RNA–Protein interactions for RNA: ENST00000590454.2

R3HDM4-206, Transcript of R3H domain containing 4, humanhuman

TSL 3

Gene R3HDM4, Length 1,006 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM4-206ENST00000590454 NPM1P06748 294 aaKnown RBP eCLIP36.63■■■■□ 3.45
R3HDM4-206ENST00000590454 FAM69CQ0P6D2 419 aa36.61■■■■□ 3.45
R3HDM4-206ENST00000590454 ABCC10Q5T3U5 1492 aa36.56■■■■□ 3.44
R3HDM4-206ENST00000590454 RUSC2Q8N2Y8 1516 aa36.5■■■■□ 3.43
R3HDM4-206ENST00000590454 MAPKBP1O60336 1514 aa36.48■■■■□ 3.43
R3HDM4-206ENST00000590454 CHIC1Q5VXU3 224 aa36.38■■■■□ 3.41
R3HDM4-206ENST00000590454 DIP2BQ9P265 1576 aa36.38■■■■□ 3.41
R3HDM4-206ENST00000590454 ADCY10Q96PN6 1610 aa36.37■■■■□ 3.41
R3HDM4-206ENST00000590454 KIAA0586Q9BVV6 1533 aa36.35■■■■□ 3.41
R3HDM4-206ENST00000590454 IGF1RP08069 1367 aa36.28■■■■□ 3.4
R3HDM4-206ENST00000590454 KDM6BO15054 1643 aa36.24■■■■□ 3.39
R3HDM4-206ENST00000590454 KDM4FA0A1W2PPD8 638 aa36.22■■■■□ 3.39
R3HDM4-206ENST00000590454 KIF27Q86VH2 1401 aa36.21■■■■□ 3.39
R3HDM4-206ENST00000590454 PTPRGP23470 1445 aa36.17■■■■□ 3.38
R3HDM4-206ENST00000590454 CUL7Q14999 1698 aa36.15■■■■□ 3.38
R3HDM4-206ENST00000590454 TSPOAP1O95153 1857 aa36.09■■■■□ 3.37
R3HDM4-206ENST00000590454 TTBK1Q5TCY1 1321 aaPredicted RBP36.08■■■■□ 3.37
R3HDM4-206ENST00000590454 TNIKQ9UKE5 1360 aa36.04■■■■□ 3.36
R3HDM4-206ENST00000590454 CARMIL2Q6F5E8 1435 aa36.04■■■■□ 3.36
R3HDM4-206ENST00000590454 CARMIL1Q5VZK9 1371 aa36.03■■■■□ 3.36
R3HDM4-206ENST00000590454 ABCC2Q92887 1545 aa36■■■■□ 3.35
R3HDM4-206ENST00000590454 PLB1Q6P1J6 1458 aa35.96■■■■□ 3.35
R3HDM4-206ENST00000590454 ASXL2Q76L83 1435 aa35.95■■■■□ 3.35
R3HDM4-206ENST00000590454 GLI2P10070 1586 aa35.89■■■■□ 3.34
R3HDM4-206ENST00000590454 UHRF1BP1LA0JNW5 1464 aa35.88■■■■□ 3.33
R3HDM4-206ENST00000590454 IQGAP2Q13576 1575 aa35.85■■■■□ 3.33
R3HDM4-206ENST00000590454 UACAQ9BZF9 1416 aa35.85■■■■□ 3.33
R3HDM4-206ENST00000590454 FAM9AQ8IZU1 332 aaPredicted RBP35.81■■■■□ 3.32
R3HDM4-206ENST00000590454 PPRC1Q5VV67 1664 aaKnown RBP35.8■■■■□ 3.32
R3HDM4-206ENST00000590454 DISP1Q96F81 1524 aa35.75■■■■□ 3.31
R3HDM4-206ENST00000590454 ADGRL1O94910 1474 aa35.74■■■■□ 3.31
R3HDM4-206ENST00000590454 ILDR1Q86SU0 546 aaPredicted RBP35.74■■■■□ 3.31
R3HDM4-206ENST00000590454 CSRNP3Q8WYN3 585 aa35.73■■■■□ 3.31
R3HDM4-206ENST00000590454 EEA1Q15075 1411 aa35.73■■■■□ 3.31
R3HDM4-206ENST00000590454 EPRSP07814 1512 aaKnown RBP35.72■■■■□ 3.31
R3HDM4-206ENST00000590454 KDM5BQ9UGL1 1544 aa35.72■■■■□ 3.31
R3HDM4-206ENST00000590454 COL17A1Q9UMD9 1497 aaPredicted RBP35.7■■■■□ 3.31
R3HDM4-206ENST00000590454 TEX14Q8IWB6 1497 aa35.67■■■■□ 3.3
R3HDM4-206ENST00000590454 PRXQ9BXM0 1461 aa35.67■■■■□ 3.3
R3HDM4-206ENST00000590454 RAPGEF2Q9Y4G8 1499 aa35.66■■■■□ 3.3
R3HDM4-206ENST00000590454 UGGT2Q9NYU1 1516 aa35.63■■■■□ 3.29
R3HDM4-206ENST00000590454 MAP3K4Q9Y6R4 1608 aa35.63■■■■□ 3.29
R3HDM4-206ENST00000590454 ZCCHC11Q5TAX3 1644 aaKnown RBP35.57■■■■□ 3.28
R3HDM4-206ENST00000590454 KIAA0556O60303 1618 aa35.53■■■■□ 3.28
R3HDM4-206ENST00000590454 WDR7Q9Y4E6 1490 aa35.49■■■■□ 3.27
R3HDM4-206ENST00000590454 HECW2Q9P2P5 1572 aa35.42■■■■□ 3.26
R3HDM4-206ENST00000590454 KIF21BO75037 1637 aa35.41■■■■□ 3.26
R3HDM4-206ENST00000590454 EHMT2Q96KQ7 1210 aa35.38■■■■□ 3.25
R3HDM4-206ENST00000590454 CD109Q6YHK3 1445 aa35.38■■■■□ 3.25
R3HDM4-206ENST00000590454 KCNH8Q96L42 1107 aa35.36■■■■□ 3.25
R3HDM4-206ENST00000590454 MAGI3Q5TCQ9 1506 aa35.36■■■■□ 3.25
R3HDM4-206ENST00000590454 GOLGA3Q08378 1498 aa35.33■■■■□ 3.25
R3HDM4-206ENST00000590454 CTTNBP2Q8WZ74 1663 aa35.3■■■■□ 3.24
R3HDM4-206ENST00000590454 CFAP43Q8NDM7 1665 aa35.27■■■■□ 3.24
R3HDM4-206ENST00000590454 ABCA8O94911 1581 aa35.26■■■■□ 3.24
R3HDM4-206ENST00000590454 UBTFP17480 764 aaKnown RBP35.13■■■■□ 3.21
R3HDM4-206ENST00000590454 ARAP3Q8WWN8 1544 aa35.1■■■■□ 3.21
R3HDM4-206ENST00000590454 ARID3CA6NKF2 412 aa35.04■■■■□ 3.2
R3HDM4-206ENST00000590454 PHLDB1Q86UU1 1377 aa35.02■■■■□ 3.2
R3HDM4-206ENST00000590454 RANGAP1P46060 587 aaPredicted RBP35.02■■■■□ 3.2
R3HDM4-206ENST00000590454 ATP10BO94823 1461 aa35.02■■■■□ 3.2
R3HDM4-206ENST00000590454 P3H3Q8IVL6 736 aa34.99■■■■□ 3.19
R3HDM4-206ENST00000590454 LOC105371045A0A1W2PR82 267 aa34.96■■■■□ 3.19
R3HDM4-206ENST00000590454 FBXO41Q8TF61 875 aa34.93■■■■□ 3.18
R3HDM4-206ENST00000590454 RAPGEF3O95398 923 aa34.91■■■■□ 3.18
R3HDM4-206ENST00000590454 ABCA9Q8IUA7 1624 aa34.9■■■■□ 3.18
R3HDM4-206ENST00000590454 PTPRMP28827 1452 aa34.9■■■■□ 3.18
R3HDM4-206ENST00000590454 SAMD9Q5K651 1589 aa34.89■■■■□ 3.18
R3HDM4-206ENST00000590454 NEO1Q92859 1461 aa34.85■■■■□ 3.17
R3HDM4-206ENST00000590454 ADAMTSL3P82987 1691 aa34.85■■■■□ 3.17
R3HDM4-206ENST00000590454 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP34.84■■■■□ 3.17
R3HDM4-206ENST00000590454 HNRNPUL2Q1KMD3 747 aaKnown RBP34.84■■■■□ 3.17
R3HDM4-206ENST00000590454 ARID4BQ4LE39 1312 aaPredicted RBP34.79■■■■□ 3.16
R3HDM4-206ENST00000590454 FHOD3Q2V2M9 1422 aa34.76■■■■□ 3.16
R3HDM4-206ENST00000590454 RAPGEF6Q8TEU7 1601 aa34.75■■■■□ 3.15
R3HDM4-206ENST00000590454 EFCAB5A4FU69 1503 aa34.75■■■■□ 3.15
R3HDM4-206ENST00000590454 ARHGAP35Q9NRY4 1499 aa34.74■■■■□ 3.15
R3HDM4-206ENST00000590454 BCORL1Q5H9F3 1711 aa34.7■■■■□ 3.15
R3HDM4-206ENST00000590454 FRMPD1Q5SYB0 1578 aa34.68■■■■□ 3.14
R3HDM4-206ENST00000590454 NUP153P49790 1475 aaKnown RBP34.65■■■■□ 3.14
R3HDM4-206ENST00000590454 MADDQ8WXG6 1647 aa34.65■■■■□ 3.14
R3HDM4-206ENST00000590454 PCF11O94913 1555 aaKnown RBP34.65■■■■□ 3.14
R3HDM4-206ENST00000590454 PLEKHD1A6NEE1 506 aa34.64■■■■□ 3.14
R3HDM4-206ENST00000590454 CLIP1P30622 1438 aa34.63■■■■□ 3.13
R3HDM4-206ENST00000590454 DENND4BO75064 1496 aaPredicted RBP34.61■■■■□ 3.13
R3HDM4-206ENST00000590454 LMTK3Q96Q04 1460 aa34.61■■■■□ 3.13
R3HDM4-206ENST00000590454 CEP162Q5TB80 1403 aa34.59■■■■□ 3.13
R3HDM4-206ENST00000590454 AKNAQ7Z591 1439 aa34.57■■■■□ 3.13
R3HDM4-206ENST00000590454 ARHGEF40Q8TER5 1519 aa34.56■■■■□ 3.12
R3HDM4-206ENST00000590454 FANCAO15360 1455 aa34.52■■■■□ 3.12
R3HDM4-206ENST00000590454 POGZQ7Z3K3 1410 aa34.5■■■■□ 3.11
R3HDM4-206ENST00000590454 RIMS1Q86UR5 1692 aaKnown RBP34.49■■■■□ 3.11
R3HDM4-206ENST00000590454 RICTORQ6R327 1708 aa34.48■■■■□ 3.11
R3HDM4-206ENST00000590454 CFAP74Q9C0B2 1584 aa34.46■■■■□ 3.11
R3HDM4-206ENST00000590454 HSPA2P54652 639 aa34.45■■■■□ 3.11
R3HDM4-206ENST00000590454 PLPPR3Q6T4P5 718 aa34.45■■■■□ 3.11
R3HDM4-206ENST00000590454 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP34.45■■■■□ 3.15e-6■□□□□ 9.5
R3HDM4-206ENST00000590454 FMN1Q68DA7 1419 aa34.41■■■■□ 3.1
R3HDM4-206ENST00000590454 ZMYM4Q5VZL5 1548 aa34.4■■■■□ 3.1
R3HDM4-206ENST00000590454 MAGI2Q86UL8 1455 aa34.39■■■■□ 3.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms