RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-205ENST00000597776 KIF27Q86VH2 1401 aa18.46■□□□□ 0.55
LSM4-205ENST00000597776 CUL7Q14999 1698 aa18.42■□□□□ 0.54
LSM4-205ENST00000597776 KIAA0586Q9BVV6 1533 aa18.39■□□□□ 0.53
LSM4-205ENST00000597776 KIF13AQ9H1H9 1805 aa18.35■□□□□ 0.53
LSM4-205ENST00000597776 CARMIL1Q5VZK9 1371 aa18.33■□□□□ 0.53
LSM4-205ENST00000597776 ADCY10Q96PN6 1610 aa18.33■□□□□ 0.52
LSM4-205ENST00000597776 NPM1P06748 294 aaKnown RBP eCLIP18.29■□□□□ 0.52
LSM4-205ENST00000597776 MAPKBP1O60336 1514 aa18.28■□□□□ 0.52
LSM4-205ENST00000597776 ABCC10Q5T3U5 1492 aa18.26■□□□□ 0.51
LSM4-205ENST00000597776 FAM69CQ0P6D2 419 aa18.26■□□□□ 0.51
LSM4-205ENST00000597776 TTBK1Q5TCY1 1321 aaPredicted RBP18.24■□□□□ 0.51
LSM4-205ENST00000597776 AEBP2Q6ZN18 517 aaPredicted RBP18.24■□□□□ 0.51
LSM4-205ENST00000597776 DIP2BQ9P265 1576 aa18.24■□□□□ 0.51
LSM4-205ENST00000597776 IQGAP2Q13576 1575 aa18.23■□□□□ 0.51
LSM4-205ENST00000597776 PTPRGP23470 1445 aa18.23■□□□□ 0.51
LSM4-205ENST00000597776 CARMIL2Q6F5E8 1435 aa18.2■□□□□ 0.5
LSM4-205ENST00000597776 TNIKQ9UKE5 1360 aa18.19■□□□□ 0.5
LSM4-205ENST00000597776 RAPGEF2Q9Y4G8 1499 aa18.16■□□□□ 0.5
LSM4-205ENST00000597776 DISP1Q96F81 1524 aa18.15■□□□□ 0.5
LSM4-205ENST00000597776 ABCC2Q92887 1545 aa18.13■□□□□ 0.49
LSM4-205ENST00000597776 UGGT2Q9NYU1 1516 aa18.11■□□□□ 0.49
LSM4-205ENST00000597776 TSPOAP1O95153 1857 aa18.11■□□□□ 0.49
LSM4-205ENST00000597776 UACAQ9BZF9 1416 aa18.09■□□□□ 0.49
LSM4-205ENST00000597776 UHRF1BP1LA0JNW5 1464 aa18.08■□□□□ 0.49
LSM4-205ENST00000597776 ASXL2Q76L83 1435 aa18.08■□□□□ 0.49
LSM4-205ENST00000597776 KDM6BO15054 1643 aa18.08■□□□□ 0.48
LSM4-205ENST00000597776 KIAA0556O60303 1618 aa18.07■□□□□ 0.48
LSM4-205ENST00000597776 PLB1Q6P1J6 1458 aa18.05■□□□□ 0.48
LSM4-205ENST00000597776 CTTNBP2Q8WZ74 1663 aa18.03■□□□□ 0.48
LSM4-205ENST00000597776 KDM5BQ9UGL1 1544 aa18.02■□□□□ 0.47
LSM4-205ENST00000597776 GLI2P10070 1586 aa18.01■□□□□ 0.47
LSM4-205ENST00000597776 ZCCHC11Q5TAX3 1644 aaKnown RBP18■□□□□ 0.47
LSM4-205ENST00000597776 PPRC1Q5VV67 1664 aaKnown RBP17.99■□□□□ 0.47
LSM4-205ENST00000597776 PRXQ9BXM0 1461 aa17.99■□□□□ 0.47
LSM4-205ENST00000597776 EPRSP07814 1512 aaKnown RBP17.97■□□□□ 0.47
LSM4-205ENST00000597776 GOLGA3Q08378 1498 aa17.94■□□□□ 0.46
LSM4-205ENST00000597776 MAP3K4Q9Y6R4 1608 aa17.93■□□□□ 0.46
LSM4-205ENST00000597776 KDM4FA0A1W2PPD8 638 aa17.91■□□□□ 0.46
LSM4-205ENST00000597776 ABCA8O94911 1581 aa17.91■□□□□ 0.46
LSM4-205ENST00000597776 WDR7Q9Y4E6 1490 aa17.9■□□□□ 0.46
LSM4-205ENST00000597776 COL17A1Q9UMD9 1497 aaPredicted RBP17.88■□□□□ 0.45
LSM4-205ENST00000597776 TEX14Q8IWB6 1497 aa17.86■□□□□ 0.45
LSM4-205ENST00000597776 P3H3Q8IVL6 736 aa17.84■□□□□ 0.45
LSM4-205ENST00000597776 CSRNP3Q8WYN3 585 aa17.83■□□□□ 0.44
LSM4-205ENST00000597776 ARID3CA6NKF2 412 aa17.81■□□□□ 0.44
LSM4-205ENST00000597776 KCNH8Q96L42 1107 aa17.81■□□□□ 0.44
LSM4-205ENST00000597776 CD109Q6YHK3 1445 aa17.79■□□□□ 0.44
LSM4-205ENST00000597776 CFAP43Q8NDM7 1665 aa17.77■□□□□ 0.44
LSM4-205ENST00000597776 ADGRL1O94910 1474 aa17.77■□□□□ 0.44
LSM4-205ENST00000597776 SAMD9Q5K651 1589 aa17.77■□□□□ 0.44
LSM4-205ENST00000597776 MAGI3Q5TCQ9 1506 aa17.77■□□□□ 0.43
LSM4-205ENST00000597776 ATP10BO94823 1461 aa17.75■□□□□ 0.43
LSM4-205ENST00000597776 EEA1Q15075 1411 aa17.73■□□□□ 0.43
LSM4-205ENST00000597776 FAM9AQ8IZU1 332 aaPredicted RBP17.73■□□□□ 0.43
LSM4-205ENST00000597776 RANGAP1P46060 587 aaPredicted RBP17.72■□□□□ 0.43
LSM4-205ENST00000597776 RAPGEF6Q8TEU7 1601 aa17.71■□□□□ 0.43
LSM4-205ENST00000597776 FHOD3Q2V2M9 1422 aa17.68■□□□□ 0.42
LSM4-205ENST00000597776 NUP153P49790 1475 aaKnown RBP17.66■□□□□ 0.42
LSM4-205ENST00000597776 ABCA9Q8IUA7 1624 aa17.65■□□□□ 0.42
LSM4-205ENST00000597776 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.64■□□□□ 0.41
LSM4-205ENST00000597776 HNRNPUL2Q1KMD3 747 aaKnown RBP17.64■□□□□ 0.41
LSM4-205ENST00000597776 KIF21BO75037 1637 aa17.63■□□□□ 0.41
LSM4-205ENST00000597776 ARAP3Q8WWN8 1544 aa17.62■□□□□ 0.41
LSM4-205ENST00000597776 EFCAB5A4FU69 1503 aa17.58■□□□□ 0.41
LSM4-205ENST00000597776 EHMT2Q96KQ7 1210 aa17.58■□□□□ 0.4
LSM4-205ENST00000597776 RAPGEF3O95398 923 aa17.55■□□□□ 0.4
LSM4-205ENST00000597776 NEO1Q92859 1461 aa17.55■□□□□ 0.4
LSM4-205ENST00000597776 PHLDB1Q86UU1 1377 aa17.54■□□□□ 0.4
LSM4-205ENST00000597776 HECW2Q9P2P5 1572 aa17.53■□□□□ 0.4
LSM4-205ENST00000597776 FRMPD1Q5SYB0 1578 aa17.53■□□□□ 0.4
LSM4-205ENST00000597776 PLEKHD1A6NEE1 506 aa17.51■□□□□ 0.39
LSM4-205ENST00000597776 CHIC1Q5VXU3 224 aa17.51■□□□□ 0.39
LSM4-205ENST00000597776 CDK13Q14004 1512 aaKnown RBP17.51■□□□□ 0.39
LSM4-205ENST00000597776 UBTFP17480 764 aaKnown RBP17.5■□□□□ 0.39
LSM4-205ENST00000597776 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.49■□□□□ 0.394e-7■■□□□ 12.1
LSM4-205ENST00000597776 TTC37Q6PGP7 1564 aa17.49■□□□□ 0.39
LSM4-205ENST00000597776 FANCAO15360 1455 aa17.46■□□□□ 0.39
LSM4-205ENST00000597776 ARHGAP35Q9NRY4 1499 aa17.45■□□□□ 0.38
LSM4-205ENST00000597776 AKNAQ7Z591 1439 aa17.45■□□□□ 0.38
LSM4-205ENST00000597776 DENND4BO75064 1496 aaPredicted RBP17.44■□□□□ 0.38
LSM4-205ENST00000597776 ADAMTSL3P82987 1691 aa17.43■□□□□ 0.38
LSM4-205ENST00000597776 ATP1B4Q9UN42 357 aaPredicted RBP17.43■□□□□ 0.38
LSM4-205ENST00000597776 CFAP74Q9C0B2 1584 aa17.43■□□□□ 0.38
LSM4-205ENST00000597776 RICTORQ6R327 1708 aa17.43■□□□□ 0.38
LSM4-205ENST00000597776 ARHGEF40Q8TER5 1519 aa17.42■□□□□ 0.38
LSM4-205ENST00000597776 FMN1Q68DA7 1419 aa17.41■□□□□ 0.38
LSM4-205ENST00000597776 HECW1Q76N89 1606 aa17.41■□□□□ 0.38
LSM4-205ENST00000597776 ARID4BQ4LE39 1312 aaPredicted RBP17.41■□□□□ 0.38
LSM4-205ENST00000597776 PTPRMP28827 1452 aa17.4■□□□□ 0.38
LSM4-205ENST00000597776 BCORL1Q5H9F3 1711 aa17.39■□□□□ 0.37
LSM4-205ENST00000597776 MADDQ8WXG6 1647 aa17.38■□□□□ 0.37
LSM4-205ENST00000597776 ILDR1Q86SU0 546 aaPredicted RBP17.37■□□□□ 0.37
LSM4-205ENST00000597776 ZMYM4Q5VZL5 1548 aa17.37■□□□□ 0.37
LSM4-205ENST00000597776 PLCH2O75038 1416 aa17.36■□□□□ 0.37
LSM4-205ENST00000597776 YEATS2Q9ULM3 1422 aa17.35■□□□□ 0.37
LSM4-205ENST00000597776 KIF14Q15058 1648 aa17.35■□□□□ 0.37
LSM4-205ENST00000597776 ZFYVE16Q7Z3T8 1539 aa17.34■□□□□ 0.37
LSM4-205ENST00000597776 SCAPERQ9BY12 1400 aa17.33■□□□□ 0.36
LSM4-205ENST00000597776 LRRIQ1Q96JM4 1722 aa17.33■□□□□ 0.36
LSM4-205ENST00000597776 SIGLEC1Q9BZZ2 1709 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms