RNA–Protein interactions for RNA: ENST00000582772.1

MSI2-216, Transcript of musashi RNA binding protein 2, human

TSL 3

Gene MSI2, Length 398 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSI2-216	ENST00000582772	GLI2	P10070	1586 aa		10.76	□□□□□ -0.69
MSI2-216	ENST00000582772	ADCY10	Q96PN6	1610 aa		10.76	□□□□□ -0.69
MSI2-216	ENST00000582772	ADAMTSL3	P82987	1691 aa		10.74	□□□□□ -0.69
MSI2-216	ENST00000582772	TDRD9	Q8NDG6	1382 aa	Known RBP	10.74	□□□□□ -0.69
MSI2-216	ENST00000582772	PBRM1	Q86U86	1689 aa		10.73	□□□□□ -0.69
MSI2-216	ENST00000582772	NUP160	Q12769	1436 aa		10.72	□□□□□ -0.69
MSI2-216	ENST00000582772	WIZ	O95785	1651 aa		10.72	□□□□□ -0.69
MSI2-216	ENST00000582772	IQSEC2	Q5JU85	1478 aa		10.71	□□□□□ -0.69
MSI2-216	ENST00000582772	MED1	Q15648	1581 aa	Predicted RBP	10.7	□□□□□ -0.7
MSI2-216	ENST00000582772	RAD54L2	Q9Y4B4	1467 aa		10.69	□□□□□ -0.7
MSI2-216	ENST00000582772	NPM1	P06748	294 aa	Known RBP eCLIP	10.68	□□□□□ -0.7
MSI2-216	ENST00000582772	KIF21B	O75037	1637 aa		10.68	□□□□□ -0.7
MSI2-216	ENST00000582772	SRCAP	Q6ZRS2	3230 aa		10.67	□□□□□ -0.7
MSI2-216	ENST00000582772	GRIN2A	Q12879	1464 aa		10.66	□□□□□ -0.7
MSI2-216	ENST00000582772	SOGA1	O94964	1423 aa		10.65	□□□□□ -0.7
MSI2-216	ENST00000582772	MAP3K4	Q9Y6R4	1608 aa		10.65	□□□□□ -0.7
MSI2-216	ENST00000582772	TEX14	Q8IWB6	1497 aa		10.63	□□□□□ -0.71
MSI2-216	ENST00000582772	KIAA0586	Q9BVV6	1533 aa		10.6	□□□□□ -0.71
MSI2-216	ENST00000582772	PRG4	Q92954	1404 aa	Predicted RBP	10.58	□□□□□ -0.72
MSI2-216	ENST00000582772	BCORL1	Q5H9F3	1711 aa		10.56	□□□□□ -0.72
MSI2-216	ENST00000582772	ABCA5	Q8WWZ7	1642 aa		10.56	□□□□□ -0.72
MSI2-216	ENST00000582772	MADD	Q8WXG6	1647 aa		10.56	□□□□□ -0.72
MSI2-216	ENST00000582772	TOP2A	P11388	1531 aa	Known RBP	10.56	□□□□□ -0.72
MSI2-216	ENST00000582772	PLB1	Q6P1J6	1458 aa		10.55	□□□□□ -0.72
MSI2-216	ENST00000582772	LTBP4	Q8N2S1	1624 aa		10.55	□□□□□ -0.72
MSI2-216	ENST00000582772	ADAMTS12	P58397	1594 aa		10.54	□□□□□ -0.72
MSI2-216	ENST00000582772	STRC	Q7RTU9	1775 aa		10.54	□□□□□ -0.72
MSI2-216	ENST00000582772	HSPA2	P54652	639 aa		10.53	□□□□□ -0.72
MSI2-216	ENST00000582772	FGD5	Q6ZNL6	1462 aa		10.53	□□□□□ -0.72
MSI2-216	ENST00000582772	ASXL2	Q76L83	1435 aa		10.49	□□□□□ -0.73
MSI2-216	ENST00000582772	YEATS2	Q9ULM3	1422 aa		10.47	□□□□□ -0.73
MSI2-216	ENST00000582772	EPRS	P07814	1512 aa	Known RBP	10.47	□□□□□ -0.73
MSI2-216	ENST00000582772	RIMS1	Q86UR5	1692 aa	Known RBP	10.47	□□□□□ -0.73
MSI2-216	ENST00000582772	CFAP43	Q8NDM7	1665 aa		10.47	□□□□□ -0.73
MSI2-216	ENST00000582772	DMRT2	Q9Y5R5	561 aa		10.46	□□□□□ -0.73
MSI2-216	ENST00000582772	ABCC2	Q92887	1545 aa		10.46	□□□□□ -0.74
MSI2-216	ENST00000582772	RUSC2	Q8N2Y8	1516 aa		10.45	□□□□□ -0.74
MSI2-216	ENST00000582772	PREX1	Q8TCU6	1659 aa		10.44	□□□□□ -0.74
MSI2-216	ENST00000582772	PTPRT	O14522	1441 aa		10.43	□□□□□ -0.74
MSI2-216	ENST00000582772	CUL7	Q14999	1698 aa		10.42	□□□□□ -0.74
MSI2-216	ENST00000582772	JPH4	Q96JJ6	628 aa		10.41	□□□□□ -0.74
MSI2-216	ENST00000582772	MAGI3	Q5TCQ9	1506 aa		10.4	□□□□□ -0.74
MSI2-216	ENST00000582772	ABCA10	Q8WWZ4	1543 aa		10.4	□□□□□ -0.74
MSI2-216	ENST00000582772	PHF23	Q9BUL5	403 aa	Predicted RBP	10.39	□□□□□ -0.75
MSI2-216	ENST00000582772	IFFO2	Q5TF58	517 aa		10.38	□□□□□ -0.75
MSI2-216	ENST00000582772	FHAD1	B1AJZ9	1412 aa		10.38	□□□□□ -0.75
MSI2-216	ENST00000582772	CHIC1	Q5VXU3	224 aa		10.37	□□□□□ -0.75
MSI2-216	ENST00000582772	ARAP3	Q8WWN8	1544 aa		10.37	□□□□□ -0.75
MSI2-216	ENST00000582772	CCDC88B	A6NC98	1476 aa		10.36	□□□□□ -0.75
MSI2-216	ENST00000582772	TTC37	Q6PGP7	1564 aa		10.35	□□□□□ -0.75
MSI2-216	ENST00000582772	CUX1	P39880	1505 aa		10.34	□□□□□ -0.75
MSI2-216	ENST00000582772	UHRF1BP1L	A0JNW5	1464 aa		10.34	□□□□□ -0.75
MSI2-216	ENST00000582772	KDM5B	Q9UGL1	1544 aa		10.29	□□□□□ -0.76
MSI2-216	ENST00000582772	UBAP1L	F5GYI3	381 aa		10.29	□□□□□ -0.76
MSI2-216	ENST00000582772	HSPA1L	P34931	641 aa		10.29	□□□□□ -0.76
MSI2-216	ENST00000582772	SETD1A	O15047	1707 aa	Known RBP	10.28	□□□□□ -0.76
MSI2-216	ENST00000582772	ERICH3	Q5RHP9	1530 aa		10.28	□□□□□ -0.76
MSI2-216	ENST00000582772	RGS17	Q9UGC6	210 aa	Predicted RBP	10.27	□□□□□ -0.77
MSI2-216	ENST00000582772	FER1L4	A9Z1Z3	1794 aa		10.26	□□□□□ -0.77
MSI2-216	ENST00000582772	ZCCHC11	Q5TAX3	1644 aa	Known RBP	10.25	□□□□□ -0.77
MSI2-216	ENST00000582772	ARHGEF40	Q8TER5	1519 aa		10.24	□□□□□ -0.77
MSI2-216	ENST00000582772	SETD1B	Q9UPS6	1966 aa	Known RBP	10.24	□□□□□ -0.77
MSI2-216	ENST00000582772	PTPRG	P23470	1445 aa		10.23	□□□□□ -0.77
MSI2-216	ENST00000582772	CD109	Q6YHK3	1445 aa		10.23	□□□□□ -0.77
MSI2-216	ENST00000582772	WDR7	Q9Y4E6	1490 aa		10.23	□□□□□ -0.77
MSI2-216	ENST00000582772	FRMPD1	Q5SYB0	1578 aa		10.21	□□□□□ -0.78
MSI2-216	ENST00000582772	UHRF1BP1	Q6BDS2	1440 aa		10.18	□□□□□ -0.78
MSI2-216	ENST00000582772	PHLDB1	Q86UU1	1377 aa		10.18	□□□□□ -0.78
MSI2-216	ENST00000582772	FANCA	O15360	1455 aa		10.17	□□□□□ -0.78
MSI2-216	ENST00000582772	NCOA1	Q15788	1441 aa		10.16	□□□□□ -0.78
MSI2-216	ENST00000582772	POGZ	Q7Z3K3	1410 aa		10.16	□□□□□ -0.78
MSI2-216	ENST00000582772	UACA	Q9BZF9	1416 aa		10.16	□□□□□ -0.78
MSI2-216	ENST00000582772	SIGLEC1	Q9BZZ2	1709 aa		10.16	□□□□□ -0.78
MSI2-216	ENST00000582772	KIAA0556	O60303	1618 aa		10.15	□□□□□ -0.78
MSI2-216	ENST00000582772	ARID4B	Q4LE39	1312 aa	Predicted RBP	10.15	□□□□□ -0.78
MSI2-216	ENST00000582772	TNIK	Q9UKE5	1360 aa		10.14	□□□□□ -0.79
MSI2-216	ENST00000582772	UPF1	Q92900	1129 aa	Known RBP eCLIP	10.14	□□□□□ -0.79
MSI2-216	ENST00000582772	ARHGEF12	Q9NZN5	1544 aa		10.12	□□□□□ -0.79
MSI2-216	ENST00000582772	ALK	Q9UM73	1620 aa		10.12	□□□□□ -0.79
MSI2-216	ENST00000582772	POTEA	Q6S8J7	498 aa		10.11	□□□□□ -0.79
MSI2-216	ENST00000582772	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	10.08	□□□□□ -0.8
MSI2-216	ENST00000582772	TOM1	O60784	492 aa		10.08	□□□□□ -0.8
MSI2-216	ENST00000582772	RICTOR	Q6R327	1708 aa		10.07	□□□□□ -0.8
MSI2-216	ENST00000582772	NEO1	Q92859	1461 aa		10.07	□□□□□ -0.8
MSI2-216	ENST00000582772	CARMIL2	Q6F5E8	1435 aa		10.06	□□□□□ -0.8
MSI2-216	ENST00000582772	ZMYM4	Q5VZL5	1548 aa		10.05	□□□□□ -0.8
MSI2-216	ENST00000582772	CPS1	P31327	1500 aa		10.04	□□□□□ -0.8
MSI2-216	ENST00000582772	PIP4K2B	P78356	416 aa		10.04	□□□□□ -0.8
MSI2-216	ENST00000582772	PLPPR3	Q6T4P5	718 aa		10.04	□□□□□ -0.8
MSI2-216	ENST00000582772	SCAF1	Q9H7N4	1312 aa	Known RBP	10.04	□□□□□ -0.8
MSI2-216	ENST00000582772	WRN	Q14191	1432 aa	Predicted RBP eCLIP	10.03	□□□□□ -0.8
MSI2-216	ENST00000582772	PTPRK	Q15262	1439 aa		10.03	□□□□□ -0.8
MSI2-216	ENST00000582772	AKNA	Q7Z591	1439 aa		10.03	□□□□□ -0.8
MSI2-216	ENST00000582772	ABCA9	Q8IUA7	1624 aa		10.03	□□□□□ -0.8
MSI2-216	ENST00000582772	RAPGEF3	O95398	923 aa		10.02	□□□□□ -0.81
MSI2-216	ENST00000582772	CAMSAP1	Q5T5Y3	1602 aa		10.01	□□□□□ -0.81
MSI2-216	ENST00000582772	EFCAB5	A4FU69	1503 aa		10.01	□□□□□ -0.81
MSI2-216	ENST00000582772	C3	P01024	1663 aa		10	□□□□□ -0.81
MSI2-216	ENST00000582772	LRP5	O75197	1615 aa		9.99	□□□□□ -0.81
MSI2-216	ENST00000582772	FHOD3	Q2V2M9	1422 aa		9.98	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms