RNA–Protein interactions for RNA: ENST00000591519.1

VPS4B-207, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 2 BASIC

Gene VPS4B, Length 551 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-207ENST00000591519 AEBP2Q6ZN18 517 aaPredicted RBP29.94■■■□□ 2.38
VPS4B-207ENST00000591519 CHIC1Q5VXU3 224 aa28.29■■■□□ 2.12
VPS4B-207ENST00000591519 NISCHQ9Y2I1 1504 aa26.03■■□□□ 1.76
VPS4B-207ENST00000591519 SENP3Q9H4L4 574 aaPredicted RBP25.46■■□□□ 1.67
VPS4B-207ENST00000591519 PHF23Q9BUL5 403 aaPredicted RBP25.16■■□□□ 1.62
VPS4B-207ENST00000591519 FOXD1Q16676 465 aa23.8■■□□□ 1.4
VPS4B-207ENST00000591519 CCDC180Q9P1Z9 1646 aa23.3■■□□□ 1.32
VPS4B-207ENST00000591519 ABCC9O60706 1549 aa23.25■■□□□ 1.31
VPS4B-207ENST00000591519 PLPPR3Q6T4P5 718 aa22.55■■□□□ 1.2
VPS4B-207ENST00000591519 PIAS4Q8N2W9 510 aaPredicted RBP22.25■■□□□ 1.15
VPS4B-207ENST00000591519 MSH5O43196 834 aa22.23■■□□□ 1.15
VPS4B-207ENST00000591519 PPP6R1Q9UPN7 881 aa22.23■■□□□ 1.15
VPS4B-207ENST00000591519 RB1CC1Q8TDY2 1594 aa22.17■■□□□ 1.14
VPS4B-207ENST00000591519 ADRA2BP18089 450 aa22.17■■□□□ 1.14
VPS4B-207ENST00000591519 NACADO15069 1562 aa22.07■■□□□ 1.12
VPS4B-207ENST00000591519 DCAF8L2P0C7V8 631 aa21.92■■□□□ 1.1
VPS4B-207ENST00000591519 POTEDQ86YR6 584 aa21.9■■□□□ 1.1
VPS4B-207ENST00000591519 DNAJC5BQ9UF47 199 aa21.86■■□□□ 1.09
VPS4B-207ENST00000591519 MYO15BQ96JP2 1530 aa21.83■■□□□ 1.09
VPS4B-207ENST00000591519 PABPN1Q86U42 306 aaKnown RBP eCLIP21.68■■□□□ 1.06
VPS4B-207ENST00000591519 UNC13AQ9UPW8 1703 aa21.63■■□□□ 1.05
VPS4B-207ENST00000591519 ZCCHC6Q5VYS8 1495 aaKnown RBP21.55■■□□□ 1.04
VPS4B-207ENST00000591519 DCAF1Q9Y4B6 1507 aa21.54■■□□□ 1.04
VPS4B-207ENST00000591519 BICRAQ9NZM4 1560 aa21.53■■□□□ 1.04
VPS4B-207ENST00000591519 SHROOM4Q9ULL8 1493 aa21.28■■□□□ 1
VPS4B-207ENST00000591519 SCRIBQ14160 1630 aa21.18■□□□□ 0.98
VPS4B-207ENST00000591519 CC2D2AQ9P2K1 1620 aa21.02■□□□□ 0.96
VPS4B-207ENST00000591519 EIF4G1Q04637 1599 aaKnown RBP20.99■□□□□ 0.95
VPS4B-207ENST00000591519 CECR2Q9BXF3 1484 aa20.96■□□□□ 0.95
VPS4B-207ENST00000591519 NCAPD3P42695 1498 aa20.41■□□□□ 0.86
VPS4B-207ENST00000591519 MAPK8IP2Q13387 824 aaPredicted RBP20.4■□□□□ 0.86
VPS4B-207ENST00000591519 ATAD2BQ9ULI0 1458 aa20.31■□□□□ 0.84
VPS4B-207ENST00000591519 SMARCA4P51532 1647 aa20.25■□□□□ 0.83
VPS4B-207ENST00000591519 SMARCA2P51531 1590 aa20.24■□□□□ 0.83
VPS4B-207ENST00000591519 HMGXB3Q12766 1538 aa20.19■□□□□ 0.82
VPS4B-207ENST00000591519 DMRT2Q9Y5R5 561 aa20.19■□□□□ 0.82
VPS4B-207ENST00000591519 BAZ1AQ9NRL2 1556 aaPredicted RBP20.18■□□□□ 0.82
VPS4B-207ENST00000591519 SCAF1Q9H7N4 1312 aaKnown RBP20.13■□□□□ 0.81
VPS4B-207ENST00000591519 PEG3Q9GZU2 1588 aa20.12■□□□□ 0.81
VPS4B-207ENST00000591519 DNAJC5Q9H3Z4 198 aa20.08■□□□□ 0.81
VPS4B-207ENST00000591519 BAZ1BQ9UIG0 1483 aaKnown RBP20.07■□□□□ 0.8
VPS4B-207ENST00000591519 CUX2O14529 1486 aa20.06■□□□□ 0.8
VPS4B-207ENST00000591519 ERCC6Q03468 1493 aa20.05■□□□□ 0.8
VPS4B-207ENST00000591519 MROH2BQ7Z745 1585 aa20.04■□□□□ 0.8
VPS4B-207ENST00000591519 NESP48681 1621 aa19.98■□□□□ 0.79
VPS4B-207ENST00000591519 LAMC3Q9Y6N6 1575 aa19.88■□□□□ 0.77
VPS4B-207ENST00000591519 PDS5BQ9NTI5 1447 aa19.79■□□□□ 0.76
VPS4B-207ENST00000591519 PPP4R3CPQ6ZMV5 832 aa19.79■□□□□ 0.76
VPS4B-207ENST00000591519 CADPSQ9ULU8 1353 aa19.77■□□□□ 0.76
VPS4B-207ENST00000591519 WIZO95785 1651 aa19.77■□□□□ 0.76
VPS4B-207ENST00000591519 THOC2Q8NI27 1593 aaKnown RBP19.76■□□□□ 0.75
VPS4B-207ENST00000591519 KIF21AQ7Z4S6 1674 aa19.69■□□□□ 0.74
VPS4B-207ENST00000591519 RSF1Q96T23 1441 aaPredicted RBP19.66■□□□□ 0.74
VPS4B-207ENST00000591519 MRC2Q9UBG0 1479 aa19.58■□□□□ 0.72
VPS4B-207ENST00000591519 CFTRP13569 1480 aa19.54■□□□□ 0.72
VPS4B-207ENST00000591519 WDR62O43379 1518 aa19.53■□□□□ 0.72
VPS4B-207ENST00000591519 TOP2AP11388 1531 aaKnown RBP19.53■□□□□ 0.72
VPS4B-207ENST00000591519 CEP164Q9UPV0 1460 aa19.5■□□□□ 0.71
VPS4B-207ENST00000591519 FANCD2Q9BXW9 1451 aa19.49■□□□□ 0.71
VPS4B-207ENST00000591519 DCAF8L1A6NGE4 600 aa19.48■□□□□ 0.71
VPS4B-207ENST00000591519 HOXD11P31277 338 aaPredicted RBP19.39■□□□□ 0.69
VPS4B-207ENST00000591519 CNKSR2Q8WXI2 1034 aa19.39■□□□□ 0.69
VPS4B-207ENST00000591519 CCDC88BA6NC98 1476 aa19.35■□□□□ 0.69
VPS4B-207ENST00000591519 URB2Q14146 1524 aaKnown RBP19.33■□□□□ 0.68
VPS4B-207ENST00000591519 PRDM2Q13029 1718 aa19.27■□□□□ 0.68
VPS4B-207ENST00000591519 RNF216Q9NWF9 866 aaPredicted RBP19.23■□□□□ 0.67
VPS4B-207ENST00000591519 OSCARQ8IYS5 282 aa19.21■□□□□ 0.67
VPS4B-207ENST00000591519 CACNB1Q02641 598 aaPredicted RBP19.19■□□□□ 0.66
VPS4B-207ENST00000591519 ABCC8Q09428 1581 aa19.15■□□□□ 0.66
VPS4B-207ENST00000591519 IFT140Q96RY7 1462 aa19.14■□□□□ 0.65
VPS4B-207ENST00000591519 TOPBP1Q92547 1522 aa19.14■□□□□ 0.65
VPS4B-207ENST00000591519 TRIM41Q8WV44 630 aa19.09■□□□□ 0.65
VPS4B-207ENST00000591519 ZNF608Q9ULD9 1512 aaPredicted RBP19.09■□□□□ 0.65
VPS4B-207ENST00000591519 DNMBPQ6XZF7 1577 aa19.06■□□□□ 0.64
VPS4B-207ENST00000591519 RNF39Q9H2S5 420 aa18.99■□□□□ 0.63
VPS4B-207ENST00000591519 TARBP1Q13395 1621 aaKnown RBP18.96■□□□□ 0.63
VPS4B-207ENST00000591519 EIF4G3O43432 1585 aaKnown RBP18.94■□□□□ 0.62
VPS4B-207ENST00000591519 NCBP3Q53F19 620 aaKnown RBP18.94■□□□□ 0.62
VPS4B-207ENST00000591519 POLA1P09884 1462 aaPredicted RBP18.94■□□□□ 0.62
VPS4B-207ENST00000591519 AQRO60306 1485 aaKnown RBP eCLIP18.93■□□□□ 0.62
VPS4B-207ENST00000591519 SOGA1O94964 1423 aa18.89■□□□□ 0.61
VPS4B-207ENST00000591519 RAD54L2Q9Y4B4 1467 aa18.86■□□□□ 0.61
VPS4B-207ENST00000591519 RIMBP3CA6NJZ7 1639 aa18.85■□□□□ 0.61
VPS4B-207ENST00000591519 RIMBP3BA6NNM3 1639 aa18.85■□□□□ 0.61
VPS4B-207ENST00000591519 RIMBP3Q9UFD9 1639 aa18.85■□□□□ 0.61
VPS4B-207ENST00000591519 TDRD9Q8NDG6 1382 aaKnown RBP18.82■□□□□ 0.6
VPS4B-207ENST00000591519 ARHGEF11O15085 1522 aa18.82■□□□□ 0.6
VPS4B-207ENST00000591519 CUX1P39880 1505 aa18.81■□□□□ 0.6
VPS4B-207ENST00000591519 FGD5Q6ZNL6 1462 aa18.81■□□□□ 0.6
VPS4B-207ENST00000591519 WDR97A6NE52 1622 aa18.79■□□□□ 0.6
VPS4B-207ENST00000591519 CHD1O14646 1710 aa18.78■□□□□ 0.6
VPS4B-207ENST00000591519 FBLN2P98095 1184 aa18.78■□□□□ 0.6
VPS4B-207ENST00000591519 SUPT5HO00267 1087 aaKnown RBP18.77■□□□□ 0.6
VPS4B-207ENST00000591519 NPM3O75607 178 aaKnown RBP18.76■□□□□ 0.59
VPS4B-207ENST00000591519 CYB5RLQ6IPT4 315 aa18.72■□□□□ 0.59
VPS4B-207ENST00000591519 SNAPC4Q5SXM2 1469 aa18.71■□□□□ 0.59
VPS4B-207ENST00000591519 GRIN2BQ13224 1484 aa18.7■□□□□ 0.58
VPS4B-207ENST00000591519 MAGI1Q96QZ7 1491 aaPredicted RBP18.7■□□□□ 0.58
VPS4B-207ENST00000591519 CHMP7Q8WUX9 453 aaPredicted RBP18.69■□□□□ 0.58
VPS4B-207ENST00000591519 C1QBPQ07021 282 aaKnown RBP18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms