RNA–Protein interactions for RNA: ENST00000565990.2

SF3B3-206, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-206ENST00000565990 GOLGA3Q08378 1498 aa20.64■□□□□ 0.89
SF3B3-206ENST00000565990 CTTNBP2Q8WZ74 1663 aa20.64■□□□□ 0.89
SF3B3-206ENST00000565990 JPH4Q96JJ6 628 aa20.63■□□□□ 0.89
SF3B3-206ENST00000565990 SHROOM2Q13796 1616 aa20.62■□□□□ 0.89
SF3B3-206ENST00000565990 IQGAP2Q13576 1575 aa20.59■□□□□ 0.89
SF3B3-206ENST00000565990 UBTFP17480 764 aaKnown RBP20.57■□□□□ 0.88
SF3B3-206ENST00000565990 LOC105371045A0A1W2PR82 267 aa20.54■□□□□ 0.88
SF3B3-206ENST00000565990 EHMT2Q96KQ7 1210 aa20.54■□□□□ 0.88
SF3B3-206ENST00000565990 UGGT2Q9NYU1 1516 aa20.53■□□□□ 0.88
SF3B3-206ENST00000565990 TNIKQ9UKE5 1360 aa20.52■□□□□ 0.88
SF3B3-206ENST00000565990 PRG4Q92954 1404 aaPredicted RBP20.51■□□□□ 0.87
SF3B3-206ENST00000565990 ARHGEF11O15085 1522 aa20.48■□□□□ 0.87
SF3B3-206ENST00000565990 DISP1Q96F81 1524 aa20.47■□□□□ 0.87
SF3B3-206ENST00000565990 ERCC6L2Q5T890 1561 aa20.46■□□□□ 0.87
SF3B3-206ENST00000565990 RIMBP3CA6NJZ7 1639 aa20.45■□□□□ 0.87
SF3B3-206ENST00000565990 RIMBP3BA6NNM3 1639 aa20.45■□□□□ 0.87
SF3B3-206ENST00000565990 RIMBP3Q9UFD9 1639 aa20.45■□□□□ 0.87
SF3B3-206ENST00000565990 CARMIL2Q6F5E8 1435 aa20.44■□□□□ 0.86
SF3B3-206ENST00000565990 SAMD9Q5K651 1589 aa20.41■□□□□ 0.86
SF3B3-206ENST00000565990 KIAA0556O60303 1618 aa20.38■□□□□ 0.85
SF3B3-206ENST00000565990 EFCAB5A4FU69 1503 aa20.36■□□□□ 0.85
SF3B3-206ENST00000565990 RANGAP1P46060 587 aaPredicted RBP20.34■□□□□ 0.85
SF3B3-206ENST00000565990 ARAP1Q96P48 1450 aa20.34■□□□□ 0.85
SF3B3-206ENST00000565990 ARHGAP35Q9NRY4 1499 aa20.33■□□□□ 0.85
SF3B3-206ENST00000565990 PTPRGP23470 1445 aa20.32■□□□□ 0.84
SF3B3-206ENST00000565990 P3H3Q8IVL6 736 aa20.31■□□□□ 0.84
SF3B3-206ENST00000565990 CYB5RLQ6IPT4 315 aa20.3■□□□□ 0.84
SF3B3-206ENST00000565990 CLIP1P30622 1438 aa20.28■□□□□ 0.84
SF3B3-206ENST00000565990 CEP162Q5TB80 1403 aa20.27■□□□□ 0.84
SF3B3-206ENST00000565990 FHOD3Q2V2M9 1422 aa20.24■□□□□ 0.83
SF3B3-206ENST00000565990 UACAQ9BZF9 1416 aa20.2■□□□□ 0.82
SF3B3-206ENST00000565990 UHRF1BP1LA0JNW5 1464 aa20.19■□□□□ 0.82
SF3B3-206ENST00000565990 ABCA8O94911 1581 aa20.18■□□□□ 0.82
SF3B3-206ENST00000565990 TTBK1Q5TCY1 1321 aaPredicted RBP20.18■□□□□ 0.82
SF3B3-206ENST00000565990 FMN1Q68DA7 1419 aa20.18■□□□□ 0.82
SF3B3-206ENST00000565990 PLB1Q6P1J6 1458 aa20.16■□□□□ 0.82
SF3B3-206ENST00000565990 ADCY10Q96PN6 1610 aa20.15■□□□□ 0.82
SF3B3-206ENST00000565990 ABCC2Q92887 1545 aa20.13■□□□□ 0.81
SF3B3-206ENST00000565990 RAPGEF6Q8TEU7 1601 aa20.12■□□□□ 0.81
SF3B3-206ENST00000565990 KDM5BQ9UGL1 1544 aa20.08■□□□□ 0.81
SF3B3-206ENST00000565990 CASKIN1Q8WXD9 1431 aa20.07■□□□□ 0.8
SF3B3-206ENST00000565990 NUP153P49790 1475 aaKnown RBP20.05■□□□□ 0.8
SF3B3-206ENST00000565990 NPM1P06748 294 aaKnown RBP eCLIP20.05■□□□□ 0.8
SF3B3-206ENST00000565990 ATP10BO94823 1461 aa20.04■□□□□ 0.8
SF3B3-206ENST00000565990 VPS8Q8N3P4 1428 aa20.03■□□□□ 0.8
SF3B3-206ENST00000565990 FYCO1Q9BQS8 1478 aa20.01■□□□□ 0.79
SF3B3-206ENST00000565990 ZCCHC11Q5TAX3 1644 aaKnown RBP20.01■□□□□ 0.79
SF3B3-206ENST00000565990 LRRIQ1Q96JM4 1722 aa20■□□□□ 0.79
SF3B3-206ENST00000565990 HECW1Q76N89 1606 aa20■□□□□ 0.79
SF3B3-206ENST00000565990 PCF11O94913 1555 aaKnown RBP20■□□□□ 0.79
SF3B3-206ENST00000565990 EPRSP07814 1512 aaKnown RBP19.98■□□□□ 0.79
SF3B3-206ENST00000565990 MAPKBP1O60336 1514 aa19.97■□□□□ 0.79
SF3B3-206ENST00000565990 ATP1B4Q9UN42 357 aaPredicted RBP19.96■□□□□ 0.79
SF3B3-206ENST00000565990 ARID3CA6NKF2 412 aa19.92■□□□□ 0.78
SF3B3-206ENST00000565990 CCDC18Q5T9S5 1454 aa19.92■□□□□ 0.78
SF3B3-206ENST00000565990 ASXL2Q76L83 1435 aa19.91■□□□□ 0.78
SF3B3-206ENST00000565990 PLEKHD1A6NEE1 506 aa19.9■□□□□ 0.78
SF3B3-206ENST00000565990 CDK13Q14004 1512 aaKnown RBP19.9■□□□□ 0.78
SF3B3-206ENST00000565990 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.89■□□□□ 0.77
SF3B3-206ENST00000565990 MAP3K1Q13233 1512 aa19.89■□□□□ 0.77
SF3B3-206ENST00000565990 HNRNPUL2Q1KMD3 747 aaKnown RBP19.89■□□□□ 0.77
SF3B3-206ENST00000565990 CDK11AQ9UQ88 783 aaPredicted RBP19.88■□□□□ 0.77
SF3B3-206ENST00000565990 WDR7Q9Y4E6 1490 aa19.86■□□□□ 0.77
SF3B3-206ENST00000565990 ABCC10Q5T3U5 1492 aa19.83■□□□□ 0.76
SF3B3-206ENST00000565990 TIAM1Q13009 1591 aa19.82■□□□□ 0.76
SF3B3-206ENST00000565990 MAGI3Q5TCQ9 1506 aa19.81■□□□□ 0.76
SF3B3-206ENST00000565990 CFAP43Q8NDM7 1665 aa19.81■□□□□ 0.76
SF3B3-206ENST00000565990 KIF13AQ9H1H9 1805 aa19.81■□□□□ 0.76
SF3B3-206ENST00000565990 GLI2P10070 1586 aa19.8■□□□□ 0.76
SF3B3-206ENST00000565990 TROQ12816 1431 aaPredicted RBP19.8■□□□□ 0.76
SF3B3-206ENST00000565990 KCNH8Q96L42 1107 aa19.8■□□□□ 0.76
SF3B3-206ENST00000565990 APLP2Q06481 763 aa19.78■□□□□ 0.76
SF3B3-206ENST00000565990 AEBP2Q6ZN18 517 aaPredicted RBP19.78■□□□□ 0.76
SF3B3-206ENST00000565990 DIP2BQ9P265 1576 aa19.78■□□□□ 0.76
SF3B3-206ENST00000565990 FAM69CQ0P6D2 419 aa19.77■□□□□ 0.76
SF3B3-206ENST00000565990 KANK4Q5T7N3 995 aaPredicted RBP19.76■□□□□ 0.75
SF3B3-206ENST00000565990 LRRC9Q6ZRR7 1453 aa19.74■□□□□ 0.75
SF3B3-206ENST00000565990 ABCA9Q8IUA7 1624 aa19.73■□□□□ 0.75
SF3B3-206ENST00000565990 MTUS2Q5JR59 1369 aa19.72■□□□□ 0.75
SF3B3-206ENST00000565990 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.71■□□□□ 0.758e-7■■■■□ 22.1
SF3B3-206ENST00000565990 TRHP20396 242 aaPredicted RBP19.71■□□□□ 0.75
SF3B3-206ENST00000565990 KIF14Q15058 1648 aa19.7■□□□□ 0.74
SF3B3-206ENST00000565990 MAP3K4Q9Y6R4 1608 aa19.7■□□□□ 0.74
SF3B3-206ENST00000565990 EHBP1L1Q8N3D4 1523 aa19.7■□□□□ 0.74
SF3B3-206ENST00000565990 CD109Q6YHK3 1445 aa19.66■□□□□ 0.74
SF3B3-206ENST00000565990 SUPT6HQ7KZ85 1726 aaKnown RBP19.65■□□□□ 0.74
SF3B3-206ENST00000565990 TTC37Q6PGP7 1564 aa19.64■□□□□ 0.73
SF3B3-206ENST00000565990 PPRC1Q5VV67 1664 aaKnown RBP19.62■□□□□ 0.73
SF3B3-206ENST00000565990 PLCH2O75038 1416 aa19.62■□□□□ 0.73
SF3B3-206ENST00000565990 TSPOAP1O95153 1857 aa19.62■□□□□ 0.73
SF3B3-206ENST00000565990 NCOA2Q15596 1464 aa19.61■□□□□ 0.73
SF3B3-206ENST00000565990 CDC42BPAQ5VT25 1732 aa19.61■□□□□ 0.73
SF3B3-206ENST00000565990 MYO5CQ9NQX4 1742 aa19.6■□□□□ 0.73
SF3B3-206ENST00000565990 ARAP3Q8WWN8 1544 aa19.6■□□□□ 0.73
SF3B3-206ENST00000565990 GPATCH8Q9UKJ3 1502 aaKnown RBP19.6■□□□□ 0.73
SF3B3-206ENST00000565990 CDC42BPBQ9Y5S2 1711 aa19.59■□□□□ 0.73
SF3B3-206ENST00000565990 CCNB3Q8WWL7 1395 aa19.57■□□□□ 0.72
SF3B3-206ENST00000565990 PHLDB1Q86UU1 1377 aa19.55■□□□□ 0.72
SF3B3-206ENST00000565990 PREX2Q70Z35 1606 aa19.54■□□□□ 0.72
SF3B3-206ENST00000565990 TEX14Q8IWB6 1497 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms