RNA–Protein interactions for RNA: ENST00000565990.2

SF3B3-206, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-206ENST00000565990 NISCHQ9Y2I1 1504 aa30.04■■■□□ 2.4
SF3B3-206ENST00000565990 CCDC180Q9P1Z9 1646 aa26.54■■□□□ 1.84
SF3B3-206ENST00000565990 ABCC9O60706 1549 aa25.56■■□□□ 1.68
SF3B3-206ENST00000565990 ZCCHC6Q5VYS8 1495 aaKnown RBP25.07■■□□□ 1.6
SF3B3-206ENST00000565990 DCAF1Q9Y4B6 1507 aa24.91■■□□□ 1.58
SF3B3-206ENST00000565990 MYO15BQ96JP2 1530 aa24.9■■□□□ 1.58
SF3B3-206ENST00000565990 DCAF8L2P0C7V8 631 aa24.89■■□□□ 1.58
SF3B3-206ENST00000565990 NACADO15069 1562 aa24.88■■□□□ 1.57
SF3B3-206ENST00000565990 RB1CC1Q8TDY2 1594 aa24.79■■□□□ 1.56
SF3B3-206ENST00000565990 UNC13AQ9UPW8 1703 aa24.29■■□□□ 1.48
SF3B3-206ENST00000565990 SCRIBQ14160 1630 aa24.17■■□□□ 1.46
SF3B3-206ENST00000565990 BICRAQ9NZM4 1560 aa24.06■■□□□ 1.44
SF3B3-206ENST00000565990 PABPN1Q86U42 306 aaKnown RBP eCLIP23.97■■□□□ 1.43
SF3B3-206ENST00000565990 SHROOM4Q9ULL8 1493 aa23.82■■□□□ 1.4
SF3B3-206ENST00000565990 EIF4G1Q04637 1599 aaKnown RBP23.36■■□□□ 1.33
SF3B3-206ENST00000565990 CECR2Q9BXF3 1484 aa23.35■■□□□ 1.33
SF3B3-206ENST00000565990 DNAJC5BQ9UF47 199 aa23.24■■□□□ 1.31
SF3B3-206ENST00000565990 BAZ1AQ9NRL2 1556 aaPredicted RBP23.23■■□□□ 1.31
SF3B3-206ENST00000565990 SMARCA4P51532 1647 aa23.2■■□□□ 1.3
SF3B3-206ENST00000565990 CC2D2AQ9P2K1 1620 aa23.18■■□□□ 1.3
SF3B3-206ENST00000565990 MROH2BQ7Z745 1585 aa23.14■■□□□ 1.29
SF3B3-206ENST00000565990 PEG3Q9GZU2 1588 aa23.03■■□□□ 1.28
SF3B3-206ENST00000565990 RSF1Q96T23 1441 aaPredicted RBP23.02■■□□□ 1.28
SF3B3-206ENST00000565990 ATAD2BQ9ULI0 1458 aa23.01■■□□□ 1.27
SF3B3-206ENST00000565990 NCAPD3P42695 1498 aa22.98■■□□□ 1.27
SF3B3-206ENST00000565990 SMARCA2P51531 1590 aa22.97■■□□□ 1.27
SF3B3-206ENST00000565990 WIZO95785 1651 aa22.9■■□□□ 1.26
SF3B3-206ENST00000565990 HMGXB3Q12766 1538 aa22.84■■□□□ 1.25
SF3B3-206ENST00000565990 BAZ1BQ9UIG0 1483 aaKnown RBP22.79■■□□□ 1.24
SF3B3-206ENST00000565990 TOP2AP11388 1531 aaKnown RBP22.67■■□□□ 1.22
SF3B3-206ENST00000565990 SUPT5HO00267 1087 aaKnown RBP22.64■■□□□ 1.21
SF3B3-206ENST00000565990 CCDC88BA6NC98 1476 aa22.44■■□□□ 1.18
SF3B3-206ENST00000565990 CADPSQ9ULU8 1353 aa22.31■■□□□ 1.16
SF3B3-206ENST00000565990 LAMC3Q9Y6N6 1575 aa22.27■■□□□ 1.16
SF3B3-206ENST00000565990 CFTRP13569 1480 aa22.25■■□□□ 1.15
SF3B3-206ENST00000565990 NESP48681 1621 aa22.24■■□□□ 1.15
SF3B3-206ENST00000565990 PRDM2Q13029 1718 aa22.11■■□□□ 1.13
SF3B3-206ENST00000565990 PDS5BQ9NTI5 1447 aa22.1■■□□□ 1.13
SF3B3-206ENST00000565990 FANCD2Q9BXW9 1451 aa22■■□□□ 1.11
SF3B3-206ENST00000565990 KIF21AQ7Z4S6 1674 aa22■■□□□ 1.11
SF3B3-206ENST00000565990 ERCC6Q03468 1493 aa21.96■■□□□ 1.11
SF3B3-206ENST00000565990 CEP164Q9UPV0 1460 aa21.91■■□□□ 1.1
SF3B3-206ENST00000565990 THOC2Q8NI27 1593 aaKnown RBP21.83■■□□□ 1.09
SF3B3-206ENST00000565990 MRC2Q9UBG0 1479 aa21.83■■□□□ 1.08
SF3B3-206ENST00000565990 URB2Q14146 1524 aaKnown RBP21.77■■□□□ 1.08
SF3B3-206ENST00000565990 ABCC8Q09428 1581 aa21.77■■□□□ 1.08
SF3B3-206ENST00000565990 WDR62O43379 1518 aa21.76■■□□□ 1.07
SF3B3-206ENST00000565990 TOPBP1Q92547 1522 aa21.7■■□□□ 1.07
SF3B3-206ENST00000565990 DNMBPQ6XZF7 1577 aa21.7■■□□□ 1.06
SF3B3-206ENST00000565990 CUX1P39880 1505 aa21.67■■□□□ 1.06
SF3B3-206ENST00000565990 CUX2O14529 1486 aa21.67■■□□□ 1.06
SF3B3-206ENST00000565990 WRNQ14191 1432 aaPredicted RBP eCLIP21.65■■□□□ 1.06
SF3B3-206ENST00000565990 BIVM-ERCC5R4GMW8 1640 aa21.6■■□□□ 1.05
SF3B3-206ENST00000565990 TOP2BQ02880 1626 aa21.59■■□□□ 1.05
SF3B3-206ENST00000565990 SYNJ1O43426 1573 aa21.58■■□□□ 1.05
SF3B3-206ENST00000565990 POLA1P09884 1462 aaPredicted RBP21.53■■□□□ 1.04
SF3B3-206ENST00000565990 FGD5Q6ZNL6 1462 aa21.52■■□□□ 1.04
SF3B3-206ENST00000565990 SOGA1O94964 1423 aa21.48■■□□□ 1.03
SF3B3-206ENST00000565990 IFT140Q96RY7 1462 aa21.48■■□□□ 1.03
SF3B3-206ENST00000565990 TARBP1Q13395 1621 aaKnown RBP21.47■■□□□ 1.03
SF3B3-206ENST00000565990 RAD54L2Q9Y4B4 1467 aa21.44■■□□□ 1.02
SF3B3-206ENST00000565990 CHIC1Q5VXU3 224 aa21.42■■□□□ 1.02
SF3B3-206ENST00000565990 TRIM41Q8WV44 630 aa21.42■■□□□ 1.02
SF3B3-206ENST00000565990 ABCA10Q8WWZ4 1543 aa21.37■■□□□ 1.01
SF3B3-206ENST00000565990 WDR97A6NE52 1622 aa21.35■■□□□ 1.01
SF3B3-206ENST00000565990 ZNF608Q9ULD9 1512 aaPredicted RBP21.34■■□□□ 1.01
SF3B3-206ENST00000565990 TDRD9Q8NDG6 1382 aaKnown RBP21.3■■□□□ 1
SF3B3-206ENST00000565990 AQRO60306 1485 aaKnown RBP eCLIP21.28■■□□□ 13e-8■■■■■ 48.3
SF3B3-206ENST00000565990 EIF4G3O43432 1585 aaKnown RBP21.24■□□□□ 0.99
SF3B3-206ENST00000565990 ABCA5Q8WWZ7 1642 aa21.23■□□□□ 0.99
SF3B3-206ENST00000565990 GAPVD1Q14C86 1478 aa21.22■□□□□ 0.99
SF3B3-206ENST00000565990 KIF27Q86VH2 1401 aa21.19■□□□□ 0.98
SF3B3-206ENST00000565990 GRIN2BQ13224 1484 aa21.16■□□□□ 0.98
SF3B3-206ENST00000565990 PBRM1Q86U86 1689 aa21.14■□□□□ 0.97
SF3B3-206ENST00000565990 RUSC2Q8N2Y8 1516 aa21.13■□□□□ 0.97
SF3B3-206ENST00000565990 IGF1RP08069 1367 aa21.12■□□□□ 0.97
SF3B3-206ENST00000565990 ERICH3Q5RHP9 1530 aa21.12■□□□□ 0.97
SF3B3-206ENST00000565990 MAGI1Q96QZ7 1491 aaPredicted RBP21.07■□□□□ 0.96
SF3B3-206ENST00000565990 SNAPC4Q5SXM2 1469 aa21.05■□□□□ 0.96
SF3B3-206ENST00000565990 EEA1Q15075 1411 aa21.04■□□□□ 0.96
SF3B3-206ENST00000565990 CSRNP3Q8WYN3 585 aa21■□□□□ 0.95
SF3B3-206ENST00000565990 FHAD1B1AJZ9 1412 aa21■□□□□ 0.95
SF3B3-206ENST00000565990 SYNJ2O15056 1496 aa20.99■□□□□ 0.95
SF3B3-206ENST00000565990 ADAMTS12P58397 1594 aa20.97■□□□□ 0.95
SF3B3-206ENST00000565990 CUL7Q14999 1698 aa20.97■□□□□ 0.95
SF3B3-206ENST00000565990 CARMIL1Q5VZK9 1371 aa20.97■□□□□ 0.95
SF3B3-206ENST00000565990 CHMP7Q8WUX9 453 aaPredicted RBP20.94■□□□□ 0.94
SF3B3-206ENST00000565990 CHD1O14646 1710 aa20.94■□□□□ 0.94
SF3B3-206ENST00000565990 PRXQ9BXM0 1461 aa20.9■□□□□ 0.94
SF3B3-206ENST00000565990 FBLN2P98095 1184 aa20.9■□□□□ 0.94
SF3B3-206ENST00000565990 FAM9AQ8IZU1 332 aaPredicted RBP20.9■□□□□ 0.94
SF3B3-206ENST00000565990 OSCARQ8IYS5 282 aa20.89■□□□□ 0.93
SF3B3-206ENST00000565990 GRIN2AQ12879 1464 aa20.88■□□□□ 0.93
SF3B3-206ENST00000565990 RAPGEF2Q9Y4G8 1499 aa20.87■□□□□ 0.93
SF3B3-206ENST00000565990 NUP160Q12769 1436 aa20.8■□□□□ 0.92
SF3B3-206ENST00000565990 KIF21BO75037 1637 aa20.78■□□□□ 0.92
SF3B3-206ENST00000565990 CEP170Q5SW79 1584 aa20.76■□□□□ 0.91
SF3B3-206ENST00000565990 CLASP1Q7Z460 1538 aa20.73■□□□□ 0.91
SF3B3-206ENST00000565990 KIAA0586Q9BVV6 1533 aa20.7■□□□□ 0.9
SF3B3-206ENST00000565990 DNAJC5Q9H3Z4 198 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms