RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 KIF27Q86VH2 1401 aa14.61□□□□□ -0.07
LIG1-220ENST00000601091 CLSPNQ9HAW4 1339 aa14.59□□□□□ -0.07
LIG1-220ENST00000601091 GLIPR1L2Q4G1C9 344 aa14.56□□□□□ -0.08
LIG1-220ENST00000601091 NPM2Q86SE8 214 aaKnown RBP14.55□□□□□ -0.08
LIG1-220ENST00000601091 ATAD2BQ9ULI0 1458 aa14.55□□□□□ -0.08
LIG1-220ENST00000601091 ANP32CO43423 234 aa14.54□□□□□ -0.08
LIG1-220ENST00000601091 DEKP35659 375 aaKnown RBP14.52□□□□□ -0.08
LIG1-220ENST00000601091 TRIM52Q96A61 297 aa14.51□□□□□ -0.09
LIG1-220ENST00000601091 RAPGEF2Q9Y4G8 1499 aa14.5□□□□□ -0.09
LIG1-220ENST00000601091 KANK4Q5T7N3 995 aaPredicted RBP14.48□□□□□ -0.09
LIG1-220ENST00000601091 SUPT16HQ9Y5B9 1047 aaKnown RBP14.48□□□□□ -0.09
LIG1-220ENST00000601091 DDX10Q13206 875 aaKnown RBP14.47□□□□□ -0.09
LIG1-220ENST00000601091 MYT1LQ9UL68 1186 aa14.46□□□□□ -0.09
LIG1-220ENST00000601091 CCNB3Q8WWL7 1395 aa14.46□□□□□ -0.09
LIG1-220ENST00000601091 CHMP4AQ9BY43 222 aa14.45□□□□□ -0.1
LIG1-220ENST00000601091 TAF7LQ5H9L4 462 aa14.44□□□□□ -0.1
LIG1-220ENST00000601091 FGD1P98174 961 aa14.42□□□□□ -0.1
LIG1-220ENST00000601091 PAXIP1Q6ZW49 1069 aaPredicted RBP14.42□□□□□ -0.1
LIG1-220ENST00000601091 TONSLQ96HA7 1378 aa14.42□□□□□ -0.1
LIG1-220ENST00000601091 KCNH8Q96L42 1107 aa14.41□□□□□ -0.1
LIG1-220ENST00000601091 HIRIP3Q9BW71 556 aaPredicted RBP14.4□□□□□ -0.1
LIG1-220ENST00000601091 FKBP8Q14318 412 aa14.4□□□□□ -0.1
LIG1-220ENST00000601091 POLR3GLQ9BT43 218 aa14.4□□□□□ -0.1
LIG1-220ENST00000601091 CARMIL1Q5VZK9 1371 aa14.39□□□□□ -0.11
LIG1-220ENST00000601091 CUX2O14529 1486 aa14.39□□□□□ -0.11
LIG1-220ENST00000601091 VSIG10Q8N0Z9 540 aa14.38□□□□□ -0.11
LIG1-220ENST00000601091 TPRNQ4KMQ1 711 aa14.38□□□□□ -0.11
LIG1-220ENST00000601091 MTUS2Q5JR59 1369 aa14.37□□□□□ -0.11
LIG1-220ENST00000601091 AMER1Q5JTC6 1135 aaPredicted RBP14.37□□□□□ -0.11
LIG1-220ENST00000601091 TSHZ2Q9NRE2 1034 aa14.36□□□□□ -0.11
LIG1-220ENST00000601091 FHAD1B1AJZ9 1412 aa14.34□□□□□ -0.11
LIG1-220ENST00000601091 KIF21BO75037 1637 aa14.33□□□□□ -0.12
LIG1-220ENST00000601091 CNGB1Q14028 1251 aaPredicted RBP14.33□□□□□ -0.12
LIG1-220ENST00000601091 SYNJ1O43426 1573 aa14.33□□□□□ -0.12
LIG1-220ENST00000601091 ARID3CA6NKF2 412 aa14.32□□□□□ -0.12
LIG1-220ENST00000601091 SIN3AQ96ST3 1273 aa14.32□□□□□ -0.12
LIG1-220ENST00000601091 DHX57Q6P158 1386 aaKnown RBP14.31□□□□□ -0.12
LIG1-220ENST00000601091 ERICH6BQ5W0A0 696 aa14.31□□□□□ -0.12
LIG1-220ENST00000601091 TAOK2Q9UL54 1235 aa14.31□□□□□ -0.12
LIG1-220ENST00000601091 IRX6P78412 446 aaPredicted RBP14.29□□□□□ -0.12
LIG1-220ENST00000601091 SETD5Q9C0A6 1442 aa14.28□□□□□ -0.12
LIG1-220ENST00000601091 CHIC2Q9UKJ5 165 aa14.28□□□□□ -0.12
LIG1-220ENST00000601091 RBM10P98175 930 aaKnown RBP14.27□□□□□ -0.12
LIG1-220ENST00000601091 ZMYND15Q9H091 742 aa14.27□□□□□ -0.12
LIG1-220ENST00000601091 RAB3GAP2Q9H2M9 1393 aa14.27□□□□□ -0.12
LIG1-220ENST00000601091 NAP1L5Q96NT1 182 aaPredicted RBP14.27□□□□□ -0.12
LIG1-220ENST00000601091 CDK11AQ9UQ88 783 aaPredicted RBP14.25□□□□□ -0.13
LIG1-220ENST00000601091 CADPSQ9ULU8 1353 aa14.25□□□□□ -0.13
LIG1-220ENST00000601091 EIF4G1Q04637 1599 aaKnown RBP14.24□□□□□ -0.13
LIG1-220ENST00000601091 BRD2P25440 801 aaKnown RBP14.23□□□□□ -0.13
LIG1-220ENST00000601091 HNRNPUQ00839 825 aaKnown RBP eCLIP14.23□□□□□ -0.13
LIG1-220ENST00000601091 NCAPD3P42695 1498 aa14.23□□□□□ -0.13
LIG1-220ENST00000601091 ZNF326Q5BKZ1 582 aaKnown RBP14.22□□□□□ -0.13
LIG1-220ENST00000601091 BICRAQ9NZM4 1560 aa14.21□□□□□ -0.13
LIG1-220ENST00000601091 RRP7BPQ9NSQ0 103 aa14.21□□□□□ -0.13
LIG1-220ENST00000601091 FBLN2P98095 1184 aa14.19□□□□□ -0.14
LIG1-220ENST00000601091 PRXQ9BXM0 1461 aa14.19□□□□□ -0.14
LIG1-220ENST00000601091 AAMPQ13685 434 aa14.19□□□□□ -0.14
LIG1-220ENST00000601091 ERICH3Q5RHP9 1530 aa14.19□□□□□ -0.14
LIG1-220ENST00000601091 IGF1RP08069 1367 aa14.19□□□□□ -0.14
LIG1-220ENST00000601091 TOP2BQ02880 1626 aa14.17□□□□□ -0.14
LIG1-220ENST00000601091 ARHGAP35Q9NRY4 1499 aa14.17□□□□□ -0.14
LIG1-220ENST00000601091 PEG3Q9GZU2 1588 aa14.17□□□□□ -0.14
LIG1-220ENST00000601091 EIF4G2P78344 907 aaKnown RBP eCLIP14.16□□□□□ -0.141e-11■■■■■ 55.3
LIG1-220ENST00000601091 ZNF777Q9ULD5 760 aaPredicted RBP14.16□□□□□ -0.14
LIG1-220ENST00000601091 CDK11BP21127 795 aaKnown RBP14.16□□□□□ -0.14
LIG1-220ENST00000601091 ARAP1Q96P48 1450 aa14.15□□□□□ -0.14
LIG1-220ENST00000601091 PPP1R15AO75807 674 aaPredicted RBP14.13□□□□□ -0.15
LIG1-220ENST00000601091 RBM19Q9Y4C8 960 aaKnown RBP14.12□□□□□ -0.15
LIG1-220ENST00000601091 KCNA4P22459 653 aa14.12□□□□□ -0.15
LIG1-220ENST00000601091 UNC13AQ9UPW8 1703 aa14.12□□□□□ -0.15
LIG1-220ENST00000601091 FAM9BQ8IZU0 186 aa14.12□□□□□ -0.15
LIG1-220ENST00000601091 CFTRP13569 1480 aa14.11□□□□□ -0.15
LIG1-220ENST00000601091 FMN1Q68DA7 1419 aa14.11□□□□□ -0.15
LIG1-220ENST00000601091 RRBP1Q9P2E9 1410 aaKnown RBP14.11□□□□□ -0.15
LIG1-220ENST00000601091 CCER2I3L3R5 266 aa14.1□□□□□ -0.15
LIG1-220ENST00000601091 FHOD3Q2V2M9 1422 aa14.1□□□□□ -0.15
LIG1-220ENST00000601091 SENP3-EIF4A1A0A087X0R7 540 aa14.09□□□□□ -0.15
LIG1-220ENST00000601091 SAMD1Q6SPF0 538 aaPredicted RBP14.09□□□□□ -0.15
LIG1-220ENST00000601091 SLC4A1APQ9BWU0 796 aaKnown RBP14.08□□□□□ -0.16
LIG1-220ENST00000601091 MRS2Q9HD23 443 aa14.07□□□□□ -0.16
LIG1-220ENST00000601091 CUX1P39880 1505 aa14.07□□□□□ -0.16
LIG1-220ENST00000601091 FGD5Q6ZNL6 1462 aa14.07□□□□□ -0.16
LIG1-220ENST00000601091 TDRD9Q8NDG6 1382 aaKnown RBP14.07□□□□□ -0.16
LIG1-220ENST00000601091 CFAP44Q96MT7 982 aa14.07□□□□□ -0.16
LIG1-220ENST00000601091 HMGXB3Q12766 1538 aa14.05□□□□□ -0.16
LIG1-220ENST00000601091 FANCD2Q9BXW9 1451 aa14.04□□□□□ -0.16
LIG1-220ENST00000601091 PHLDB1Q86UU1 1377 aa14.03□□□□□ -0.16
LIG1-220ENST00000601091 LRRC9Q6ZRR7 1453 aa14.02□□□□□ -0.16
LIG1-220ENST00000601091 IL27Q8NEV9 243 aa14□□□□□ -0.17
LIG1-220ENST00000601091 NBR1Q14596 966 aa14□□□□□ -0.17
LIG1-220ENST00000601091 CHMP7Q8WUX9 453 aaPredicted RBP14□□□□□ -0.17
LIG1-220ENST00000601091 TSPY4P0CV99 314 aa13.99□□□□□ -0.17
LIG1-220ENST00000601091 TSPY10P0CW01 314 aa13.99□□□□□ -0.17
LIG1-220ENST00000601091 PDS5BQ9NTI5 1447 aa13.98□□□□□ -0.17
LIG1-220ENST00000601091 CFDP1Q9UEE9 299 aaPredicted RBP13.98□□□□□ -0.17
LIG1-220ENST00000601091 HSPA5P11021 654 aaKnown RBP13.97□□□□□ -0.17
LIG1-220ENST00000601091 TMC1Q8TDI8 760 aa13.96□□□□□ -0.17
LIG1-220ENST00000601091 RAD54L2Q9Y4B4 1467 aa13.95□□□□□ -0.18
LIG1-220ENST00000601091 MPHOSPH9Q99550 1183 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms