 1184 aa27.77■■■□□ 2.04
SSBP3-216ENST00000610401 NPM2Q86SE8 214 aaKnown RBP27.77■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms