RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, human

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-222	ENST00000600320	GOLGA3	Q08378	1498 aa		32.87	■■■□□ 2.85
SHKBP1-222	ENST00000600320	KIAA0586	Q9BVV6	1533 aa		32.85	■■■□□ 2.85
SHKBP1-222	ENST00000600320	CTTNBP2	Q8WZ74	1663 aa		32.78	■■■□□ 2.84
SHKBP1-222	ENST00000600320	IQGAP2	Q13576	1575 aa		32.75	■■■□□ 2.83
SHKBP1-222	ENST00000600320	SHROOM2	Q13796	1616 aa		32.73	■■■□□ 2.83
SHKBP1-222	ENST00000600320	UBTF	P17480	764 aa	Known RBP	32.72	■■■□□ 2.83
SHKBP1-222	ENST00000600320	JPH4	Q96JJ6	628 aa		32.71	■■■□□ 2.83
SHKBP1-222	ENST00000600320	LOC105371045	A0A1W2PR82	267 aa		32.67	■■■□□ 2.82
SHKBP1-222	ENST00000600320	ERCC6L2	Q5T890	1561 aa		32.62	■■■□□ 2.81
SHKBP1-222	ENST00000600320	UGGT2	Q9NYU1	1516 aa		32.61	■■■□□ 2.81
SHKBP1-222	ENST00000600320	PRG4	Q92954	1404 aa	Predicted RBP	32.6	■■■□□ 2.81
SHKBP1-222	ENST00000600320	ARHGEF11	O15085	1522 aa		32.59	■■■□□ 2.81
SHKBP1-222	ENST00000600320	TNIK	Q9UKE5	1360 aa		32.57	■■■□□ 2.8
SHKBP1-222	ENST00000600320	RIMBP3C	A6NJZ7	1639 aa		32.54	■■■□□ 2.8
SHKBP1-222	ENST00000600320	RIMBP3B	A6NNM3	1639 aa		32.54	■■■□□ 2.8
SHKBP1-222	ENST00000600320	RIMBP3	Q9UFD9	1639 aa		32.54	■■■□□ 2.8
SHKBP1-222	ENST00000600320	DISP1	Q96F81	1524 aa		32.51	■■■□□ 2.8
SHKBP1-222	ENST00000600320	RANGAP1	P46060	587 aa	Predicted RBP	32.51	■■■□□ 2.79
SHKBP1-222	ENST00000600320	KIAA0556	O60303	1618 aa		32.45	■■■□□ 2.79
SHKBP1-222	ENST00000600320	CARMIL2	Q6F5E8	1435 aa		32.44	■■■□□ 2.78
SHKBP1-222	ENST00000600320	SAMD9	Q5K651	1589 aa		32.42	■■■□□ 2.78
SHKBP1-222	ENST00000600320	ARAP1	Q96P48	1450 aa		32.4	■■■□□ 2.78
SHKBP1-222	ENST00000600320	P3H3	Q8IVL6	736 aa		32.38	■■■□□ 2.77
SHKBP1-222	ENST00000600320	EFCAB5	A4FU69	1503 aa		32.35	■■■□□ 2.77
SHKBP1-222	ENST00000600320	ARHGAP35	Q9NRY4	1499 aa		32.35	■■■□□ 2.77
SHKBP1-222	ENST00000600320	CLIP1	P30622	1438 aa		32.3	■■■□□ 2.76
SHKBP1-222	ENST00000600320	CEP162	Q5TB80	1403 aa		32.3	■■■□□ 2.76
SHKBP1-222	ENST00000600320	FHOD3	Q2V2M9	1422 aa		32.29	■■■□□ 2.76
SHKBP1-222	ENST00000600320	TTBK1	Q5TCY1	1321 aa	Predicted RBP	32.28	■■■□□ 2.76
SHKBP1-222	ENST00000600320	PTPRG	P23470	1445 aa		32.27	■■■□□ 2.76
SHKBP1-222	ENST00000600320	CYB5RL	Q6IPT4	315 aa		32.25	■■■□□ 2.75
SHKBP1-222	ENST00000600320	PLB1	Q6P1J6	1458 aa		32.1	■■■□□ 2.73
SHKBP1-222	ENST00000600320	UACA	Q9BZF9	1416 aa		32.09	■■■□□ 2.73
SHKBP1-222	ENST00000600320	ABCA8	O94911	1581 aa		32.08	■■■□□ 2.73
SHKBP1-222	ENST00000600320	ADCY10	Q96PN6	1610 aa		32.04	■■■□□ 2.72
SHKBP1-222	ENST00000600320	FMN1	Q68DA7	1419 aa		32.02	■■■□□ 2.72
SHKBP1-222	ENST00000600320	ABCC2	Q92887	1545 aa		32.01	■■■□□ 2.72
SHKBP1-222	ENST00000600320	UHRF1BP1L	A0JNW5	1464 aa		32.01	■■■□□ 2.71
SHKBP1-222	ENST00000600320	RAPGEF6	Q8TEU7	1601 aa		31.99	■■■□□ 2.71
SHKBP1-222	ENST00000600320	PCF11	O94913	1555 aa	Known RBP	31.92	■■■□□ 2.7
SHKBP1-222	ENST00000600320	NUP153	P49790	1475 aa	Known RBP	31.9	■■■□□ 2.7
SHKBP1-222	ENST00000600320	CASKIN1	Q8WXD9	1431 aa		31.88	■■■□□ 2.69
SHKBP1-222	ENST00000600320	VPS8	Q8N3P4	1428 aa		31.87	■■■□□ 2.69
SHKBP1-222	ENST00000600320	ARID3C	A6NKF2	412 aa		31.87	■■■□□ 2.69
SHKBP1-222	ENST00000600320	KDM5B	Q9UGL1	1544 aa		31.86	■■■□□ 2.69
SHKBP1-222	ENST00000600320	HECW1	Q76N89	1606 aa		31.83	■■■□□ 2.69
SHKBP1-222	ENST00000600320	ATP1B4	Q9UN42	357 aa	Predicted RBP	31.83	■■■□□ 2.69
SHKBP1-222	ENST00000600320	ATP10B	O94823	1461 aa		31.82	■■■□□ 2.68
SHKBP1-222	ENST00000600320	ZCCHC11	Q5TAX3	1644 aa	Known RBP	31.82	■■■□□ 2.68
SHKBP1-222	ENST00000600320	FYCO1	Q9BQS8	1478 aa		31.81	■■■□□ 2.68
SHKBP1-222	ENST00000600320	NPM1	P06748	294 aa	Known RBP eCLIP	31.79	■■■□□ 2.68
SHKBP1-222	ENST00000600320	LRRIQ1	Q96JM4	1722 aa		31.78	■■■□□ 2.68
SHKBP1-222	ENST00000600320	EPRS	P07814	1512 aa	Known RBP	31.76	■■■□□ 2.68
SHKBP1-222	ENST00000600320	CDK13	Q14004	1512 aa	Known RBP	31.76	■■■□□ 2.68
SHKBP1-222	ENST00000600320	MAPKBP1	O60336	1514 aa		31.7	■■■□□ 2.66
SHKBP1-222	ENST00000600320	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	31.68	■■■□□ 2.66
SHKBP1-222	ENST00000600320	HNRNPUL2	Q1KMD3	747 aa	Known RBP	31.68	■■■□□ 2.66
SHKBP1-222	ENST00000600320	ASXL2	Q76L83	1435 aa		31.66	■■■□□ 2.66
SHKBP1-222	ENST00000600320	CCDC18	Q5T9S5	1454 aa		31.65	■■■□□ 2.66
SHKBP1-222	ENST00000600320	WDR7	Q9Y4E6	1490 aa		31.58	■■■□□ 2.65
SHKBP1-222	ENST00000600320	MAGI3	Q5TCQ9	1506 aa		31.54	■■■□□ 2.64
SHKBP1-222	ENST00000600320	CFAP43	Q8NDM7	1665 aa		31.54	■■■□□ 2.64
SHKBP1-222	ENST00000600320	TIAM1	Q13009	1591 aa		31.53	■■■□□ 2.64
SHKBP1-222	ENST00000600320	PLEKHD1	A6NEE1	506 aa		31.53	■■■□□ 2.64
SHKBP1-222	ENST00000600320	TRH	P20396	242 aa	Predicted RBP	31.53	■■■□□ 2.64
SHKBP1-222	ENST00000600320	ABCC10	Q5T3U5	1492 aa		31.49	■■■□□ 2.63
SHKBP1-222	ENST00000600320	CDK11A	Q9UQ88	783 aa	Predicted RBP	31.49	■■■□□ 2.63
SHKBP1-222	ENST00000600320	MAP3K1	Q13233	1512 aa		31.49	■■■□□ 2.63
SHKBP1-222	ENST00000600320	TRO	Q12816	1431 aa	Predicted RBP	31.48	■■■□□ 2.63
SHKBP1-222	ENST00000600320	DIP2B	Q9P265	1576 aa		31.47	■■■□□ 2.63
SHKBP1-222	ENST00000600320	KCNH8	Q96L42	1107 aa		31.47	■■■□□ 2.63
SHKBP1-222	ENST00000600320	APLP2	Q06481	763 aa		31.42	■■■□□ 2.62
SHKBP1-222	ENST00000600320	KIF13A	Q9H1H9	1805 aa		31.41	■■■□□ 2.62
SHKBP1-222	ENST00000600320	KANK4	Q5T7N3	995 aa	Predicted RBP	31.41	■■■□□ 2.62
SHKBP1-222	ENST00000600320	FAM69C	Q0P6D2	419 aa		31.4	■■■□□ 2.62
SHKBP1-222	ENST00000600320	MTUS2	Q5JR59	1369 aa		31.4	■■■□□ 2.62
SHKBP1-222	ENST00000600320	LRRC9	Q6ZRR7	1453 aa		31.39	■■■□□ 2.62
SHKBP1-222	ENST00000600320	GLI2	P10070	1586 aa		31.39	■■■□□ 2.61
SHKBP1-222	ENST00000600320	KIF14	Q15058	1648 aa		31.38	■■■□□ 2.61
SHKBP1-222	ENST00000600320	EHBP1L1	Q8N3D4	1523 aa		31.38	■■■□□ 2.61
SHKBP1-222	ENST00000600320	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	31.34	■■■□□ 2.61
SHKBP1-222	ENST00000600320	ABCA9	Q8IUA7	1624 aa		31.31	■■■□□ 2.6
SHKBP1-222	ENST00000600320	TTC37	Q6PGP7	1564 aa		31.3	■■■□□ 2.6
SHKBP1-222	ENST00000600320	MAP3K4	Q9Y6R4	1608 aa		31.27	■■■□□ 2.6
SHKBP1-222	ENST00000600320	PPARGC1B	Q86YN6	1023 aa	Known RBP	31.23	■■■□□ 2.59
SHKBP1-222	ENST00000600320	SUPT6H	Q7KZ85	1726 aa	Known RBP	31.23	■■■□□ 2.59
SHKBP1-222	ENST00000600320	CD109	Q6YHK3	1445 aa		31.23	■■■□□ 2.59
SHKBP1-222	ENST00000600320	NCOA2	Q15596	1464 aa		31.21	■■■□□ 2.59
SHKBP1-222	ENST00000600320	TSPOAP1	O95153	1857 aa		31.18	■■■□□ 2.58
SHKBP1-222	ENST00000600320	PPRC1	Q5VV67	1664 aa	Known RBP	31.18	■■■□□ 2.58
SHKBP1-222	ENST00000600320	GPATCH8	Q9UKJ3	1502 aa	Known RBP	31.14	■■■□□ 2.57
SHKBP1-222	ENST00000600320	MYO5C	Q9NQX4	1742 aa		31.13	■■■□□ 2.57
SHKBP1-222	ENST00000600320	PLCH2	O75038	1416 aa		31.13	■■■□□ 2.57
SHKBP1-222	ENST00000600320	CCNB3	Q8WWL7	1395 aa		31.12	■■■□□ 2.57
SHKBP1-222	ENST00000600320	CDC42BPA	Q5VT25	1732 aa		31.12	■■■□□ 2.57
SHKBP1-222	ENST00000600320	PREX2	Q70Z35	1606 aa		31.09	■■■□□ 2.57
SHKBP1-222	ENST00000600320	CDC42BPB	Q9Y5S2	1711 aa		31.07	■■■□□ 2.56
SHKBP1-222	ENST00000600320	PHLDB1	Q86UU1	1377 aa		31.07	■■■□□ 2.56
SHKBP1-222	ENST00000600320	ARAP3	Q8WWN8	1544 aa		31.06	■■■□□ 2.56
SHKBP1-222	ENST00000600320	ARHGAP5	Q13017	1502 aa		31.04	■■■□□ 2.56

Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms