RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 NISCHQ9Y2I1 1504 aa19.5■□□□□ 0.71
LIG1-220ENST00000601091 PELP1Q8IZL8 1130 aaKnown RBP18.02■□□□□ 0.47
LIG1-220ENST00000601091 MYT1Q01538 1121 aa17.93■□□□□ 0.46
LIG1-220ENST00000601091 DCAF8L2P0C7V8 631 aa17.65■□□□□ 0.42
LIG1-220ENST00000601091 SLC24A1O60721 1099 aa17.56■□□□□ 0.4
LIG1-220ENST00000601091 SUPT5HO00267 1087 aaKnown RBP17.5■□□□□ 0.39
LIG1-220ENST00000601091 SHROOM4Q9ULL8 1493 aa17.5■□□□□ 0.39
LIG1-220ENST00000601091 PRKCSHP14314 528 aaPredicted RBP17.21■□□□□ 0.35
LIG1-220ENST00000601091 TTBK1Q5TCY1 1321 aaPredicted RBP17.18■□□□□ 0.34
LIG1-220ENST00000601091 ERICH6Q7L0X2 663 aa17.03■□□□□ 0.32
LIG1-220ENST00000601091 PCGF6Q9BYE7 350 aa16.7■□□□□ 0.26
LIG1-220ENST00000601091 PPARGC1BQ86YN6 1023 aaKnown RBP16.62■□□□□ 0.25
LIG1-220ENST00000601091 CHIC1Q5VXU3 224 aa16.51■□□□□ 0.23
LIG1-220ENST00000601091 HRCP23327 699 aa16.49■□□□□ 0.23
LIG1-220ENST00000601091 APLP2Q06481 763 aa16.48■□□□□ 0.23
LIG1-220ENST00000601091 BCL11AQ9H165 835 aa16.46■□□□□ 0.23
LIG1-220ENST00000601091 ZCCHC6Q5VYS8 1495 aaKnown RBP16.36■□□□□ 0.21
LIG1-220ENST00000601091 DAXXQ9UER7 740 aaPredicted RBP16.36■□□□□ 0.21
LIG1-220ENST00000601091 EHMT2Q96KQ7 1210 aa16.32■□□□□ 0.2
LIG1-220ENST00000601091 FAM9AQ8IZU1 332 aaPredicted RBP16.29■□□□□ 0.2
LIG1-220ENST00000601091 TRIM41Q8WV44 630 aa16.28■□□□□ 0.2
LIG1-220ENST00000601091 EIF5BO60841 1220 aaKnown RBP16.21■□□□□ 0.19
LIG1-220ENST00000601091 CCDC180Q9P1Z9 1646 aa16.21■□□□□ 0.19
LIG1-220ENST00000601091 LOC105371045A0A1W2PR82 267 aa16.19■□□□□ 0.18
LIG1-220ENST00000601091 TRIM26Q12899 539 aaPredicted RBP16.1■□□□□ 0.17
LIG1-220ENST00000601091 ZEB1P37275 1124 aaPredicted RBP16.07■□□□□ 0.16
LIG1-220ENST00000601091 MYO15BQ96JP2 1530 aa16.03■□□□□ 0.16
LIG1-220ENST00000601091 PLEKHG5O94827 1062 aa15.85■□□□□ 0.13
LIG1-220ENST00000601091 CENPBP07199 599 aaPredicted RBP15.79■□□□□ 0.12
LIG1-220ENST00000601091 CCER1Q8TC90 406 aaPredicted RBP15.79■□□□□ 0.12
LIG1-220ENST00000601091 SCAF1Q9H7N4 1312 aaKnown RBP15.79■□□□□ 0.12
LIG1-220ENST00000601091 DCAF1Q9Y4B6 1507 aa15.75■□□□□ 0.11
LIG1-220ENST00000601091 ABCC9O60706 1549 aa15.74■□□□□ 0.11
LIG1-220ENST00000601091 UBTFP17480 764 aaKnown RBP15.71■□□□□ 0.11
LIG1-220ENST00000601091 SCRIBQ14160 1630 aa15.66■□□□□ 0.1
LIG1-220ENST00000601091 RSF1Q96T23 1441 aaPredicted RBP15.58■□□□□ 0.08
LIG1-220ENST00000601091 PODXL2Q9NZ53 605 aa15.58■□□□□ 0.08
LIG1-220ENST00000601091 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.52■□□□□ 0.07
LIG1-220ENST00000601091 RANGAP1P46060 587 aaPredicted RBP15.52■□□□□ 0.07
LIG1-220ENST00000601091 YTHDC1Q96MU7 727 aaKnown RBP15.48■□□□□ 0.07
LIG1-220ENST00000601091 PLPPR3Q6T4P5 718 aa15.46■□□□□ 0.07
LIG1-220ENST00000601091 GTF3C3Q9Y5Q9 886 aa15.4■□□□□ 0.06
LIG1-220ENST00000601091 NEUROD1Q13562 356 aa15.38■□□□□ 0.05
LIG1-220ENST00000601091 PABPN1Q86U42 306 aaKnown RBP eCLIP15.37■□□□□ 0.052e-6■■■■□ 25.6
LIG1-220ENST00000601091 NACADO15069 1562 aa15.33■□□□□ 0.04
LIG1-220ENST00000601091 RB1CC1Q8TDY2 1594 aa15.33■□□□□ 0.04
LIG1-220ENST00000601091 RTN4Q9NQC3 1192 aaKnown RBP15.31■□□□□ 0.04
LIG1-220ENST00000601091 CSRNP3Q8WYN3 585 aa15.31■□□□□ 0.04
LIG1-220ENST00000601091 HNRNPUL2Q1KMD3 747 aaKnown RBP15.3■□□□□ 0.04
LIG1-220ENST00000601091 ANO8Q9HCE9 1232 aaPredicted RBP15.3■□□□□ 0.04
LIG1-220ENST00000601091 ACIN1Q9UKV3 1341 aaKnown RBP15.28■□□□□ 0.04
LIG1-220ENST00000601091 DIEXFQ68CQ4 756 aaKnown RBP15.28■□□□□ 0.04
LIG1-220ENST00000601091 KLHL34Q8N239 644 aa15.28■□□□□ 0.04
LIG1-220ENST00000601091 NCBP3Q53F19 620 aaKnown RBP15.28■□□□□ 0.04
LIG1-220ENST00000601091 CECR2Q9BXF3 1484 aa15.26■□□□□ 0.03
LIG1-220ENST00000601091 ANP32EQ9BTT0 268 aa15.18■□□□□ 0.02
LIG1-220ENST00000601091 AEBP2Q6ZN18 517 aaPredicted RBP15.17■□□□□ 0.02
LIG1-220ENST00000601091 PKNOX2Q96KN3 472 aa15.17■□□□□ 0.02
LIG1-220ENST00000601091 MROH2BQ7Z745 1585 aa15.14■□□□□ 0.01
LIG1-220ENST00000601091 ATP1B4Q9UN42 357 aaPredicted RBP15.13■□□□□ 0.01
LIG1-220ENST00000601091 UBE2Q2Q8WVN8 375 aa15.11■□□□□ 0.01
LIG1-220ENST00000601091 BAZ1AQ9NRL2 1556 aaPredicted RBP15.1■□□□□ 0.01
LIG1-220ENST00000601091 TIMELESSQ9UNS1 1208 aa15.1■□□□□ 0.01
LIG1-220ENST00000601091 CCDC136Q96JN2 1154 aa15.08■□□□□ 0
LIG1-220ENST00000601091 ZNF316A6NFI3 1004 aaPredicted RBP15.08■□□□□ 0
LIG1-220ENST00000601091 ITGAEP38570 1179 aa15.05■□□□□ -0
LIG1-220ENST00000601091 EEA1Q15075 1411 aa15.04■□□□□ -0
LIG1-220ENST00000601091 CEP162Q5TB80 1403 aa15.02■□□□□ -0
LIG1-220ENST00000601091 TULP1O00294 542 aaPredicted RBP15.01□□□□□ -0.01
LIG1-220ENST00000601091 TNIKQ9UKE5 1360 aa14.99□□□□□ -0.01
LIG1-220ENST00000601091 WIZO95785 1651 aa14.97□□□□□ -0.01
LIG1-220ENST00000601091 NEFLP07196 543 aa14.96□□□□□ -0.01
LIG1-220ENST00000601091 PDE4CQ08493 712 aa14.95□□□□□ -0.02
LIG1-220ENST00000601091 PDIA4P13667 645 aaKnown RBP14.94□□□□□ -0.02
LIG1-220ENST00000601091 WRNQ14191 1432 aaPredicted RBP eCLIP14.93□□□□□ -0.02
LIG1-220ENST00000601091 GOLGA3Q08378 1498 aa14.93□□□□□ -0.02
LIG1-220ENST00000601091 CCDC88BA6NC98 1476 aa14.92□□□□□ -0.02
LIG1-220ENST00000601091 ARXQ96QS3 562 aa14.92□□□□□ -0.02
LIG1-220ENST00000601091 SOGA1O94964 1423 aa14.9□□□□□ -0.02
LIG1-220ENST00000601091 A0A0U1RQG5 324 aaPredicted RBP14.9□□□□□ -0.02
LIG1-220ENST00000601091 CLIP1P30622 1438 aa14.89□□□□□ -0.03
LIG1-220ENST00000601091 MIER1Q8N108 512 aa14.88□□□□□ -0.03
LIG1-220ENST00000601091 ABCC8Q09428 1581 aa14.86□□□□□ -0.03
LIG1-220ENST00000601091 TOP2AP11388 1531 aaKnown RBP14.84□□□□□ -0.03
LIG1-220ENST00000601091 CEP164Q9UPV0 1460 aa14.82□□□□□ -0.04
LIG1-220ENST00000601091 SALL2Q9Y467 1007 aaPredicted RBP14.81□□□□□ -0.04
LIG1-220ENST00000601091 FAM50AQ14320 339 aaKnown RBP14.8□□□□□ -0.04
LIG1-220ENST00000601091 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.78□□□□□ -0.04
LIG1-220ENST00000601091 BAZ1BQ9UIG0 1483 aaKnown RBP14.78□□□□□ -0.04
LIG1-220ENST00000601091 HAP1P54257 671 aaPredicted RBP14.77□□□□□ -0.04
LIG1-220ENST00000601091 BCANQ96GW7 911 aa14.76□□□□□ -0.05
LIG1-220ENST00000601091 SMARCA4P51532 1647 aa14.73□□□□□ -0.05
LIG1-220ENST00000601091 BCL11BQ9C0K0 894 aaPredicted RBP14.69□□□□□ -0.06
LIG1-220ENST00000601091 P3H3Q8IVL6 736 aa14.67□□□□□ -0.06
LIG1-220ENST00000601091 HOMEZQ8IX15 550 aa14.67□□□□□ -0.06
LIG1-220ENST00000601091 VPS8Q8N3P4 1428 aa14.64□□□□□ -0.07
LIG1-220ENST00000601091 RUSC2Q8N2Y8 1516 aa14.64□□□□□ -0.07
LIG1-220ENST00000601091 SMARCA2P51531 1590 aa14.63□□□□□ -0.07
LIG1-220ENST00000601091 C14orf37Q86TY3 774 aa14.63□□□□□ -0.07
LIG1-220ENST00000601091 DHX37Q8IY37 1157 aaKnown RBP14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms