RNA–Protein interactions for RNA: ENST00000565832.5

CHD9-217, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 1 (best)

Gene CHD9, Length 2,169 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-217ENST00000565832 AEBP2Q6ZN18 517 aaPredicted RBP16.2■□□□□ 0.18
CHD9-217ENST00000565832 CHIC1Q5VXU3 224 aa16.15■□□□□ 0.18
CHD9-217ENST00000565832 PHF23Q9BUL5 403 aaPredicted RBP14.29□□□□□ -0.12
CHD9-217ENST00000565832 NISCHQ9Y2I1 1504 aa13.87□□□□□ -0.19
CHD9-217ENST00000565832 SENP3Q9H4L4 574 aaPredicted RBP13.61□□□□□ -0.23
CHD9-217ENST00000565832 PLPPR3Q6T4P5 718 aa13.28□□□□□ -0.28
CHD9-217ENST00000565832 FOXD1Q16676 465 aa12.63□□□□□ -0.39
CHD9-217ENST00000565832 ADRA2BP18089 450 aa12.5□□□□□ -0.41
CHD9-217ENST00000565832 PPP6R1Q9UPN7 881 aa12.49□□□□□ -0.41
CHD9-217ENST00000565832 PIAS4Q8N2W9 510 aaPredicted RBP12□□□□□ -0.49
CHD9-217ENST00000565832 KCNA4P22459 653 aa11.98□□□□□ -0.49
CHD9-217ENST00000565832 CCDC180Q9P1Z9 1646 aa11.94□□□□□ -0.5
CHD9-217ENST00000565832 PPP4R3CPQ6ZMV5 832 aa11.77□□□□□ -0.53
CHD9-217ENST00000565832 DCAF8L2P0C7V8 631 aa11.71□□□□□ -0.54
CHD9-217ENST00000565832 EHMT2Q96KQ7 1210 aa11.64□□□□□ -0.55
CHD9-217ENST00000565832 ZCCHC6Q5VYS8 1495 aaKnown RBP11.62□□□□□ -0.55
CHD9-217ENST00000565832 SHROOM4Q9ULL8 1493 aa11.57□□□□□ -0.56
CHD9-217ENST00000565832 NCBP3Q53F19 620 aaKnown RBP11.53□□□□□ -0.56
CHD9-217ENST00000565832 ABCC9O60706 1549 aa11.49□□□□□ -0.57
CHD9-217ENST00000565832 SLC4A1APQ9BWU0 796 aaKnown RBP11.45□□□□□ -0.58
CHD9-217ENST00000565832 MSH5O43196 834 aa11.44□□□□□ -0.58
CHD9-217ENST00000565832 NPM3O75607 178 aaKnown RBP11.42□□□□□ -0.58
CHD9-217ENST00000565832 SCAF1Q9H7N4 1312 aaKnown RBP11.35□□□□□ -0.59
CHD9-217ENST00000565832 DCAF1Q9Y4B6 1507 aa11.35□□□□□ -0.59
CHD9-217ENST00000565832 CNKSR2Q8WXI2 1034 aa11.33□□□□□ -0.6
CHD9-217ENST00000565832 CSRNP3Q8WYN3 585 aa11.3□□□□□ -0.6
CHD9-217ENST00000565832 MAPK8IP2Q13387 824 aaPredicted RBP11.23□□□□□ -0.61
CHD9-217ENST00000565832 POTEDQ86YR6 584 aa11.18□□□□□ -0.62
CHD9-217ENST00000565832 MYO15BQ96JP2 1530 aa11.17□□□□□ -0.62
CHD9-217ENST00000565832 SCRIBQ14160 1630 aa11.16□□□□□ -0.62
CHD9-217ENST00000565832 SUPT5HO00267 1087 aaKnown RBP11.16□□□□□ -0.62
CHD9-217ENST00000565832 NACADO15069 1562 aa11.16□□□□□ -0.62
CHD9-217ENST00000565832 RB1CC1Q8TDY2 1594 aa11.07□□□□□ -0.64
CHD9-217ENST00000565832 ZBTB22O15209 634 aa11.06□□□□□ -0.64
CHD9-217ENST00000565832 RNF216Q9NWF9 866 aaPredicted RBP11.01□□□□□ -0.65
CHD9-217ENST00000565832 DNAJC5BQ9UF47 199 aa10.96□□□□□ -0.65
CHD9-217ENST00000565832 PABPN1Q86U42 306 aaKnown RBP eCLIP10.95□□□□□ -0.66
CHD9-217ENST00000565832 DMRT2Q9Y5R5 561 aa10.94□□□□□ -0.66
CHD9-217ENST00000565832 UNC13AQ9UPW8 1703 aa10.92□□□□□ -0.66
CHD9-217ENST00000565832 CECR2Q9BXF3 1484 aa10.88□□□□□ -0.67
CHD9-217ENST00000565832 FOXD4L1Q9NU39 408 aa10.87□□□□□ -0.67
CHD9-217ENST00000565832 HOXD11P31277 338 aaPredicted RBP10.87□□□□□ -0.67
CHD9-217ENST00000565832 RSF1Q96T23 1441 aaPredicted RBP10.83□□□□□ -0.68
CHD9-217ENST00000565832 BICRAQ9NZM4 1560 aa10.82□□□□□ -0.68
CHD9-217ENST00000565832 MROH2BQ7Z745 1585 aa10.78□□□□□ -0.68
CHD9-217ENST00000565832 WIZO95785 1651 aa10.7□□□□□ -0.7
CHD9-217ENST00000565832 SLC4A2P04920 1241 aa10.7□□□□□ -0.7
CHD9-217ENST00000565832 BAZ1AQ9NRL2 1556 aaPredicted RBP10.66□□□□□ -0.7
CHD9-217ENST00000565832 SMARCA4P51532 1647 aa10.63□□□□□ -0.71
CHD9-217ENST00000565832 MYCNP04198 464 aaPredicted RBP10.51□□□□□ -0.73
CHD9-217ENST00000565832 ATAD2BQ9ULI0 1458 aa10.48□□□□□ -0.73
CHD9-217ENST00000565832 DCAF8L1A6NGE4 600 aa10.48□□□□□ -0.73
CHD9-217ENST00000565832 CCDC88BA6NC98 1476 aa10.48□□□□□ -0.73
CHD9-217ENST00000565832 TOP2AP11388 1531 aaKnown RBP10.48□□□□□ -0.73
CHD9-217ENST00000565832 EIF4G1Q04637 1599 aaKnown RBP10.47□□□□□ -0.73
CHD9-217ENST00000565832 PEG3Q9GZU2 1588 aa10.44□□□□□ -0.74
CHD9-217ENST00000565832 SMARCA2P51531 1590 aa10.43□□□□□ -0.74
CHD9-217ENST00000565832 ATXN8OSP0DMR3 200 aa10.42□□□□□ -0.74
CHD9-217ENST00000565832 BAZ1BQ9UIG0 1483 aaKnown RBP10.42□□□□□ -0.74
CHD9-217ENST00000565832 TRIM41Q8WV44 630 aa10.41□□□□□ -0.74
CHD9-217ENST00000565832 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.37□□□□□ -0.75
CHD9-217ENST00000565832 NCAPD3P42695 1498 aa10.35□□□□□ -0.75
CHD9-217ENST00000565832 LOC105371045A0A1W2PR82 267 aa10.35□□□□□ -0.75
CHD9-217ENST00000565832 FAM9AQ8IZU1 332 aaPredicted RBP10.33□□□□□ -0.76
CHD9-217ENST00000565832 CC2D2AQ9P2K1 1620 aa10.33□□□□□ -0.76
CHD9-217ENST00000565832 ABCC8Q09428 1581 aa10.31□□□□□ -0.76
CHD9-217ENST00000565832 HMGXB3Q12766 1538 aa10.28□□□□□ -0.76
CHD9-217ENST00000565832 ATF5Q9Y2D1 282 aaPredicted RBP10.27□□□□□ -0.77
CHD9-217ENST00000565832 U3KPZ7 1027 aaPredicted RBP10.26□□□□□ -0.77
CHD9-217ENST00000565832 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.21□□□□□ -0.78
CHD9-217ENST00000565832 HNRNPUL2Q1KMD3 747 aaKnown RBP10.21□□□□□ -0.78
CHD9-217ENST00000565832 SAMD1Q6SPF0 538 aaPredicted RBP10.21□□□□□ -0.78
CHD9-217ENST00000565832 FKBP8Q14318 412 aa10.18□□□□□ -0.78
CHD9-217ENST00000565832 WRNQ14191 1432 aaPredicted RBP eCLIP10.17□□□□□ -0.787e-6■■■■■ 31.3
CHD9-217ENST00000565832 CFTRP13569 1480 aa10.15□□□□□ -0.78
CHD9-217ENST00000565832 SOGA1O94964 1423 aa10.15□□□□□ -0.78
CHD9-217ENST00000565832 CADPSQ9ULU8 1353 aa10.14□□□□□ -0.79
CHD9-217ENST00000565832 SYNJ1O43426 1573 aa10.14□□□□□ -0.79
CHD9-217ENST00000565832 RUSC2Q8N2Y8 1516 aa10.14□□□□□ -0.79
CHD9-217ENST00000565832 NESP48681 1621 aa10.12□□□□□ -0.79
CHD9-217ENST00000565832 CUX1P39880 1505 aa10.05□□□□□ -0.8
CHD9-217ENST00000565832 TOP2BQ02880 1626 aa10.03□□□□□ -0.8
CHD9-217ENST00000565832 FANCD2Q9BXW9 1451 aa10.02□□□□□ -0.8
CHD9-217ENST00000565832 ZNF219Q9P2Y4 722 aaPredicted RBP10.02□□□□□ -0.81
CHD9-217ENST00000565832 PRDM2Q13029 1718 aa10□□□□□ -0.81
CHD9-217ENST00000565832 RTN4Q9NQC3 1192 aaKnown RBP9.99□□□□□ -0.81
CHD9-217ENST00000565832 BIVM-ERCC5R4GMW8 1640 aa9.99□□□□□ -0.81
CHD9-217ENST00000565832 UBTFP17480 764 aaKnown RBP9.98□□□□□ -0.81
CHD9-217ENST00000565832 APLP2Q06481 763 aa9.98□□□□□ -0.81
CHD9-217ENST00000565832 LAMC3Q9Y6N6 1575 aa9.95□□□□□ -0.82
CHD9-217ENST00000565832 RANGAP1P46060 587 aaPredicted RBP9.94□□□□□ -0.82
CHD9-217ENST00000565832 AMER1Q5JTC6 1135 aaPredicted RBP9.94□□□□□ -0.82
CHD9-217ENST00000565832 EEA1Q15075 1411 aa9.93□□□□□ -0.82
CHD9-217ENST00000565832 FGD5Q6ZNL6 1462 aa9.93□□□□□ -0.82
CHD9-217ENST00000565832 PDS5BQ9NTI5 1447 aa9.92□□□□□ -0.82
CHD9-217ENST00000565832 PPARGC1BQ86YN6 1023 aaKnown RBP9.92□□□□□ -0.82
CHD9-217ENST00000565832 CEP164Q9UPV0 1460 aa9.92□□□□□ -0.82
CHD9-217ENST00000565832 RAD54L2Q9Y4B4 1467 aa9.92□□□□□ -0.82
CHD9-217ENST00000565832 KIF21AQ7Z4S6 1674 aa9.91□□□□□ -0.82
CHD9-217ENST00000565832 URB2Q14146 1524 aaKnown RBP9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 158.1 ms