RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 NPM1P06748 294 aaKnown RBP eCLIP22.94■■□□□ 1.26
SS18-219ENST00000581570 BIVM-ERCC5R4GMW8 1640 aa22.93■■□□□ 1.26
SS18-219ENST00000581570 KIF13AQ9H1H9 1805 aa22.93■■□□□ 1.26
SS18-219ENST00000581570 ABCC10Q5T3U5 1492 aa22.88■■□□□ 1.25
SS18-219ENST00000581570 MAPKBP1O60336 1514 aa22.8■■□□□ 1.24
SS18-219ENST00000581570 RUSC2Q8N2Y8 1516 aa22.77■■□□□ 1.24
SS18-219ENST00000581570 KDM4FA0A1W2PPD8 638 aa22.76■■□□□ 1.23
SS18-219ENST00000581570 DIP2BQ9P265 1576 aa22.76■■□□□ 1.23
SS18-219ENST00000581570 ADCY10Q96PN6 1610 aa22.73■■□□□ 1.23
SS18-219ENST00000581570 KDM6BO15054 1643 aa22.69■■□□□ 1.22
SS18-219ENST00000581570 KIAA0586Q9BVV6 1533 aa22.69■■□□□ 1.22
SS18-219ENST00000581570 IGF1RP08069 1367 aa22.65■■□□□ 1.22
SS18-219ENST00000581570 PTPRGP23470 1445 aa22.61■■□□□ 1.21
SS18-219ENST00000581570 TTBK1Q5TCY1 1321 aaPredicted RBP22.6■■□□□ 1.21
SS18-219ENST00000581570 TSPOAP1O95153 1857 aa22.58■■□□□ 1.21
SS18-219ENST00000581570 KIF27Q86VH2 1401 aa22.57■■□□□ 1.2
SS18-219ENST00000581570 ILDR1Q86SU0 546 aaPredicted RBP22.54■■□□□ 1.2
SS18-219ENST00000581570 TNIKQ9UKE5 1360 aa22.52■■□□□ 1.2
SS18-219ENST00000581570 CARMIL2Q6F5E8 1435 aa22.51■■□□□ 1.19
SS18-219ENST00000581570 CUL7Q14999 1698 aa22.51■■□□□ 1.19
SS18-219ENST00000581570 ABCC2Q92887 1545 aa22.5■■□□□ 1.19
SS18-219ENST00000581570 CARMIL1Q5VZK9 1371 aa22.5■■□□□ 1.19
SS18-219ENST00000581570 ASXL2Q76L83 1435 aa22.49■■□□□ 1.19
SS18-219ENST00000581570 PLB1Q6P1J6 1458 aa22.48■■□□□ 1.19
SS18-219ENST00000581570 GLI2P10070 1586 aa22.43■■□□□ 1.18
SS18-219ENST00000581570 UHRF1BP1LA0JNW5 1464 aa22.41■■□□□ 1.18
SS18-219ENST00000581570 ADGRL1O94910 1474 aa22.41■■□□□ 1.18
SS18-219ENST00000581570 UACAQ9BZF9 1416 aa22.4■■□□□ 1.18
SS18-219ENST00000581570 PPRC1Q5VV67 1664 aaKnown RBP22.38■■□□□ 1.17
SS18-219ENST00000581570 COL17A1Q9UMD9 1497 aaPredicted RBP22.36■■□□□ 1.17
SS18-219ENST00000581570 IQGAP2Q13576 1575 aa22.36■■□□□ 1.17
SS18-219ENST00000581570 EPRSP07814 1512 aaKnown RBP22.34■■□□□ 1.17
SS18-219ENST00000581570 DISP1Q96F81 1524 aa22.31■■□□□ 1.16
SS18-219ENST00000581570 KDM5BQ9UGL1 1544 aa22.31■■□□□ 1.16
SS18-219ENST00000581570 TEX14Q8IWB6 1497 aa22.3■■□□□ 1.16
SS18-219ENST00000581570 MAP3K4Q9Y6R4 1608 aa22.25■■□□□ 1.15
SS18-219ENST00000581570 UGGT2Q9NYU1 1516 aa22.22■■□□□ 1.15
SS18-219ENST00000581570 HECW2Q9P2P5 1572 aa22.21■■□□□ 1.15
SS18-219ENST00000581570 RAPGEF2Q9Y4G8 1499 aa22.21■■□□□ 1.15
SS18-219ENST00000581570 ZCCHC11Q5TAX3 1644 aaKnown RBP22.2■■□□□ 1.15
SS18-219ENST00000581570 WDR7Q9Y4E6 1490 aa22.17■■□□□ 1.14
SS18-219ENST00000581570 KIAA0556O60303 1618 aa22.16■■□□□ 1.14
SS18-219ENST00000581570 KCNH8Q96L42 1107 aa22.15■■□□□ 1.14
SS18-219ENST00000581570 CD109Q6YHK3 1445 aa22.14■■□□□ 1.13
SS18-219ENST00000581570 SENP3Q9H4L4 574 aaPredicted RBP22.11■■□□□ 1.13
SS18-219ENST00000581570 MAGI3Q5TCQ9 1506 aa22.1■■□□□ 1.13
SS18-219ENST00000581570 PHF23Q9BUL5 403 aaPredicted RBP22.09■■□□□ 1.13
SS18-219ENST00000581570 GOLGA3Q08378 1498 aa22.03■■□□□ 1.12
SS18-219ENST00000581570 CFAP43Q8NDM7 1665 aa22.01■■□□□ 1.11
SS18-219ENST00000581570 ABCA8O94911 1581 aa21.99■■□□□ 1.11
SS18-219ENST00000581570 FBXO41Q8TF61 875 aa21.97■■□□□ 1.11
SS18-219ENST00000581570 FAM9AQ8IZU1 332 aaPredicted RBP21.95■■□□□ 1.1
SS18-219ENST00000581570 ARID3CA6NKF2 412 aa21.94■■□□□ 1.1
SS18-219ENST00000581570 KIF21BO75037 1637 aa21.93■■□□□ 1.1
SS18-219ENST00000581570 ARAP3Q8WWN8 1544 aa21.93■■□□□ 1.1
SS18-219ENST00000581570 CTTNBP2Q8WZ74 1663 aa21.91■■□□□ 1.1
SS18-219ENST00000581570 PHLDB1Q86UU1 1377 aa21.88■■□□□ 1.09
SS18-219ENST00000581570 P3H3Q8IVL6 736 aa21.88■■□□□ 1.09
SS18-219ENST00000581570 ATP10BO94823 1461 aa21.87■■□□□ 1.09
SS18-219ENST00000581570 PTPRMP28827 1452 aa21.86■■□□□ 1.09
SS18-219ENST00000581570 RAPGEF3O95398 923 aa21.86■■□□□ 1.09
SS18-219ENST00000581570 PRXQ9BXM0 1461 aa21.85■■□□□ 1.09
SS18-219ENST00000581570 ARID4BQ4LE39 1312 aaPredicted RBP21.8■■□□□ 1.08
SS18-219ENST00000581570 ADAMTSL3P82987 1691 aa21.8■■□□□ 1.08
SS18-219ENST00000581570 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.79■■□□□ 1.08
SS18-219ENST00000581570 HNRNPUL2Q1KMD3 747 aaKnown RBP21.79■■□□□ 1.08
SS18-219ENST00000581570 NEO1Q92859 1461 aa21.77■■□□□ 1.08
SS18-219ENST00000581570 ABCA9Q8IUA7 1624 aa21.77■■□□□ 1.08
SS18-219ENST00000581570 PCF11O94913 1555 aaKnown RBP21.7■■□□□ 1.06
SS18-219ENST00000581570 BCORL1Q5H9F3 1711 aa21.69■■□□□ 1.06
SS18-219ENST00000581570 LMTK3Q96Q04 1460 aa21.68■■□□□ 1.06
SS18-219ENST00000581570 MADDQ8WXG6 1647 aa21.68■■□□□ 1.06
SS18-219ENST00000581570 RAPGEF6Q8TEU7 1601 aa21.66■■□□□ 1.06
SS18-219ENST00000581570 FRMPD1Q5SYB0 1578 aa21.66■■□□□ 1.06
SS18-219ENST00000581570 DENND4BO75064 1496 aaPredicted RBP21.64■■□□□ 1.06
SS18-219ENST00000581570 PLEKHD1A6NEE1 506 aa21.64■■□□□ 1.05
SS18-219ENST00000581570 HSPA2P54652 639 aa21.64■■□□□ 1.05
SS18-219ENST00000581570 PLPPR3Q6T4P5 718 aa21.64■■□□□ 1.05
SS18-219ENST00000581570 CSRNP3Q8WYN3 585 aa21.64■■□□□ 1.05
SS18-219ENST00000581570 SAMD9Q5K651 1589 aa21.63■■□□□ 1.05
SS18-219ENST00000581570 NUP153P49790 1475 aaKnown RBP21.62■■□□□ 1.05
SS18-219ENST00000581570 RANGAP1P46060 587 aaPredicted RBP21.61■■□□□ 1.05
SS18-219ENST00000581570 AKNAQ7Z591 1439 aa21.61■■□□□ 1.05
SS18-219ENST00000581570 FHOD3Q2V2M9 1422 aa21.59■■□□□ 1.05
SS18-219ENST00000581570 ARHGEF40Q8TER5 1519 aa21.59■■□□□ 1.05
SS18-219ENST00000581570 POGZQ7Z3K3 1410 aa21.58■■□□□ 1.05
SS18-219ENST00000581570 RIMS1Q86UR5 1692 aaKnown RBP21.57■■□□□ 1.04
SS18-219ENST00000581570 FANCAO15360 1455 aa21.56■■□□□ 1.04
SS18-219ENST00000581570 CERKQ8TCT0 537 aa21.54■■□□□ 1.04
SS18-219ENST00000581570 MLECQ14165 292 aa21.53■■□□□ 1.04
SS18-219ENST00000581570 RICTORQ6R327 1708 aa21.52■■□□□ 1.04
SS18-219ENST00000581570 YEATS2Q9ULM3 1422 aa21.51■■□□□ 1.03
SS18-219ENST00000581570 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.5■■□□□ 1.03
SS18-219ENST00000581570 ZFYVE16Q7Z3T8 1539 aa21.49■■□□□ 1.03
SS18-219ENST00000581570 CFAP74Q9C0B2 1584 aa21.48■■□□□ 1.03
SS18-219ENST00000581570 MAGI2Q86UL8 1455 aa21.48■■□□□ 1.03
SS18-219ENST00000581570 ZMYM4Q5VZL5 1548 aa21.48■■□□□ 1.03
SS18-219ENST00000581570 EFCAB5A4FU69 1503 aa21.47■■□□□ 1.03
SS18-219ENST00000581570 SCAPERQ9BY12 1400 aa21.44■■□□□ 1.02
SS18-219ENST00000581570 TTC37Q6PGP7 1564 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms