RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-222ENST00000600320 GOLGA3Q08378 1498 aa32.87■■■□□ 2.85
SHKBP1-222ENST00000600320 KIAA0586Q9BVV6 1533 aa32.85■■■□□ 2.85
SHKBP1-222ENST00000600320 CTTNBP2Q8WZ74 1663 aa32.78■■■□□ 2.84
SHKBP1-222ENST00000600320 IQGAP2Q13576 1575 aa32.75■■■□□ 2.83
SHKBP1-222ENST00000600320 SHROOM2Q13796 1616 aa32.73■■■□□ 2.83
SHKBP1-222ENST00000600320 UBTFP17480 764 aaKnown RBP32.72■■■□□ 2.83
SHKBP1-222ENST00000600320 JPH4Q96JJ6 628 aa32.71■■■□□ 2.83
SHKBP1-222ENST00000600320 LOC105371045A0A1W2PR82 267 aa32.67■■■□□ 2.82
SHKBP1-222ENST00000600320 ERCC6L2Q5T890 1561 aa32.62■■■□□ 2.81
SHKBP1-222ENST00000600320 UGGT2Q9NYU1 1516 aa32.61■■■□□ 2.81
SHKBP1-222ENST00000600320 PRG4Q92954 1404 aaPredicted RBP32.6■■■□□ 2.81
SHKBP1-222ENST00000600320 ARHGEF11O15085 1522 aa32.59■■■□□ 2.81
SHKBP1-222ENST00000600320 TNIKQ9UKE5 1360 aa32.57■■■□□ 2.8
SHKBP1-222ENST00000600320 RIMBP3CA6NJZ7 1639 aa32.54■■■□□ 2.8
SHKBP1-222ENST00000600320 RIMBP3BA6NNM3 1639 aa32.54■■■□□ 2.8
SHKBP1-222ENST00000600320 RIMBP3Q9UFD9 1639 aa32.54■■■□□ 2.8
SHKBP1-222ENST00000600320 DISP1Q96F81 1524 aa32.51■■■□□ 2.8
SHKBP1-222ENST00000600320 RANGAP1P46060 587 aaPredicted RBP32.51■■■□□ 2.79
SHKBP1-222ENST00000600320 KIAA0556O60303 1618 aa32.45■■■□□ 2.79
SHKBP1-222ENST00000600320 CARMIL2Q6F5E8 1435 aa32.44■■■□□ 2.78
SHKBP1-222ENST00000600320 SAMD9Q5K651 1589 aa32.42■■■□□ 2.78
SHKBP1-222ENST00000600320 ARAP1Q96P48 1450 aa32.4■■■□□ 2.78
SHKBP1-222ENST00000600320 P3H3Q8IVL6 736 aa32.38■■■□□ 2.77
SHKBP1-222ENST00000600320 EFCAB5A4FU69 1503 aa32.35■■■□□ 2.77
SHKBP1-222ENST00000600320 ARHGAP35Q9NRY4 1499 aa32.35■■■□□ 2.77
SHKBP1-222ENST00000600320 CLIP1P30622 1438 aa32.3■■■□□ 2.76
SHKBP1-222ENST00000600320 CEP162Q5TB80 1403 aa32.3■■■□□ 2.76
SHKBP1-222ENST00000600320 FHOD3Q2V2M9 1422 aa32.29■■■□□ 2.76
SHKBP1-222ENST00000600320 TTBK1Q5TCY1 1321 aaPredicted RBP32.28■■■□□ 2.76
SHKBP1-222ENST00000600320 PTPRGP23470 1445 aa32.27■■■□□ 2.76
SHKBP1-222ENST00000600320 CYB5RLQ6IPT4 315 aa32.25■■■□□ 2.75
SHKBP1-222ENST00000600320 PLB1Q6P1J6 1458 aa32.1■■■□□ 2.73
SHKBP1-222ENST00000600320 UACAQ9BZF9 1416 aa32.09■■■□□ 2.73
SHKBP1-222ENST00000600320 ABCA8O94911 1581 aa32.08■■■□□ 2.73
SHKBP1-222ENST00000600320 ADCY10Q96PN6 1610 aa32.04■■■□□ 2.72
SHKBP1-222ENST00000600320 FMN1Q68DA7 1419 aa32.02■■■□□ 2.72
SHKBP1-222ENST00000600320 ABCC2Q92887 1545 aa32.01■■■□□ 2.72
SHKBP1-222ENST00000600320 UHRF1BP1LA0JNW5 1464 aa32.01■■■□□ 2.71
SHKBP1-222ENST00000600320 RAPGEF6Q8TEU7 1601 aa31.99■■■□□ 2.71
SHKBP1-222ENST00000600320 PCF11O94913 1555 aaKnown RBP31.92■■■□□ 2.7
SHKBP1-222ENST00000600320 NUP153P49790 1475 aaKnown RBP31.9■■■□□ 2.7
SHKBP1-222ENST00000600320 CASKIN1Q8WXD9 1431 aa31.88■■■□□ 2.69
SHKBP1-222ENST00000600320 VPS8Q8N3P4 1428 aa31.87■■■□□ 2.69
SHKBP1-222ENST00000600320 ARID3CA6NKF2 412 aa31.87■■■□□ 2.69
SHKBP1-222ENST00000600320 KDM5BQ9UGL1 1544 aa31.86■■■□□ 2.69
SHKBP1-222ENST00000600320 HECW1Q76N89 1606 aa31.83■■■□□ 2.69
SHKBP1-222ENST00000600320 ATP1B4Q9UN42 357 aaPredicted RBP31.83■■■□□ 2.69
SHKBP1-222ENST00000600320 ATP10BO94823 1461 aa31.82■■■□□ 2.68
SHKBP1-222ENST00000600320 ZCCHC11Q5TAX3 1644 aaKnown RBP31.82■■■□□ 2.68
SHKBP1-222ENST00000600320 FYCO1Q9BQS8 1478 aa31.81■■■□□ 2.68
SHKBP1-222ENST00000600320 NPM1P06748 294 aaKnown RBP eCLIP31.79■■■□□ 2.68
SHKBP1-222ENST00000600320 LRRIQ1Q96JM4 1722 aa31.78■■■□□ 2.68
SHKBP1-222ENST00000600320 EPRSP07814 1512 aaKnown RBP31.76■■■□□ 2.68
SHKBP1-222ENST00000600320 CDK13Q14004 1512 aaKnown RBP31.76■■■□□ 2.68
SHKBP1-222ENST00000600320 MAPKBP1O60336 1514 aa31.7■■■□□ 2.66
SHKBP1-222ENST00000600320 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.68■■■□□ 2.66
SHKBP1-222ENST00000600320 HNRNPUL2Q1KMD3 747 aaKnown RBP31.68■■■□□ 2.66
SHKBP1-222ENST00000600320 ASXL2Q76L83 1435 aa31.66■■■□□ 2.66
SHKBP1-222ENST00000600320 CCDC18Q5T9S5 1454 aa31.65■■■□□ 2.66
SHKBP1-222ENST00000600320 WDR7Q9Y4E6 1490 aa31.58■■■□□ 2.65
SHKBP1-222ENST00000600320 MAGI3Q5TCQ9 1506 aa31.54■■■□□ 2.64
SHKBP1-222ENST00000600320 CFAP43Q8NDM7 1665 aa31.54■■■□□ 2.64
SHKBP1-222ENST00000600320 TIAM1Q13009 1591 aa31.53■■■□□ 2.64
SHKBP1-222ENST00000600320 PLEKHD1A6NEE1 506 aa31.53■■■□□ 2.64
SHKBP1-222ENST00000600320 TRHP20396 242 aaPredicted RBP31.53■■■□□ 2.64
SHKBP1-222ENST00000600320 ABCC10Q5T3U5 1492 aa31.49■■■□□ 2.63
SHKBP1-222ENST00000600320 CDK11AQ9UQ88 783 aaPredicted RBP31.49■■■□□ 2.63
SHKBP1-222ENST00000600320 MAP3K1Q13233 1512 aa31.49■■■□□ 2.63
SHKBP1-222ENST00000600320 TROQ12816 1431 aaPredicted RBP31.48■■■□□ 2.63
SHKBP1-222ENST00000600320 DIP2BQ9P265 1576 aa31.47■■■□□ 2.63
SHKBP1-222ENST00000600320 KCNH8Q96L42 1107 aa31.47■■■□□ 2.63
SHKBP1-222ENST00000600320 APLP2Q06481 763 aa31.42■■■□□ 2.62
SHKBP1-222ENST00000600320 KIF13AQ9H1H9 1805 aa31.41■■■□□ 2.62
SHKBP1-222ENST00000600320 KANK4Q5T7N3 995 aaPredicted RBP31.41■■■□□ 2.62
SHKBP1-222ENST00000600320 FAM69CQ0P6D2 419 aa31.4■■■□□ 2.62
SHKBP1-222ENST00000600320 MTUS2Q5JR59 1369 aa31.4■■■□□ 2.62
SHKBP1-222ENST00000600320 LRRC9Q6ZRR7 1453 aa31.39■■■□□ 2.62
SHKBP1-222ENST00000600320 GLI2P10070 1586 aa31.39■■■□□ 2.61
SHKBP1-222ENST00000600320 KIF14Q15058 1648 aa31.38■■■□□ 2.61
SHKBP1-222ENST00000600320 EHBP1L1Q8N3D4 1523 aa31.38■■■□□ 2.61
SHKBP1-222ENST00000600320 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.34■■■□□ 2.61
SHKBP1-222ENST00000600320 ABCA9Q8IUA7 1624 aa31.31■■■□□ 2.6
SHKBP1-222ENST00000600320 TTC37Q6PGP7 1564 aa31.3■■■□□ 2.6
SHKBP1-222ENST00000600320 MAP3K4Q9Y6R4 1608 aa31.27■■■□□ 2.6
SHKBP1-222ENST00000600320 PPARGC1BQ86YN6 1023 aaKnown RBP31.23■■■□□ 2.59
SHKBP1-222ENST00000600320 SUPT6HQ7KZ85 1726 aaKnown RBP31.23■■■□□ 2.59
SHKBP1-222ENST00000600320 CD109Q6YHK3 1445 aa31.23■■■□□ 2.59
SHKBP1-222ENST00000600320 NCOA2Q15596 1464 aa31.21■■■□□ 2.59
SHKBP1-222ENST00000600320 TSPOAP1O95153 1857 aa31.18■■■□□ 2.58
SHKBP1-222ENST00000600320 PPRC1Q5VV67 1664 aaKnown RBP31.18■■■□□ 2.58
SHKBP1-222ENST00000600320 GPATCH8Q9UKJ3 1502 aaKnown RBP31.14■■■□□ 2.57
SHKBP1-222ENST00000600320 MYO5CQ9NQX4 1742 aa31.13■■■□□ 2.57
SHKBP1-222ENST00000600320 PLCH2O75038 1416 aa31.13■■■□□ 2.57
SHKBP1-222ENST00000600320 CCNB3Q8WWL7 1395 aa31.12■■■□□ 2.57
SHKBP1-222ENST00000600320 CDC42BPAQ5VT25 1732 aa31.12■■■□□ 2.57
SHKBP1-222ENST00000600320 PREX2Q70Z35 1606 aa31.09■■■□□ 2.57
SHKBP1-222ENST00000600320 CDC42BPBQ9Y5S2 1711 aa31.07■■■□□ 2.56
SHKBP1-222ENST00000600320 PHLDB1Q86UU1 1377 aa31.07■■■□□ 2.56
SHKBP1-222ENST00000600320 ARAP3Q8WWN8 1544 aa31.06■■■□□ 2.56
SHKBP1-222ENST00000600320 ARHGAP5Q13017 1502 aa31.04■■■□□ 2.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms