RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 OSCARQ8IYS5 282 aa13.95□□□□□ -0.18
SF3B3-212ENST00000568539 CUL7Q14999 1698 aa13.95□□□□□ -0.18
SF3B3-212ENST00000568539 SYNJ2O15056 1496 aa13.94□□□□□ -0.18
SF3B3-212ENST00000568539 ARHGEF11O15085 1522 aa13.92□□□□□ -0.18
SF3B3-212ENST00000568539 RAPGEF2Q9Y4G8 1499 aa13.92□□□□□ -0.18
SF3B3-212ENST00000568539 CHMP7Q8WUX9 453 aaPredicted RBP13.91□□□□□ -0.18
SF3B3-212ENST00000568539 GRIN2AQ12879 1464 aa13.89□□□□□ -0.19
SF3B3-212ENST00000568539 FBLN2P98095 1184 aa13.89□□□□□ -0.19
SF3B3-212ENST00000568539 KIF21BO75037 1637 aa13.88□□□□□ -0.19
SF3B3-212ENST00000568539 GOLGA3Q08378 1498 aa13.84□□□□□ -0.19
SF3B3-212ENST00000568539 NUP160Q12769 1436 aa13.83□□□□□ -0.2
SF3B3-212ENST00000568539 NCBP3Q53F19 620 aaKnown RBP13.82□□□□□ -0.2
SF3B3-212ENST00000568539 CHD1O14646 1710 aa13.81□□□□□ -0.2
SF3B3-212ENST00000568539 EHMT2Q96KQ7 1210 aa13.81□□□□□ -0.2
SF3B3-212ENST00000568539 CEP170Q5SW79 1584 aa13.8□□□□□ -0.2
SF3B3-212ENST00000568539 MSH5O43196 834 aa13.8□□□□□ -0.2
SF3B3-212ENST00000568539 TRHP20396 242 aaPredicted RBP13.79□□□□□ -0.2
SF3B3-212ENST00000568539 LOC105371045A0A1W2PR82 267 aa13.78□□□□□ -0.2
SF3B3-212ENST00000568539 ARAP1Q96P48 1450 aa13.77□□□□□ -0.21
SF3B3-212ENST00000568539 KIAA0586Q9BVV6 1533 aa13.77□□□□□ -0.21
SF3B3-212ENST00000568539 UBTFP17480 764 aaKnown RBP13.76□□□□□ -0.21
SF3B3-212ENST00000568539 CYB5RLQ6IPT4 315 aa13.75□□□□□ -0.21
SF3B3-212ENST00000568539 CLASP1Q7Z460 1538 aa13.74□□□□□ -0.21
SF3B3-212ENST00000568539 TNIKQ9UKE5 1360 aa13.73□□□□□ -0.21
SF3B3-212ENST00000568539 IQGAP2Q13576 1575 aa13.71□□□□□ -0.22
SF3B3-212ENST00000568539 NPM3O75607 178 aaKnown RBP13.69□□□□□ -0.22
SF3B3-212ENST00000568539 JPH4Q96JJ6 628 aa13.69□□□□□ -0.22
SF3B3-212ENST00000568539 CTTNBP2Q8WZ74 1663 aa13.69□□□□□ -0.22
SF3B3-212ENST00000568539 UGGT2Q9NYU1 1516 aa13.66□□□□□ -0.22
SF3B3-212ENST00000568539 SLC4A1APQ9BWU0 796 aaKnown RBP13.66□□□□□ -0.22
SF3B3-212ENST00000568539 SHROOM2Q13796 1616 aa13.65□□□□□ -0.22
SF3B3-212ENST00000568539 PRG4Q92954 1404 aaPredicted RBP13.64□□□□□ -0.23
SF3B3-212ENST00000568539 RANGAP1P46060 587 aaPredicted RBP13.63□□□□□ -0.23
SF3B3-212ENST00000568539 CNKSR2Q8WXI2 1034 aa13.62□□□□□ -0.23
SF3B3-212ENST00000568539 DISP1Q96F81 1524 aa13.62□□□□□ -0.23
SF3B3-212ENST00000568539 CEP162Q5TB80 1403 aa13.62□□□□□ -0.23
SF3B3-212ENST00000568539 SCAF1Q9H7N4 1312 aaKnown RBP13.62□□□□□ -0.23
SF3B3-212ENST00000568539 CLIP1P30622 1438 aa13.6□□□□□ -0.23
SF3B3-212ENST00000568539 CARMIL2Q6F5E8 1435 aa13.6□□□□□ -0.23
SF3B3-212ENST00000568539 EFCAB5A4FU69 1503 aa13.59□□□□□ -0.23
SF3B3-212ENST00000568539 SAMD9Q5K651 1589 aa13.59□□□□□ -0.23
SF3B3-212ENST00000568539 ARHGAP35Q9NRY4 1499 aa13.59□□□□□ -0.23
SF3B3-212ENST00000568539 ERCC6L2Q5T890 1561 aa13.58□□□□□ -0.23
SF3B3-212ENST00000568539 KIAA0556O60303 1618 aa13.57□□□□□ -0.24
SF3B3-212ENST00000568539 P3H3Q8IVL6 736 aa13.56□□□□□ -0.24
SF3B3-212ENST00000568539 FHOD3Q2V2M9 1422 aa13.55□□□□□ -0.24
SF3B3-212ENST00000568539 PTPRGP23470 1445 aa13.51□□□□□ -0.25
SF3B3-212ENST00000568539 TTBK1Q5TCY1 1321 aaPredicted RBP13.48□□□□□ -0.25
SF3B3-212ENST00000568539 FMN1Q68DA7 1419 aa13.47□□□□□ -0.25
SF3B3-212ENST00000568539 PLB1Q6P1J6 1458 aa13.44□□□□□ -0.26
SF3B3-212ENST00000568539 VPS8Q8N3P4 1428 aa13.43□□□□□ -0.26
SF3B3-212ENST00000568539 UACAQ9BZF9 1416 aa13.43□□□□□ -0.26
SF3B3-212ENST00000568539 ABCA8O94911 1581 aa13.42□□□□□ -0.26
SF3B3-212ENST00000568539 UHRF1BP1LA0JNW5 1464 aa13.41□□□□□ -0.26
SF3B3-212ENST00000568539 CASKIN1Q8WXD9 1431 aa13.4□□□□□ -0.26
SF3B3-212ENST00000568539 MAPK8IP2Q13387 824 aaPredicted RBP13.4□□□□□ -0.26
SF3B3-212ENST00000568539 ABCC2Q92887 1545 aa13.39□□□□□ -0.27
SF3B3-212ENST00000568539 PCF11O94913 1555 aaKnown RBP13.39□□□□□ -0.27
SF3B3-212ENST00000568539 RAPGEF6Q8TEU7 1601 aa13.39□□□□□ -0.27
SF3B3-212ENST00000568539 NUP153P49790 1475 aaKnown RBP13.38□□□□□ -0.27
SF3B3-212ENST00000568539 FYCO1Q9BQS8 1478 aa13.38□□□□□ -0.27
SF3B3-212ENST00000568539 ILDR1Q86SU0 546 aaPredicted RBP13.38□□□□□ -0.27
SF3B3-212ENST00000568539 ADCY10Q96PN6 1610 aa13.36□□□□□ -0.27
SF3B3-212ENST00000568539 ATP1B4Q9UN42 357 aaPredicted RBP13.35□□□□□ -0.27
SF3B3-212ENST00000568539 HECW1Q76N89 1606 aa13.35□□□□□ -0.27
SF3B3-212ENST00000568539 KDM5BQ9UGL1 1544 aa13.34□□□□□ -0.27
SF3B3-212ENST00000568539 ATP10BO94823 1461 aa13.33□□□□□ -0.28
SF3B3-212ENST00000568539 EPRSP07814 1512 aaKnown RBP13.33□□□□□ -0.28
SF3B3-212ENST00000568539 ARID3CA6NKF2 412 aa13.32□□□□□ -0.28
SF3B3-212ENST00000568539 CCDC18Q5T9S5 1454 aa13.31□□□□□ -0.28
SF3B3-212ENST00000568539 CDK13Q14004 1512 aaKnown RBP13.3□□□□□ -0.28
SF3B3-212ENST00000568539 NPM1P06748 294 aaKnown RBP eCLIP13.29□□□□□ -0.28
SF3B3-212ENST00000568539 KIF13AQ9H1H9 1805 aa13.29□□□□□ -0.28
SF3B3-212ENST00000568539 MAP3K1Q13233 1512 aa13.28□□□□□ -0.28
SF3B3-212ENST00000568539 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.27□□□□□ -0.29
SF3B3-212ENST00000568539 HNRNPUL2Q1KMD3 747 aaKnown RBP13.27□□□□□ -0.29
SF3B3-212ENST00000568539 ZCCHC11Q5TAX3 1644 aaKnown RBP13.27□□□□□ -0.29
SF3B3-212ENST00000568539 TIAM1Q13009 1591 aa13.26□□□□□ -0.29
SF3B3-212ENST00000568539 LRRIQ1Q96JM4 1722 aa13.26□□□□□ -0.29
SF3B3-212ENST00000568539 RNF216Q9NWF9 866 aaPredicted RBP13.26□□□□□ -0.29
SF3B3-212ENST00000568539 APLP2Q06481 763 aa13.25□□□□□ -0.29
SF3B3-212ENST00000568539 CDK11AQ9UQ88 783 aaPredicted RBP13.24□□□□□ -0.29
SF3B3-212ENST00000568539 MAPKBP1O60336 1514 aa13.23□□□□□ -0.29
SF3B3-212ENST00000568539 ASXL2Q76L83 1435 aa13.23□□□□□ -0.29
SF3B3-212ENST00000568539 CFAP43Q8NDM7 1665 aa13.23□□□□□ -0.29
SF3B3-212ENST00000568539 MAGI3Q5TCQ9 1506 aa13.23□□□□□ -0.29
SF3B3-212ENST00000568539 PLEKHD1A6NEE1 506 aa13.22□□□□□ -0.29
SF3B3-212ENST00000568539 ZBTB22O15209 634 aa13.22□□□□□ -0.29
SF3B3-212ENST00000568539 KANK4Q5T7N3 995 aaPredicted RBP13.22□□□□□ -0.29
SF3B3-212ENST00000568539 LRRC9Q6ZRR7 1453 aa13.21□□□□□ -0.3
SF3B3-212ENST00000568539 WDR7Q9Y4E6 1490 aa13.21□□□□□ -0.3
SF3B3-212ENST00000568539 TROQ12816 1431 aaPredicted RBP13.21□□□□□ -0.3
SF3B3-212ENST00000568539 MTUS2Q5JR59 1369 aa13.2□□□□□ -0.3
SF3B3-212ENST00000568539 DMRT2Q9Y5R5 561 aa13.19□□□□□ -0.3
SF3B3-212ENST00000568539 EHBP1L1Q8N3D4 1523 aa13.18□□□□□ -0.3
SF3B3-212ENST00000568539 POTEDQ86YR6 584 aa13.17□□□□□ -0.3
SF3B3-212ENST00000568539 KDM4FA0A1W2PPD8 638 aa13.16□□□□□ -0.3
SF3B3-212ENST00000568539 PPARGC1BQ86YN6 1023 aaKnown RBP13.15□□□□□ -0.3
SF3B3-212ENST00000568539 KCNH8Q96L42 1107 aa13.15□□□□□ -0.3
SF3B3-212ENST00000568539 ABCC10Q5T3U5 1492 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms