RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 CUL7Q14999 1698 aa21.81■■□□□ 1.08
UPF1-208ENST00000600012 KIF27Q86VH2 1401 aa21.8■■□□□ 1.08
UPF1-208ENST00000600012 IGF1RP08069 1367 aa21.76■■□□□ 1.07
UPF1-208ENST00000600012 KIAA0586Q9BVV6 1533 aa21.76■■□□□ 1.07
UPF1-208ENST00000600012 AEBP2Q6ZN18 517 aaPredicted RBP21.76■■□□□ 1.07
UPF1-208ENST00000600012 MAPKBP1O60336 1514 aa21.71■■□□□ 1.07
UPF1-208ENST00000600012 ADCY10Q96PN6 1610 aa21.7■■□□□ 1.06
UPF1-208ENST00000600012 NPM1P06748 294 aaKnown RBP eCLIP21.69■■□□□ 1.06
UPF1-208ENST00000600012 ABCC10Q5T3U5 1492 aa21.68■■□□□ 1.06
UPF1-208ENST00000600012 DIP2BQ9P265 1576 aa21.64■■□□□ 1.05
UPF1-208ENST00000600012 CARMIL1Q5VZK9 1371 aa21.63■■□□□ 1.05
UPF1-208ENST00000600012 FAM69CQ0P6D2 419 aa21.63■■□□□ 1.05
UPF1-208ENST00000600012 PTPRGP23470 1445 aa21.56■■□□□ 1.04
UPF1-208ENST00000600012 IQGAP2Q13576 1575 aa21.56■■□□□ 1.04
UPF1-208ENST00000600012 CARMIL2Q6F5E8 1435 aa21.55■■□□□ 1.04
UPF1-208ENST00000600012 TNIKQ9UKE5 1360 aa21.52■■□□□ 1.04
UPF1-208ENST00000600012 TSPOAP1O95153 1857 aa21.5■■□□□ 1.03
UPF1-208ENST00000600012 ABCC2Q92887 1545 aa21.49■■□□□ 1.03
UPF1-208ENST00000600012 KDM6BO15054 1643 aa21.48■■□□□ 1.03
UPF1-208ENST00000600012 TTBK1Q5TCY1 1321 aaPredicted RBP21.46■■□□□ 1.03
UPF1-208ENST00000600012 RAPGEF2Q9Y4G8 1499 aa21.45■■□□□ 1.02
UPF1-208ENST00000600012 UHRF1BP1LA0JNW5 1464 aa21.44■■□□□ 1.02
UPF1-208ENST00000600012 DISP1Q96F81 1524 aa21.43■■□□□ 1.02
UPF1-208ENST00000600012 UGGT2Q9NYU1 1516 aa21.41■■□□□ 1.02
UPF1-208ENST00000600012 PLB1Q6P1J6 1458 aa21.41■■□□□ 1.02
UPF1-208ENST00000600012 ASXL2Q76L83 1435 aa21.4■■□□□ 1.02
UPF1-208ENST00000600012 UACAQ9BZF9 1416 aa21.4■■□□□ 1.02
UPF1-208ENST00000600012 GLI2P10070 1586 aa21.39■■□□□ 1.01
UPF1-208ENST00000600012 KIAA0556O60303 1618 aa21.37■■□□□ 1.01
UPF1-208ENST00000600012 PPRC1Q5VV67 1664 aaKnown RBP21.34■■□□□ 1.01
UPF1-208ENST00000600012 KDM5BQ9UGL1 1544 aa21.34■■□□□ 1.01
UPF1-208ENST00000600012 CHIC1Q5VXU3 224 aa21.33■■□□□ 1.01
UPF1-208ENST00000600012 CTTNBP2Q8WZ74 1663 aa21.33■■□□□ 1
UPF1-208ENST00000600012 ZCCHC11Q5TAX3 1644 aaKnown RBP21.3■■□□□ 1
UPF1-208ENST00000600012 EPRSP07814 1512 aaKnown RBP21.28■■□□□ 1
UPF1-208ENST00000600012 MAP3K4Q9Y6R4 1608 aa21.27■■□□□ 1
UPF1-208ENST00000600012 KDM4FA0A1W2PPD8 638 aa21.24■□□□□ 0.99
UPF1-208ENST00000600012 GOLGA3Q08378 1498 aa21.24■□□□□ 0.99
UPF1-208ENST00000600012 TEX14Q8IWB6 1497 aa21.22■□□□□ 0.99
UPF1-208ENST00000600012 PRXQ9BXM0 1461 aa21.2■□□□□ 0.98
UPF1-208ENST00000600012 WDR7Q9Y4E6 1490 aa21.2■□□□□ 0.98
UPF1-208ENST00000600012 ABCA8O94911 1581 aa21.17■□□□□ 0.98
UPF1-208ENST00000600012 COL17A1Q9UMD9 1497 aaPredicted RBP21.15■□□□□ 0.98
UPF1-208ENST00000600012 CFAP43Q8NDM7 1665 aa21.11■□□□□ 0.97
UPF1-208ENST00000600012 ADGRL1O94910 1474 aa21.1■□□□□ 0.97
UPF1-208ENST00000600012 MAGI3Q5TCQ9 1506 aa21.07■□□□□ 0.96
UPF1-208ENST00000600012 CD109Q6YHK3 1445 aa21.05■□□□□ 0.96
UPF1-208ENST00000600012 FAM9AQ8IZU1 332 aaPredicted RBP21.03■□□□□ 0.96
UPF1-208ENST00000600012 KCNH8Q96L42 1107 aa21.02■□□□□ 0.96
UPF1-208ENST00000600012 SAMD9Q5K651 1589 aa20.99■□□□□ 0.95
UPF1-208ENST00000600012 CSRNP3Q8WYN3 585 aa20.98■□□□□ 0.95
UPF1-208ENST00000600012 ATP10BO94823 1461 aa20.96■□□□□ 0.95
UPF1-208ENST00000600012 P3H3Q8IVL6 736 aa20.96■□□□□ 0.95
UPF1-208ENST00000600012 RAPGEF6Q8TEU7 1601 aa20.93■□□□□ 0.94
UPF1-208ENST00000600012 EEA1Q15075 1411 aa20.93■□□□□ 0.94
UPF1-208ENST00000600012 ARID3CA6NKF2 412 aa20.92■□□□□ 0.94
UPF1-208ENST00000600012 ABCA9Q8IUA7 1624 aa20.92■□□□□ 0.94
UPF1-208ENST00000600012 ARAP3Q8WWN8 1544 aa20.9■□□□□ 0.94
UPF1-208ENST00000600012 KIF21BO75037 1637 aa20.87■□□□□ 0.93
UPF1-208ENST00000600012 PHLDB1Q86UU1 1377 aa20.86■□□□□ 0.93
UPF1-208ENST00000600012 HECW2Q9P2P5 1572 aa20.85■□□□□ 0.93
UPF1-208ENST00000600012 NUP153P49790 1475 aaKnown RBP20.82■□□□□ 0.92
UPF1-208ENST00000600012 NEO1Q92859 1461 aa20.81■□□□□ 0.92
UPF1-208ENST00000600012 FHOD3Q2V2M9 1422 aa20.8■□□□□ 0.92
UPF1-208ENST00000600012 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.8■□□□□ 0.92
UPF1-208ENST00000600012 HNRNPUL2Q1KMD3 747 aaKnown RBP20.8■□□□□ 0.92
UPF1-208ENST00000600012 EFCAB5A4FU69 1503 aa20.78■□□□□ 0.92
UPF1-208ENST00000600012 RANGAP1P46060 587 aaPredicted RBP20.77■□□□□ 0.92
UPF1-208ENST00000600012 FRMPD1Q5SYB0 1578 aa20.72■□□□□ 0.91
UPF1-208ENST00000600012 RAPGEF3O95398 923 aa20.72■□□□□ 0.91
UPF1-208ENST00000600012 ADAMTSL3P82987 1691 aa20.71■□□□□ 0.91
UPF1-208ENST00000600012 PLEKHD1A6NEE1 506 aa20.71■□□□□ 0.91
UPF1-208ENST00000600012 CFAP74Q9C0B2 1584 aa20.69■□□□□ 0.9
UPF1-208ENST00000600012 ILDR1Q86SU0 546 aaPredicted RBP20.69■□□□□ 0.9
UPF1-208ENST00000600012 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.66■□□□□ 0.9
UPF1-208ENST00000600012 BCORL1Q5H9F3 1711 aa20.66■□□□□ 0.9
UPF1-208ENST00000600012 RICTORQ6R327 1708 aa20.66■□□□□ 0.9
UPF1-208ENST00000600012 ARHGEF40Q8TER5 1519 aa20.65■□□□□ 0.9
UPF1-208ENST00000600012 DENND4BO75064 1496 aaPredicted RBP20.65■□□□□ 0.9
UPF1-208ENST00000600012 TTC37Q6PGP7 1564 aa20.64■□□□□ 0.9
UPF1-208ENST00000600012 FANCAO15360 1455 aa20.64■□□□□ 0.89
UPF1-208ENST00000600012 PTPRMP28827 1452 aa20.64■□□□□ 0.89
UPF1-208ENST00000600012 AKNAQ7Z591 1439 aa20.63■□□□□ 0.89
UPF1-208ENST00000600012 CDK13Q14004 1512 aaKnown RBP20.61■□□□□ 0.89
UPF1-208ENST00000600012 MADDQ8WXG6 1647 aa20.6■□□□□ 0.89
UPF1-208ENST00000600012 ARID4BQ4LE39 1312 aaPredicted RBP20.6■□□□□ 0.89
UPF1-208ENST00000600012 ZMYM4Q5VZL5 1548 aa20.59■□□□□ 0.89
UPF1-208ENST00000600012 HECW1Q76N89 1606 aa20.57■□□□□ 0.88
UPF1-208ENST00000600012 FMN1Q68DA7 1419 aa20.57■□□□□ 0.88
UPF1-208ENST00000600012 UBTFP17480 764 aaKnown RBP20.56■□□□□ 0.88
UPF1-208ENST00000600012 ZFYVE16Q7Z3T8 1539 aa20.54■□□□□ 0.88
UPF1-208ENST00000600012 MAGI2Q86UL8 1455 aa20.53■□□□□ 0.88
UPF1-208ENST00000600012 ARHGAP35Q9NRY4 1499 aa20.53■□□□□ 0.88
UPF1-208ENST00000600012 RIMS1Q86UR5 1692 aaKnown RBP20.53■□□□□ 0.88
UPF1-208ENST00000600012 MYO5CQ9NQX4 1742 aa20.52■□□□□ 0.88
UPF1-208ENST00000600012 PLCH2O75038 1416 aa20.52■□□□□ 0.87
UPF1-208ENST00000600012 POGZQ7Z3K3 1410 aa20.52■□□□□ 0.87
UPF1-208ENST00000600012 PCF11O94913 1555 aaKnown RBP20.51■□□□□ 0.87
UPF1-208ENST00000600012 EHMT2Q96KQ7 1210 aa20.5■□□□□ 0.87
UPF1-208ENST00000600012 LOC105371045A0A1W2PR82 267 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms