RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-222ENST00000600320 NISCHQ9Y2I1 1504 aa47.69■■■■■ 5.22
SHKBP1-222ENST00000600320 CCDC180Q9P1Z9 1646 aa42.09■■■■■ 4.33
SHKBP1-222ENST00000600320 ABCC9O60706 1549 aa40.72■■■■■ 4.11
SHKBP1-222ENST00000600320 ZCCHC6Q5VYS8 1495 aaKnown RBP39.86■■■■□ 3.97
SHKBP1-222ENST00000600320 DCAF8L2P0C7V8 631 aa39.61■■■■□ 3.93
SHKBP1-222ENST00000600320 NACADO15069 1562 aa39.44■■■■□ 3.9
SHKBP1-222ENST00000600320 DCAF1Q9Y4B6 1507 aa39.44■■■■□ 3.9
SHKBP1-222ENST00000600320 MYO15BQ96JP2 1530 aa39.37■■■■□ 3.89
SHKBP1-222ENST00000600320 RB1CC1Q8TDY2 1594 aa39.33■■■■□ 3.89
SHKBP1-222ENST00000600320 SCRIBQ14160 1630 aa38.53■■■■□ 3.76
SHKBP1-222ENST00000600320 UNC13AQ9UPW8 1703 aa38.52■■■■□ 3.76
SHKBP1-222ENST00000600320 BICRAQ9NZM4 1560 aa38.21■■■■□ 3.71
SHKBP1-222ENST00000600320 PABPN1Q86U42 306 aaKnown RBP eCLIP38.17■■■■□ 3.7
SHKBP1-222ENST00000600320 SHROOM4Q9ULL8 1493 aa38.09■■■■□ 3.69
SHKBP1-222ENST00000600320 DNAJC5BQ9UF47 199 aa37.2■■■■□ 3.55
SHKBP1-222ENST00000600320 CECR2Q9BXF3 1484 aa37.15■■■■□ 3.54
SHKBP1-222ENST00000600320 EIF4G1Q04637 1599 aaKnown RBP37.12■■■■□ 3.53
SHKBP1-222ENST00000600320 BAZ1AQ9NRL2 1556 aaPredicted RBP36.89■■■■□ 3.5
SHKBP1-222ENST00000600320 SMARCA4P51532 1647 aa36.88■■■■□ 3.49
SHKBP1-222ENST00000600320 CC2D2AQ9P2K1 1620 aa36.84■■■■□ 3.49
SHKBP1-222ENST00000600320 MROH2BQ7Z745 1585 aa36.81■■■■□ 3.48
SHKBP1-222ENST00000600320 RSF1Q96T23 1441 aaPredicted RBP36.58■■■■□ 3.45
SHKBP1-222ENST00000600320 ATAD2BQ9ULI0 1458 aa36.55■■■■□ 3.44
SHKBP1-222ENST00000600320 PEG3Q9GZU2 1588 aa36.49■■■■□ 3.43
SHKBP1-222ENST00000600320 SMARCA2P51531 1590 aa36.47■■■■□ 3.43
SHKBP1-222ENST00000600320 WIZO95785 1651 aa36.43■■■■□ 3.42
SHKBP1-222ENST00000600320 NCAPD3P42695 1498 aa36.41■■■■□ 3.42
SHKBP1-222ENST00000600320 HMGXB3Q12766 1538 aa36.27■■■■□ 3.4
SHKBP1-222ENST00000600320 BAZ1BQ9UIG0 1483 aaKnown RBP36.24■■■■□ 3.39
SHKBP1-222ENST00000600320 SUPT5HO00267 1087 aaKnown RBP36.09■■■■□ 3.37
SHKBP1-222ENST00000600320 TOP2AP11388 1531 aaKnown RBP36.04■■■■□ 3.36
SHKBP1-222ENST00000600320 CCDC88BA6NC98 1476 aa35.64■■■■□ 3.3
SHKBP1-222ENST00000600320 NESP48681 1621 aa35.43■■■■□ 3.26
SHKBP1-222ENST00000600320 CADPSQ9ULU8 1353 aa35.38■■■■□ 3.26
SHKBP1-222ENST00000600320 LAMC3Q9Y6N6 1575 aa35.33■■■■□ 3.25
SHKBP1-222ENST00000600320 CFTRP13569 1480 aa35.29■■■■□ 3.24
SHKBP1-222ENST00000600320 PDS5BQ9NTI5 1447 aa35.06■■■■□ 3.2
SHKBP1-222ENST00000600320 PRDM2Q13029 1718 aa35.04■■■■□ 3.2
SHKBP1-222ENST00000600320 FANCD2Q9BXW9 1451 aa34.99■■■■□ 3.19
SHKBP1-222ENST00000600320 KIF21AQ7Z4S6 1674 aa34.98■■■■□ 3.19
SHKBP1-222ENST00000600320 ERCC6Q03468 1493 aa34.98■■■■□ 3.19
SHKBP1-222ENST00000600320 CEP164Q9UPV0 1460 aa34.87■■■■□ 3.17
SHKBP1-222ENST00000600320 THOC2Q8NI27 1593 aaKnown RBP34.74■■■■□ 3.15
SHKBP1-222ENST00000600320 MRC2Q9UBG0 1479 aa34.71■■■■□ 3.15
SHKBP1-222ENST00000600320 URB2Q14146 1524 aaKnown RBP34.64■■■■□ 3.14
SHKBP1-222ENST00000600320 WDR62O43379 1518 aa34.59■■■■□ 3.13
SHKBP1-222ENST00000600320 ABCC8Q09428 1581 aa34.54■■■■□ 3.12
SHKBP1-222ENST00000600320 TOPBP1Q92547 1522 aa34.51■■■■□ 3.12
SHKBP1-222ENST00000600320 DNMBPQ6XZF7 1577 aa34.49■■■■□ 3.11
SHKBP1-222ENST00000600320 CUX1P39880 1505 aa34.49■■■■□ 3.11
SHKBP1-222ENST00000600320 WRNQ14191 1432 aaPredicted RBP eCLIP34.45■■■■□ 3.11
SHKBP1-222ENST00000600320 CUX2O14529 1486 aa34.39■■■■□ 3.1
SHKBP1-222ENST00000600320 SYNJ1O43426 1573 aa34.36■■■■□ 3.09
SHKBP1-222ENST00000600320 TOP2BQ02880 1626 aa34.3■■■■□ 3.08
SHKBP1-222ENST00000600320 BIVM-ERCC5R4GMW8 1640 aa34.3■■■■□ 3.08
SHKBP1-222ENST00000600320 FGD5Q6ZNL6 1462 aa34.27■■■■□ 3.08
SHKBP1-222ENST00000600320 POLA1P09884 1462 aaPredicted RBP34.26■■■■□ 3.07
SHKBP1-222ENST00000600320 DNAJC5Q9H3Z4 198 aa34.24■■■■□ 3.07
SHKBP1-222ENST00000600320 RAD54L2Q9Y4B4 1467 aa34.14■■■■□ 3.06
SHKBP1-222ENST00000600320 IFT140Q96RY7 1462 aa34.12■■■■□ 3.05
SHKBP1-222ENST00000600320 SOGA1O94964 1423 aa34.11■■■■□ 3.05
SHKBP1-222ENST00000600320 TARBP1Q13395 1621 aaKnown RBP34.08■■■■□ 3.05
SHKBP1-222ENST00000600320 CHIC1Q5VXU3 224 aa34.03■■■■□ 3.04
SHKBP1-222ENST00000600320 TRIM41Q8WV44 630 aa34.01■■■■□ 3.03
SHKBP1-222ENST00000600320 ZNF608Q9ULD9 1512 aaPredicted RBP33.98■■■■□ 3.03
SHKBP1-222ENST00000600320 WDR97A6NE52 1622 aa33.94■■■■□ 3.02
SHKBP1-222ENST00000600320 ABCA10Q8WWZ4 1543 aa33.94■■■■□ 3.02
SHKBP1-222ENST00000600320 TDRD9Q8NDG6 1382 aaKnown RBP33.87■■■■□ 3.01
SHKBP1-222ENST00000600320 AQRO60306 1485 aaKnown RBP eCLIP33.84■■■■□ 3.01
SHKBP1-222ENST00000600320 EIF4G3O43432 1585 aaKnown RBP33.83■■■■□ 3.01
SHKBP1-222ENST00000600320 ABCA5Q8WWZ7 1642 aa33.76■■■■□ 3
SHKBP1-222ENST00000600320 GAPVD1Q14C86 1478 aa33.71■■■□□ 2.99
SHKBP1-222ENST00000600320 KIF27Q86VH2 1401 aa33.65■■■□□ 2.98
SHKBP1-222ENST00000600320 RUSC2Q8N2Y8 1516 aa33.64■■■□□ 2.98
SHKBP1-222ENST00000600320 GRIN2BQ13224 1484 aa33.63■■■□□ 2.97
SHKBP1-222ENST00000600320 PBRM1Q86U86 1689 aa33.61■■■□□ 2.97
SHKBP1-222ENST00000600320 SNAPC4Q5SXM2 1469 aa33.54■■■□□ 2.96
SHKBP1-222ENST00000600320 ERICH3Q5RHP9 1530 aa33.51■■■□□ 2.95
SHKBP1-222ENST00000600320 IGF1RP08069 1367 aa33.48■■■□□ 2.95
SHKBP1-222ENST00000600320 MAGI1Q96QZ7 1491 aaPredicted RBP33.46■■■□□ 2.95
SHKBP1-222ENST00000600320 ADAMTS12P58397 1594 aa33.4■■■□□ 2.94
SHKBP1-222ENST00000600320 FAM9AQ8IZU1 332 aaPredicted RBP33.37■■■□□ 2.93
SHKBP1-222ENST00000600320 EEA1Q15075 1411 aa33.36■■■□□ 2.93
SHKBP1-222ENST00000600320 FHAD1B1AJZ9 1412 aa33.35■■■□□ 2.93
SHKBP1-222ENST00000600320 SYNJ2O15056 1496 aa33.34■■■□□ 2.93
SHKBP1-222ENST00000600320 CUL7Q14999 1698 aa33.31■■■□□ 2.92
SHKBP1-222ENST00000600320 CHD1O14646 1710 aa33.3■■■□□ 2.92
SHKBP1-222ENST00000600320 FBLN2P98095 1184 aa33.29■■■□□ 2.92
SHKBP1-222ENST00000600320 CSRNP3Q8WYN3 585 aa33.29■■■□□ 2.92
SHKBP1-222ENST00000600320 CARMIL1Q5VZK9 1371 aa33.28■■■□□ 2.92
SHKBP1-222ENST00000600320 CHMP7Q8WUX9 453 aaPredicted RBP33.27■■■□□ 2.92
SHKBP1-222ENST00000600320 GRIN2AQ12879 1464 aa33.21■■■□□ 2.91
SHKBP1-222ENST00000600320 PRXQ9BXM0 1461 aa33.19■■■□□ 2.9
SHKBP1-222ENST00000600320 RAPGEF2Q9Y4G8 1499 aa33.14■■■□□ 2.9
SHKBP1-222ENST00000600320 OSCARQ8IYS5 282 aa33.08■■■□□ 2.89
SHKBP1-222ENST00000600320 CEP170Q5SW79 1584 aa33.05■■■□□ 2.88
SHKBP1-222ENST00000600320 NUP160Q12769 1436 aa33.05■■■□□ 2.88
SHKBP1-222ENST00000600320 KIF21BO75037 1637 aa33.02■■■□□ 2.88
SHKBP1-222ENST00000600320 CLASP1Q7Z460 1538 aa32.96■■■□□ 2.87
SHKBP1-222ENST00000600320 EHMT2Q96KQ7 1210 aa32.91■■■□□ 2.86
Retrieved 100 of 20,778 RNA–protein pairs in 143.6 ms