RNA–Protein interactions for RNA: ENST00000591519.1

VPS4B-207, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 2 BASIC

Gene VPS4B, Length 551 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-207ENST00000591519 ABCA10Q8WWZ4 1543 aa18.64■□□□□ 0.58
VPS4B-207ENST00000591519 GAPVD1Q14C86 1478 aa18.64■□□□□ 0.57
VPS4B-207ENST00000591519 ARAP1Q96P48 1450 aa18.64■□□□□ 0.57
VPS4B-207ENST00000591519 SYNJ2O15056 1496 aa18.63■□□□□ 0.57
VPS4B-207ENST00000591519 CLASP1Q7Z460 1538 aa18.62■□□□□ 0.57
VPS4B-207ENST00000591519 SYNJ1O43426 1573 aa18.6■□□□□ 0.57
VPS4B-207ENST00000591519 WRNQ14191 1432 aaPredicted RBP eCLIP18.57■□□□□ 0.56
VPS4B-207ENST00000591519 ABCA5Q8WWZ7 1642 aa18.56■□□□□ 0.56
VPS4B-207ENST00000591519 PBRM1Q86U86 1689 aa18.56■□□□□ 0.56
VPS4B-207ENST00000591519 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.54■□□□□ 0.56
VPS4B-207ENST00000591519 TOP2BQ02880 1626 aa18.52■□□□□ 0.56
VPS4B-207ENST00000591519 BIVM-ERCC5R4GMW8 1640 aa18.52■□□□□ 0.55
VPS4B-207ENST00000591519 TRHP20396 242 aaPredicted RBP18.46■□□□□ 0.55
VPS4B-207ENST00000591519 GRIN2AQ12879 1464 aa18.45■□□□□ 0.54
VPS4B-207ENST00000591519 FHAD1B1AJZ9 1412 aa18.42■□□□□ 0.54
VPS4B-207ENST00000591519 NUP160Q12769 1436 aa18.41■□□□□ 0.54
VPS4B-207ENST00000591519 ERICH3Q5RHP9 1530 aa18.4■□□□□ 0.54
VPS4B-207ENST00000591519 ADAMTS12P58397 1594 aa18.4■□□□□ 0.54
VPS4B-207ENST00000591519 KCNA4P22459 653 aa18.37■□□□□ 0.53
VPS4B-207ENST00000591519 CEP170Q5SW79 1584 aa18.35■□□□□ 0.53
VPS4B-207ENST00000591519 ERCC6L2Q5T890 1561 aa18.31■□□□□ 0.52
VPS4B-207ENST00000591519 SHROOM2Q13796 1616 aa18.3■□□□□ 0.52
VPS4B-207ENST00000591519 JPH4Q96JJ6 628 aa18.27■□□□□ 0.52
VPS4B-207ENST00000591519 IGF1RP08069 1367 aa18.22■□□□□ 0.51
VPS4B-207ENST00000591519 PRG4Q92954 1404 aaPredicted RBP18.21■□□□□ 0.51
VPS4B-207ENST00000591519 KIF27Q86VH2 1401 aa18.18■□□□□ 0.5
VPS4B-207ENST00000591519 U3KPZ7 1027 aaPredicted RBP18.16■□□□□ 0.5
VPS4B-207ENST00000591519 RUSC2Q8N2Y8 1516 aa18.13■□□□□ 0.49
VPS4B-207ENST00000591519 KIAA0586Q9BVV6 1533 aa18.13■□□□□ 0.49
VPS4B-207ENST00000591519 CUL7Q14999 1698 aa18.1■□□□□ 0.49
VPS4B-207ENST00000591519 CARMIL1Q5VZK9 1371 aa18.07■□□□□ 0.48
VPS4B-207ENST00000591519 NPM1P06748 294 aaKnown RBP eCLIP18.04■□□□□ 0.48
VPS4B-207ENST00000591519 KIF13AQ9H1H9 1805 aa18■□□□□ 0.47
VPS4B-207ENST00000591519 MAPKBP1O60336 1514 aa17.98■□□□□ 0.47
VPS4B-207ENST00000591519 ABCC10Q5T3U5 1492 aa17.97■□□□□ 0.47
VPS4B-207ENST00000591519 ADCY10Q96PN6 1610 aa17.97■□□□□ 0.47
VPS4B-207ENST00000591519 FAM69CQ0P6D2 419 aa17.96■□□□□ 0.47
VPS4B-207ENST00000591519 SPINK5Q9NQ38 1064 aaPredicted RBP17.96■□□□□ 0.47
VPS4B-207ENST00000591519 PTPRGP23470 1445 aa17.95■□□□□ 0.46
VPS4B-207ENST00000591519 CARMIL2Q6F5E8 1435 aa17.93■□□□□ 0.46
VPS4B-207ENST00000591519 SLC4A2P04920 1241 aa17.93■□□□□ 0.46
VPS4B-207ENST00000591519 TNIKQ9UKE5 1360 aa17.92■□□□□ 0.46
VPS4B-207ENST00000591519 CAPN15O75808 1086 aa17.91■□□□□ 0.46
VPS4B-207ENST00000591519 RAPGEF2Q9Y4G8 1499 aa17.89■□□□□ 0.45
VPS4B-207ENST00000591519 IQGAP2Q13576 1575 aa17.89■□□□□ 0.45
VPS4B-207ENST00000591519 DIP2BQ9P265 1576 aa17.88■□□□□ 0.45
VPS4B-207ENST00000591519 DISP1Q96F81 1524 aa17.85■□□□□ 0.45
VPS4B-207ENST00000591519 ABCC2Q92887 1545 aa17.83■□□□□ 0.45
VPS4B-207ENST00000591519 UHRF1BP1LA0JNW5 1464 aa17.83■□□□□ 0.45
VPS4B-207ENST00000591519 UGGT2Q9NYU1 1516 aa17.82■□□□□ 0.44
VPS4B-207ENST00000591519 UACAQ9BZF9 1416 aa17.81■□□□□ 0.44
VPS4B-207ENST00000591519 TTBK1Q5TCY1 1321 aaPredicted RBP17.81■□□□□ 0.44
VPS4B-207ENST00000591519 PLB1Q6P1J6 1458 aa17.78■□□□□ 0.44
VPS4B-207ENST00000591519 DSG3P32926 999 aa17.78■□□□□ 0.44
VPS4B-207ENST00000591519 ASXL2Q76L83 1435 aa17.77■□□□□ 0.44
VPS4B-207ENST00000591519 KDM5BQ9UGL1 1544 aa17.75■□□□□ 0.43
VPS4B-207ENST00000591519 GLI2P10070 1586 aa17.74■□□□□ 0.43
VPS4B-207ENST00000591519 PRXQ9BXM0 1461 aa17.74■□□□□ 0.43
VPS4B-207ENST00000591519 KIAA0556O60303 1618 aa17.72■□□□□ 0.43
VPS4B-207ENST00000591519 TSPOAP1O95153 1857 aa17.72■□□□□ 0.43
VPS4B-207ENST00000591519 KDM6BO15054 1643 aa17.71■□□□□ 0.43
VPS4B-207ENST00000591519 GOLGA3Q08378 1498 aa17.68■□□□□ 0.42
VPS4B-207ENST00000591519 CTTNBP2Q8WZ74 1663 aa17.67■□□□□ 0.42
VPS4B-207ENST00000591519 EPRSP07814 1512 aaKnown RBP17.66■□□□□ 0.42
VPS4B-207ENST00000591519 ZCCHC11Q5TAX3 1644 aaKnown RBP17.65■□□□□ 0.42
VPS4B-207ENST00000591519 PPRC1Q5VV67 1664 aaKnown RBP17.64■□□□□ 0.42
VPS4B-207ENST00000591519 CSRNP3Q8WYN3 585 aa17.62■□□□□ 0.41
VPS4B-207ENST00000591519 KDM4FA0A1W2PPD8 638 aa17.61■□□□□ 0.41
VPS4B-207ENST00000591519 MAP3K4Q9Y6R4 1608 aa17.61■□□□□ 0.41
VPS4B-207ENST00000591519 ABCA8O94911 1581 aa17.6■□□□□ 0.41
VPS4B-207ENST00000591519 WDR7Q9Y4E6 1490 aa17.58■□□□□ 0.41
VPS4B-207ENST00000591519 TEX14Q8IWB6 1497 aa17.57■□□□□ 0.4
VPS4B-207ENST00000591519 COL17A1Q9UMD9 1497 aaPredicted RBP17.57■□□□□ 0.4
VPS4B-207ENST00000591519 FAM9AQ8IZU1 332 aaPredicted RBP17.56■□□□□ 0.4
VPS4B-207ENST00000591519 ABCB7O75027 752 aa17.54■□□□□ 0.4
VPS4B-207ENST00000591519 EEA1Q15075 1411 aa17.53■□□□□ 0.4
VPS4B-207ENST00000591519 APLP2Q06481 763 aa17.51■□□□□ 0.39
VPS4B-207ENST00000591519 KCNH8Q96L42 1107 aa17.51■□□□□ 0.39
VPS4B-207ENST00000591519 MAGI3Q5TCQ9 1506 aa17.51■□□□□ 0.39
VPS4B-207ENST00000591519 CD109Q6YHK3 1445 aa17.5■□□□□ 0.39
VPS4B-207ENST00000591519 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.5■□□□□ 0.39
VPS4B-207ENST00000591519 HNRNPUL2Q1KMD3 747 aaKnown RBP17.5■□□□□ 0.39
VPS4B-207ENST00000591519 P3H3Q8IVL6 736 aa17.5■□□□□ 0.39
VPS4B-207ENST00000591519 ZNF219Q9P2Y4 722 aaPredicted RBP17.49■□□□□ 0.39
VPS4B-207ENST00000591519 ATP10BO94823 1461 aa17.49■□□□□ 0.39
VPS4B-207ENST00000591519 CFAP43Q8NDM7 1665 aa17.47■□□□□ 0.39
VPS4B-207ENST00000591519 SAMD9Q5K651 1589 aa17.46■□□□□ 0.39
VPS4B-207ENST00000591519 SAMD1Q6SPF0 538 aaPredicted RBP17.43■□□□□ 0.38
VPS4B-207ENST00000591519 ADGRL1O94910 1474 aa17.4■□□□□ 0.38
VPS4B-207ENST00000591519 ARID3CA6NKF2 412 aa17.39■□□□□ 0.37
VPS4B-207ENST00000591519 PHLDB1Q86UU1 1377 aa17.39■□□□□ 0.37
VPS4B-207ENST00000591519 RAPGEF6Q8TEU7 1601 aa17.38■□□□□ 0.37
VPS4B-207ENST00000591519 ARAP3Q8WWN8 1544 aa17.37■□□□□ 0.37
VPS4B-207ENST00000591519 ABCA9Q8IUA7 1624 aa17.36■□□□□ 0.37
VPS4B-207ENST00000591519 KIF21BO75037 1637 aa17.34■□□□□ 0.37
VPS4B-207ENST00000591519 NUP153P49790 1475 aaKnown RBP17.34■□□□□ 0.37
VPS4B-207ENST00000591519 RANGAP1P46060 587 aaPredicted RBP17.33■□□□□ 0.36
VPS4B-207ENST00000591519 FHOD3Q2V2M9 1422 aa17.32■□□□□ 0.36
VPS4B-207ENST00000591519 PLEKHD1A6NEE1 506 aa17.31■□□□□ 0.36
VPS4B-207ENST00000591519 MYCNP04198 464 aaPredicted RBP17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms