RNA–Protein interactions for RNA: ENST00000582772.1

MSI2-216, Transcript of musashi RNA binding protein 2, human

TSL 3

Gene MSI2, Length 398 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSI2-216	ENST00000582772	DNAJC5B	Q9UF47	199 aa		14.66	□□□□□ -0.06
MSI2-216	ENST00000582772	DNAJC5	Q9H3Z4	198 aa		14.47	□□□□□ -0.09
MSI2-216	ENST00000582772	ABCC9	O60706	1549 aa		14.45	□□□□□ -0.1
MSI2-216	ENST00000582772	NISCH	Q9Y2I1	1504 aa		14.25	□□□□□ -0.13
MSI2-216	ENST00000582772	CCDC180	Q9P1Z9	1646 aa		13.51	□□□□□ -0.25
MSI2-216	ENST00000582772	RB1CC1	Q8TDY2	1594 aa		13.36	□□□□□ -0.27
MSI2-216	ENST00000582772	CECR2	Q9BXF3	1484 aa		13.22	□□□□□ -0.29
MSI2-216	ENST00000582772	CUX2	O14529	1486 aa		13.16	□□□□□ -0.3
MSI2-216	ENST00000582772	UNC13A	Q9UPW8	1703 aa		13.13	□□□□□ -0.31
MSI2-216	ENST00000582772	CC2D2A	Q9P2K1	1620 aa		13.11	□□□□□ -0.31
MSI2-216	ENST00000582772	PABPN1	Q86U42	306 aa	Known RBP eCLIP	13.11	□□□□□ -0.31
MSI2-216	ENST00000582772	TRIM41	Q8WV44	630 aa		13.08	□□□□□ -0.32
MSI2-216	ENST00000582772	BICRA	Q9NZM4	1560 aa		13.05	□□□□□ -0.32
MSI2-216	ENST00000582772	NACAD	O15069	1562 aa		12.99	□□□□□ -0.33
MSI2-216	ENST00000582772	SHROOM4	Q9ULL8	1493 aa		12.89	□□□□□ -0.35
MSI2-216	ENST00000582772	EIF4G1	Q04637	1599 aa	Known RBP	12.8	□□□□□ -0.36
MSI2-216	ENST00000582772	AEBP2	Q6ZN18	517 aa	Predicted RBP	12.69	□□□□□ -0.38
MSI2-216	ENST00000582772	ERCC6	Q03468	1493 aa		12.57	□□□□□ -0.4
MSI2-216	ENST00000582772	ILDR1	Q86SU0	546 aa	Predicted RBP	12.53	□□□□□ -0.4
MSI2-216	ENST00000582772	MYO15B	Q96JP2	1530 aa		12.51	□□□□□ -0.41
MSI2-216	ENST00000582772	THOC2	Q8NI27	1593 aa	Known RBP	12.39	□□□□□ -0.43
MSI2-216	ENST00000582772	RIMBP3C	A6NJZ7	1639 aa		12.27	□□□□□ -0.44
MSI2-216	ENST00000582772	RIMBP3B	A6NNM3	1639 aa		12.27	□□□□□ -0.44
MSI2-216	ENST00000582772	RIMBP3	Q9UFD9	1639 aa		12.27	□□□□□ -0.44
MSI2-216	ENST00000582772	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	12.26	□□□□□ -0.45
MSI2-216	ENST00000582772	DCAF8L2	P0C7V8	631 aa		12.14	□□□□□ -0.47
MSI2-216	ENST00000582772	OSCAR	Q8IYS5	282 aa		12.14	□□□□□ -0.47
MSI2-216	ENST00000582772	ARHGEF11	O15085	1522 aa		12.09	□□□□□ -0.47
MSI2-216	ENST00000582772	TRH	P20396	242 aa	Predicted RBP	12.08	□□□□□ -0.48
MSI2-216	ENST00000582772	NES	P48681	1621 aa		12.07	□□□□□ -0.48
MSI2-216	ENST00000582772	SCRIB	Q14160	1630 aa		12.06	□□□□□ -0.48
MSI2-216	ENST00000582772	SMARCA2	P51531	1590 aa		12	□□□□□ -0.49
MSI2-216	ENST00000582772	KIF21A	Q7Z4S6	1674 aa		12	□□□□□ -0.49
MSI2-216	ENST00000582772	NCAPD3	P42695	1498 aa		11.98	□□□□□ -0.49
MSI2-216	ENST00000582772	LAMC3	Q9Y6N6	1575 aa		11.95	□□□□□ -0.5
MSI2-216	ENST00000582772	WDR62	O43379	1518 aa		11.91	□□□□□ -0.5
MSI2-216	ENST00000582772	ARAP1	Q96P48	1450 aa		11.88	□□□□□ -0.51
MSI2-216	ENST00000582772	CYB5RL	Q6IPT4	315 aa		11.86	□□□□□ -0.51
MSI2-216	ENST00000582772	LMTK3	Q96Q04	1460 aa		11.84	□□□□□ -0.51
MSI2-216	ENST00000582772	HMGXB3	Q12766	1538 aa		11.84	□□□□□ -0.51
MSI2-216	ENST00000582772	DCAF1	Q9Y4B6	1507 aa		11.84	□□□□□ -0.51
MSI2-216	ENST00000582772	SOCS7	O14512	581 aa		11.83	□□□□□ -0.52
MSI2-216	ENST00000582772	ERCC6L2	Q5T890	1561 aa		11.82	□□□□□ -0.52
MSI2-216	ENST00000582772	MRC2	Q9UBG0	1479 aa		11.82	□□□□□ -0.52
MSI2-216	ENST00000582772	PDS5B	Q9NTI5	1447 aa		11.81	□□□□□ -0.52
MSI2-216	ENST00000582772	FBXO41	Q8TF61	875 aa		11.75	□□□□□ -0.53
MSI2-216	ENST00000582772	ATAD2B	Q9ULI0	1458 aa		11.7	□□□□□ -0.54
MSI2-216	ENST00000582772	RSF1	Q96T23	1441 aa	Predicted RBP	11.68	□□□□□ -0.54
MSI2-216	ENST00000582772	KDM4F	A0A1W2PPD8	638 aa		11.63	□□□□□ -0.55
MSI2-216	ENST00000582772	HECW2	Q9P2P5	1572 aa		11.6	□□□□□ -0.55
MSI2-216	ENST00000582772	ILDR2	Q71H61	639 aa		11.6	□□□□□ -0.55
MSI2-216	ENST00000582772	ZCCHC6	Q5VYS8	1495 aa	Known RBP	11.58	□□□□□ -0.56
MSI2-216	ENST00000582772	CHD1	O14646	1710 aa		11.5	□□□□□ -0.57
MSI2-216	ENST00000582772	BAZ1B	Q9UIG0	1483 aa	Known RBP	11.49	□□□□□ -0.57
MSI2-216	ENST00000582772	CEP164	Q9UPV0	1460 aa		11.49	□□□□□ -0.57
MSI2-216	ENST00000582772	SMARCA4	P51532	1647 aa		11.48	□□□□□ -0.57
MSI2-216	ENST00000582772	KIF13A	Q9H1H9	1805 aa		11.46	□□□□□ -0.57
MSI2-216	ENST00000582772	CADPS	Q9ULU8	1353 aa		11.46	□□□□□ -0.57
MSI2-216	ENST00000582772	PEG3	Q9GZU2	1588 aa		11.44	□□□□□ -0.58
MSI2-216	ENST00000582772	DISP3	Q9P2K9	1392 aa		11.41	□□□□□ -0.58
MSI2-216	ENST00000582772	CLASP1	Q7Z460	1538 aa		11.39	□□□□□ -0.59
MSI2-216	ENST00000582772	ZNF608	Q9ULD9	1512 aa	Predicted RBP	11.37	□□□□□ -0.59
MSI2-216	ENST00000582772	SYNJ2	O15056	1496 aa		11.37	□□□□□ -0.59
MSI2-216	ENST00000582772	URB2	Q14146	1524 aa	Known RBP	11.35	□□□□□ -0.59
MSI2-216	ENST00000582772	EIF4G3	O43432	1585 aa	Known RBP	11.35	□□□□□ -0.59
MSI2-216	ENST00000582772	SPATA31D1	Q6ZQQ2	1576 aa		11.34	□□□□□ -0.59
MSI2-216	ENST00000582772	FANCD2	Q9BXW9	1451 aa		11.34	□□□□□ -0.59
MSI2-216	ENST00000582772	IFT140	Q96RY7	1462 aa		11.32	□□□□□ -0.6
MSI2-216	ENST00000582772	ADGRL1	O94910	1474 aa		11.31	□□□□□ -0.6
MSI2-216	ENST00000582772	KDM6B	O15054	1643 aa		11.29	□□□□□ -0.6
MSI2-216	ENST00000582772	GAPVD1	Q14C86	1478 aa		11.25	□□□□□ -0.61
MSI2-216	ENST00000582772	SYNJ1	O43426	1573 aa		11.2	□□□□□ -0.62
MSI2-216	ENST00000582772	CFTR	P13569	1480 aa		11.13	□□□□□ -0.63
MSI2-216	ENST00000582772	ABCC10	Q5T3U5	1492 aa		11.12	□□□□□ -0.63
MSI2-216	ENST00000582772	DIP2B	Q9P265	1576 aa		11.11	□□□□□ -0.63
MSI2-216	ENST00000582772	TARBP1	Q13395	1621 aa	Known RBP	11.09	□□□□□ -0.63
MSI2-216	ENST00000582772	PRDM2	Q13029	1718 aa		11.07	□□□□□ -0.64
MSI2-216	ENST00000582772	FBLN2	P98095	1184 aa		11.06	□□□□□ -0.64
MSI2-216	ENST00000582772	AQR	O60306	1485 aa	Known RBP eCLIP	11.06	□□□□□ -0.64
MSI2-216	ENST00000582772	MAPKBP1	O60336	1514 aa		11.04	□□□□□ -0.64
MSI2-216	ENST00000582772	TOP2B	Q02880	1626 aa		11.04	□□□□□ -0.64
MSI2-216	ENST00000582772	TOPBP1	Q92547	1522 aa		11.01	□□□□□ -0.65
MSI2-216	ENST00000582772	WDR97	A6NE52	1622 aa		11	□□□□□ -0.65
MSI2-216	ENST00000582772	FAM69C	Q0P6D2	419 aa		10.98	□□□□□ -0.65
MSI2-216	ENST00000582772	TSPOAP1	O95153	1857 aa		10.98	□□□□□ -0.65
MSI2-216	ENST00000582772	MAGI1	Q96QZ7	1491 aa	Predicted RBP	10.97	□□□□□ -0.65
MSI2-216	ENST00000582772	MROH2B	Q7Z745	1585 aa		10.97	□□□□□ -0.65
MSI2-216	ENST00000582772	SNAPC4	Q5SXM2	1469 aa		10.96	□□□□□ -0.65
MSI2-216	ENST00000582772	CERK	Q8TCT0	537 aa		10.96	□□□□□ -0.65
MSI2-216	ENST00000582772	ABCC8	Q09428	1581 aa		10.95	□□□□□ -0.66
MSI2-216	ENST00000582772	PCF11	O94913	1555 aa	Known RBP	10.9	□□□□□ -0.66
MSI2-216	ENST00000582772	SHROOM2	Q13796	1616 aa		10.9	□□□□□ -0.66
MSI2-216	ENST00000582772	DNMBP	Q6XZF7	1577 aa		10.9	□□□□□ -0.67
MSI2-216	ENST00000582772	PPRC1	Q5VV67	1664 aa	Known RBP	10.89	□□□□□ -0.67
MSI2-216	ENST00000582772	CEP170	Q5SW79	1584 aa		10.88	□□□□□ -0.67
MSI2-216	ENST00000582772	CHMP7	Q8WUX9	453 aa	Predicted RBP	10.87	□□□□□ -0.67
MSI2-216	ENST00000582772	POLA1	P09884	1462 aa	Predicted RBP	10.81	□□□□□ -0.68
MSI2-216	ENST00000582772	COL17A1	Q9UMD9	1497 aa	Predicted RBP	10.79	□□□□□ -0.68
MSI2-216	ENST00000582772	GRIN2B	Q13224	1484 aa		10.78	□□□□□ -0.68
MSI2-216	ENST00000582772	PTPRM	P28827	1452 aa		10.76	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms