RNA–Protein interactions for RNA: ENST00000565832.5

CHD9-217, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 1 (best)

Gene CHD9, Length 2,169 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-217ENST00000565832 TOPBP1Q92547 1522 aa9.91□□□□□ -0.82
CHD9-217ENST00000565832 RAPGEF2Q9Y4G8 1499 aa9.9□□□□□ -0.82
CHD9-217ENST00000565832 CUX2O14529 1486 aa9.89□□□□□ -0.83
CHD9-217ENST00000565832 KIF27Q86VH2 1401 aa9.89□□□□□ -0.83
CHD9-217ENST00000565832 PCGF6Q9BYE7 350 aa9.88□□□□□ -0.83
CHD9-217ENST00000565832 SPINK5Q9NQ38 1064 aaPredicted RBP9.88□□□□□ -0.83
CHD9-217ENST00000565832 POLA1P09884 1462 aaPredicted RBP9.88□□□□□ -0.83
CHD9-217ENST00000565832 DNMBPQ6XZF7 1577 aa9.88□□□□□ -0.83
CHD9-217ENST00000565832 RNF39Q9H2S5 420 aa9.87□□□□□ -0.83
CHD9-217ENST00000565832 TNIKQ9UKE5 1360 aa9.87□□□□□ -0.83
CHD9-217ENST00000565832 IGF1RP08069 1367 aa9.87□□□□□ -0.83
CHD9-217ENST00000565832 GOLGA3Q08378 1498 aa9.87□□□□□ -0.83
CHD9-217ENST00000565832 CEP162Q5TB80 1403 aa9.86□□□□□ -0.83
CHD9-217ENST00000565832 TRHP20396 242 aaPredicted RBP9.85□□□□□ -0.83
CHD9-217ENST00000565832 TDRD9Q8NDG6 1382 aaKnown RBP9.84□□□□□ -0.83
CHD9-217ENST00000565832 PRXQ9BXM0 1461 aa9.84□□□□□ -0.83
CHD9-217ENST00000565832 KIF21BO75037 1637 aa9.83□□□□□ -0.84
CHD9-217ENST00000565832 MKRN4PQ13434 485 aaPredicted RBP9.82□□□□□ -0.84
CHD9-217ENST00000565832 TTBK1Q5TCY1 1321 aaPredicted RBP9.82□□□□□ -0.84
CHD9-217ENST00000565832 CAPN15O75808 1086 aa9.8□□□□□ -0.84
CHD9-217ENST00000565832 CARMIL1Q5VZK9 1371 aa9.8□□□□□ -0.84
CHD9-217ENST00000565832 ERCC6Q03468 1493 aa9.79□□□□□ -0.84
CHD9-217ENST00000565832 ABCA10Q8WWZ4 1543 aa9.79□□□□□ -0.84
CHD9-217ENST00000565832 POLA2Q14181 598 aa9.78□□□□□ -0.84
CHD9-217ENST00000565832 MRC2Q9UBG0 1479 aa9.78□□□□□ -0.84
CHD9-217ENST00000565832 SPDYE4A6NLX3 237 aa9.77□□□□□ -0.85
CHD9-217ENST00000565832 CLIP1P30622 1438 aa9.77□□□□□ -0.85
CHD9-217ENST00000565832 AQRO60306 1485 aaKnown RBP eCLIP9.76□□□□□ -0.85
CHD9-217ENST00000565832 C1QBPQ07021 282 aaKnown RBP9.75□□□□□ -0.85
CHD9-217ENST00000565832 TRIM26Q12899 539 aaPredicted RBP9.75□□□□□ -0.85
CHD9-217ENST00000565832 ERICH3Q5RHP9 1530 aa9.75□□□□□ -0.85
CHD9-217ENST00000565832 TARBP1Q13395 1621 aaKnown RBP9.74□□□□□ -0.85
CHD9-217ENST00000565832 FBLN2P98095 1184 aa9.74□□□□□ -0.85
CHD9-217ENST00000565832 GAPVD1Q14C86 1478 aa9.73□□□□□ -0.85
CHD9-217ENST00000565832 ZNF608Q9ULD9 1512 aaPredicted RBP9.73□□□□□ -0.85
CHD9-217ENST00000565832 WDR97A6NE52 1622 aa9.72□□□□□ -0.85
CHD9-217ENST00000565832 P3H3Q8IVL6 736 aa9.72□□□□□ -0.85
CHD9-217ENST00000565832 WDR62O43379 1518 aa9.71□□□□□ -0.86
CHD9-217ENST00000565832 ABCA5Q8WWZ7 1642 aa9.7□□□□□ -0.86
CHD9-217ENST00000565832 THOC2Q8NI27 1593 aaKnown RBP9.68□□□□□ -0.86
CHD9-217ENST00000565832 ARAP1Q96P48 1450 aa9.68□□□□□ -0.86
CHD9-217ENST00000565832 ABCB7O75027 752 aa9.67□□□□□ -0.86
CHD9-217ENST00000565832 IFT140Q96RY7 1462 aa9.66□□□□□ -0.86
CHD9-217ENST00000565832 ARHGAP35Q9NRY4 1499 aa9.66□□□□□ -0.86
CHD9-217ENST00000565832 VPS8Q8N3P4 1428 aa9.66□□□□□ -0.86
CHD9-217ENST00000565832 PROM2Q8N271 834 aa9.65□□□□□ -0.86
CHD9-217ENST00000565832 FBXO3Q9UK99 471 aa9.65□□□□□ -0.86
CHD9-217ENST00000565832 SLC24A1O60721 1099 aa9.64□□□□□ -0.87
CHD9-217ENST00000565832 CUL7Q14999 1698 aa9.63□□□□□ -0.87
CHD9-217ENST00000565832 KANK4Q5T7N3 995 aaPredicted RBP9.63□□□□□ -0.87
CHD9-217ENST00000565832 PBRM1Q86U86 1689 aa9.62□□□□□ -0.87
CHD9-217ENST00000565832 GRIN2BQ13224 1484 aa9.62□□□□□ -0.87
CHD9-217ENST00000565832 ATP1B4Q9UN42 357 aaPredicted RBP9.61□□□□□ -0.87
CHD9-217ENST00000565832 EIF4G3O43432 1585 aaKnown RBP9.6□□□□□ -0.87
CHD9-217ENST00000565832 FHAD1B1AJZ9 1412 aa9.6□□□□□ -0.87
CHD9-217ENST00000565832 SNAPC4Q5SXM2 1469 aa9.59□□□□□ -0.87
CHD9-217ENST00000565832 FHOD3Q2V2M9 1422 aa9.59□□□□□ -0.87
CHD9-217ENST00000565832 ZBTB12Q9Y330 459 aaPredicted RBP9.58□□□□□ -0.88
CHD9-217ENST00000565832 CHMP7Q8WUX9 453 aaPredicted RBP9.58□□□□□ -0.88
CHD9-217ENST00000565832 CTTNBP2Q8WZ74 1663 aa9.56□□□□□ -0.88
CHD9-217ENST00000565832 ADAMTS12P58397 1594 aa9.56□□□□□ -0.88
CHD9-217ENST00000565832 VASPP50552 380 aaPredicted RBP9.55□□□□□ -0.88
CHD9-217ENST00000565832 HRCP23327 699 aa9.54□□□□□ -0.88
CHD9-217ENST00000565832 DSG3P32926 999 aa9.54□□□□□ -0.88
CHD9-217ENST00000565832 GRIN2AQ12879 1464 aa9.52□□□□□ -0.89
CHD9-217ENST00000565832 ARID3CA6NKF2 412 aa9.51□□□□□ -0.89
CHD9-217ENST00000565832 SYNJ2O15056 1496 aa9.5□□□□□ -0.89
CHD9-217ENST00000565832 MAGI1Q96QZ7 1491 aaPredicted RBP9.5□□□□□ -0.89
CHD9-217ENST00000565832 IQGAP2Q13576 1575 aa9.49□□□□□ -0.89
CHD9-217ENST00000565832 PCF11O94913 1555 aaKnown RBP9.48□□□□□ -0.89
CHD9-217ENST00000565832 EFCAB5A4FU69 1503 aa9.48□□□□□ -0.89
CHD9-217ENST00000565832 SAMD9Q5K651 1589 aa9.48□□□□□ -0.89
CHD9-217ENST00000565832 KIAA0586Q9BVV6 1533 aa9.47□□□□□ -0.89
CHD9-217ENST00000565832 IFNLR1Q8IU57 520 aaPredicted RBP9.47□□□□□ -0.89
CHD9-217ENST00000565832 JPH4Q96JJ6 628 aa9.47□□□□□ -0.89
CHD9-217ENST00000565832 CEP170Q5SW79 1584 aa9.47□□□□□ -0.89
CHD9-217ENST00000565832 FMN1Q68DA7 1419 aa9.45□□□□□ -0.9
CHD9-217ENST00000565832 CASKIN1Q8WXD9 1431 aa9.45□□□□□ -0.9
CHD9-217ENST00000565832 OSCARQ8IYS5 282 aa9.45□□□□□ -0.9
CHD9-217ENST00000565832 DISP1Q96F81 1524 aa9.44□□□□□ -0.9
CHD9-217ENST00000565832 ITGAEP38570 1179 aa9.44□□□□□ -0.9
CHD9-217ENST00000565832 TIAM1Q13009 1591 aa9.44□□□□□ -0.9
CHD9-217ENST00000565832 ZNF692Q9BU19 519 aaPredicted RBP9.44□□□□□ -0.9
CHD9-217ENST00000565832 LRRC9Q6ZRR7 1453 aa9.44□□□□□ -0.9
CHD9-217ENST00000565832 LRRIQ1Q96JM4 1722 aa9.43□□□□□ -0.9
CHD9-217ENST00000565832 NUP160Q12769 1436 aa9.43□□□□□ -0.9
CHD9-217ENST00000565832 UGGT2Q9NYU1 1516 aa9.42□□□□□ -0.9
CHD9-217ENST00000565832 FYCO1Q9BQS8 1478 aa9.42□□□□□ -0.9
CHD9-217ENST00000565832 PHLDB1Q86UU1 1377 aa9.41□□□□□ -0.9
CHD9-217ENST00000565832 CCER1Q8TC90 406 aaPredicted RBP9.41□□□□□ -0.9
CHD9-217ENST00000565832 CHD1O14646 1710 aa9.4□□□□□ -0.9
CHD9-217ENST00000565832 MAP3K1Q13233 1512 aa9.4□□□□□ -0.91
CHD9-217ENST00000565832 KIAA0556O60303 1618 aa9.39□□□□□ -0.91
CHD9-217ENST00000565832 SPDYE2BA6NHP3 402 aa9.39□□□□□ -0.91
CHD9-217ENST00000565832 SPDYE6P0CI01 402 aa9.39□□□□□ -0.91
CHD9-217ENST00000565832 FAM50AQ14320 339 aaKnown RBP9.39□□□□□ -0.91
CHD9-217ENST00000565832 SPDYE2Q495Y8 402 aa9.39□□□□□ -0.91
CHD9-217ENST00000565832 MTUS2Q5JR59 1369 aa9.38□□□□□ -0.91
CHD9-217ENST00000565832 CCNB3Q8WWL7 1395 aa9.37□□□□□ -0.91
CHD9-217ENST00000565832 CDK13Q14004 1512 aaKnown RBP9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms