RNA–Protein interactions for RNA: ENST00000566843.1

COMMD4-215, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 2,284 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-215ENST00000566843 URB2Q14146 1524 aaKnown RBP22.48■■□□□ 1.19
COMMD4-215ENST00000566843 KIF27Q86VH2 1401 aa22.47■■□□□ 1.19
COMMD4-215ENST00000566843 TOPBP1Q92547 1522 aa22.47■■□□□ 1.19
COMMD4-215ENST00000566843 DNMBPQ6XZF7 1577 aa22.46■■□□□ 1.19
COMMD4-215ENST00000566843 FGD5Q6ZNL6 1462 aa22.45■■□□□ 1.19
COMMD4-215ENST00000566843 MAP3K1Q13233 1512 aa22.45■■□□□ 1.19
COMMD4-215ENST00000566843 RAB3GAP2Q9H2M9 1393 aa22.45■■□□□ 1.18
COMMD4-215ENST00000566843 KCNH8Q96L42 1107 aa22.43■■□□□ 1.18
COMMD4-215ENST00000566843 ERCC6Q03468 1493 aa22.42■■□□□ 1.18
COMMD4-215ENST00000566843 TIAM1Q13009 1591 aa22.37■■□□□ 1.17
COMMD4-215ENST00000566843 POLA1P09884 1462 aaPredicted RBP22.37■■□□□ 1.17
COMMD4-215ENST00000566843 SETD5Q9C0A6 1442 aa22.36■■□□□ 1.17
COMMD4-215ENST00000566843 MRC2Q9UBG0 1479 aa22.36■■□□□ 1.17
COMMD4-215ENST00000566843 RAD54L2Q9Y4B4 1467 aa22.35■■□□□ 1.17
COMMD4-215ENST00000566843 WDR97A6NE52 1622 aa22.34■■□□□ 1.17
COMMD4-215ENST00000566843 TIMELESSQ9UNS1 1208 aa22.31■■□□□ 1.16
COMMD4-215ENST00000566843 PPP1R15AO75807 674 aaPredicted RBP22.3■■□□□ 1.16
COMMD4-215ENST00000566843 ITGAEP38570 1179 aa22.29■■□□□ 1.16
COMMD4-215ENST00000566843 FKBP8Q14318 412 aa22.29■■□□□ 1.16
COMMD4-215ENST00000566843 LRRC9Q6ZRR7 1453 aa22.27■■□□□ 1.16
COMMD4-215ENST00000566843 CCER2I3L3R5 266 aa22.26■■□□□ 1.15
COMMD4-215ENST00000566843 DDX10Q13206 875 aaKnown RBP22.26■■□□□ 1.15
COMMD4-215ENST00000566843 BCANQ96GW7 911 aa22.23■■□□□ 1.15
COMMD4-215ENST00000566843 WDR62O43379 1518 aa22.22■■□□□ 1.15
COMMD4-215ENST00000566843 PHLDB1Q86UU1 1377 aa22.21■■□□□ 1.15
COMMD4-215ENST00000566843 ABCA10Q8WWZ4 1543 aa22.2■■□□□ 1.14
COMMD4-215ENST00000566843 CFAP43Q8NDM7 1665 aa22.2■■□□□ 1.14
COMMD4-215ENST00000566843 THOC2Q8NI27 1593 aaKnown RBP22.2■■□□□ 1.14
COMMD4-215ENST00000566843 SIN3AQ96ST3 1273 aa22.19■■□□□ 1.14
COMMD4-215ENST00000566843 IGF1RP08069 1367 aa22.19■■□□□ 1.14
COMMD4-215ENST00000566843 NEFLP07196 543 aa22.17■■□□□ 1.14
COMMD4-215ENST00000566843 TDRD9Q8NDG6 1382 aaKnown RBP22.16■■□□□ 1.14
COMMD4-215ENST00000566843 RBM19Q9Y4C8 960 aaKnown RBP22.15■■□□□ 1.14
COMMD4-215ENST00000566843 FHAD1B1AJZ9 1412 aa22.13■■□□□ 1.13
COMMD4-215ENST00000566843 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.12■■□□□ 1.13
COMMD4-215ENST00000566843 TARBP1Q13395 1621 aaKnown RBP22.11■■□□□ 1.13
COMMD4-215ENST00000566843 BCL11AQ9H165 835 aa22.1■■□□□ 1.13
COMMD4-215ENST00000566843 ANP32CO43423 234 aa22.1■■□□□ 1.13
COMMD4-215ENST00000566843 CARMIL1Q5VZK9 1371 aa22.08■■□□□ 1.13
COMMD4-215ENST00000566843 PCF11O94913 1555 aaKnown RBP22.07■■□□□ 1.12
COMMD4-215ENST00000566843 FAM50AQ14320 339 aaKnown RBP22.06■■□□□ 1.12
COMMD4-215ENST00000566843 IFT140Q96RY7 1462 aa22.05■■□□□ 1.12
COMMD4-215ENST00000566843 AQRO60306 1485 aaKnown RBP eCLIP22.04■■□□□ 1.12
COMMD4-215ENST00000566843 GAPVD1Q14C86 1478 aa22.04■■□□□ 1.12
COMMD4-215ENST00000566843 ZNF608Q9ULD9 1512 aaPredicted RBP22.03■■□□□ 1.12
COMMD4-215ENST00000566843 TRIM52Q96A61 297 aa22.03■■□□□ 1.12
COMMD4-215ENST00000566843 ABCA5Q8WWZ7 1642 aa22.02■■□□□ 1.12
COMMD4-215ENST00000566843 FYCO1Q9BQS8 1478 aa21.99■■□□□ 1.11
COMMD4-215ENST00000566843 HIRIP3Q9BW71 556 aaPredicted RBP21.96■■□□□ 1.11
COMMD4-215ENST00000566843 CASKIN1Q8WXD9 1431 aa21.94■■□□□ 1.1
COMMD4-215ENST00000566843 EFCAB5A4FU69 1503 aa21.94■■□□□ 1.1
COMMD4-215ENST00000566843 TONSLQ96HA7 1378 aa21.93■■□□□ 1.1
COMMD4-215ENST00000566843 FANCIQ9NVI1 1328 aa21.91■■□□□ 1.1
COMMD4-215ENST00000566843 MSH5O43196 834 aa21.91■■□□□ 1.1
COMMD4-215ENST00000566843 UACAQ9BZF9 1416 aa21.9■■□□□ 1.1
COMMD4-215ENST00000566843 CCDC18Q5T9S5 1454 aa21.9■■□□□ 1.1
COMMD4-215ENST00000566843 FGD6Q6ZV73 1430 aa21.89■■□□□ 1.1
COMMD4-215ENST00000566843 HFM1A2PYH4 1435 aa21.88■■□□□ 1.09
COMMD4-215ENST00000566843 EIF4G3O43432 1585 aaKnown RBP21.88■■□□□ 1.09
COMMD4-215ENST00000566843 FHOD3Q2V2M9 1422 aa21.87■■□□□ 1.09
COMMD4-215ENST00000566843 GRIN2BQ13224 1484 aa21.87■■□□□ 1.09
COMMD4-215ENST00000566843 KDM5BQ9UGL1 1544 aa21.87■■□□□ 1.09
COMMD4-215ENST00000566843 CUL7Q14999 1698 aa21.86■■□□□ 1.09
COMMD4-215ENST00000566843 PBRM1Q86U86 1689 aa21.86■■□□□ 1.09
COMMD4-215ENST00000566843 PTPN23Q9H3S7 1636 aa21.86■■□□□ 1.09
COMMD4-215ENST00000566843 ERICH6BQ5W0A0 696 aa21.83■■□□□ 1.09
COMMD4-215ENST00000566843 P3H3Q8IVL6 736 aa21.82■■□□□ 1.08
COMMD4-215ENST00000566843 PTPRKQ15262 1439 aa21.81■■□□□ 1.08
COMMD4-215ENST00000566843 CDK11AQ9UQ88 783 aaPredicted RBP21.8■■□□□ 1.08
COMMD4-215ENST00000566843 SNAPC4Q5SXM2 1469 aa21.79■■□□□ 1.08
COMMD4-215ENST00000566843 ATP1B4Q9UN42 357 aaPredicted RBP21.78■■□□□ 1.08
COMMD4-215ENST00000566843 CTTNBP2Q8WZ74 1663 aa21.78■■□□□ 1.08
COMMD4-215ENST00000566843 HNRNPUQ00839 825 aaKnown RBP eCLIP21.77■■□□□ 1.08
COMMD4-215ENST00000566843 NAIPQ13075 1403 aa21.77■■□□□ 1.08
COMMD4-215ENST00000566843 FMN1Q68DA7 1419 aa21.77■■□□□ 1.08
COMMD4-215ENST00000566843 ADAMTS12P58397 1594 aa21.75■■□□□ 1.07
COMMD4-215ENST00000566843 NCOA2Q15596 1464 aa21.73■■□□□ 1.07
COMMD4-215ENST00000566843 WASHC2AQ641Q2 1341 aa21.7■■□□□ 1.06
COMMD4-215ENST00000566843 FBLN2P98095 1184 aa21.69■■□□□ 1.06
COMMD4-215ENST00000566843 MYOM3Q5VTT5 1437 aa21.69■■□□□ 1.06
COMMD4-215ENST00000566843 PPP4R2Q9NY27 417 aa21.69■■□□□ 1.06
COMMD4-215ENST00000566843 MTUS2Q5JR59 1369 aa21.69■■□□□ 1.06
COMMD4-215ENST00000566843 MAGI1Q96QZ7 1491 aaPredicted RBP21.67■■□□□ 1.06
COMMD4-215ENST00000566843 LRRIQ1Q96JM4 1722 aa21.67■■□□□ 1.06
COMMD4-215ENST00000566843 HSPA5P11021 654 aaKnown RBP21.66■■□□□ 1.06
COMMD4-215ENST00000566843 CHMP7Q8WUX9 453 aaPredicted RBP21.66■■□□□ 1.06
COMMD4-215ENST00000566843 IRX6P78412 446 aaPredicted RBP21.66■■□□□ 1.06
COMMD4-215ENST00000566843 CNTLNQ9NXG0 1405 aa21.65■■□□□ 1.06
COMMD4-215ENST00000566843 SAMD9Q5K651 1589 aa21.65■■□□□ 1.06
COMMD4-215ENST00000566843 SUPT6HQ7KZ85 1726 aaKnown RBP21.64■■□□□ 1.06
COMMD4-215ENST00000566843 HECW1Q76N89 1606 aa21.64■■□□□ 1.06
COMMD4-215ENST00000566843 ERICH6Q7L0X2 663 aa21.63■■□□□ 1.05
COMMD4-215ENST00000566843 MYT1LQ9UL68 1186 aa21.63■■□□□ 1.05
COMMD4-215ENST00000566843 GCC2Q8IWJ2 1684 aa21.62■■□□□ 1.05
COMMD4-215ENST00000566843 EHBP1L1Q8N3D4 1523 aa21.62■■□□□ 1.05
COMMD4-215ENST00000566843 SYNJ2O15056 1496 aa21.62■■□□□ 1.05
COMMD4-215ENST00000566843 DENND4BO75064 1496 aaPredicted RBP21.62■■□□□ 1.05
COMMD4-215ENST00000566843 ARHGEF11O15085 1522 aa21.61■■□□□ 1.05
COMMD4-215ENST00000566843 GRIN2AQ12879 1464 aa21.61■■□□□ 1.05
COMMD4-215ENST00000566843 UGGT2Q9NYU1 1516 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms