RNA–Protein interactions for RNA: ENST00000560447.1

RTF1-206, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-206ENST00000560447 DSG3P32926 999 aa14.93□□□□□ -0.02
RTF1-206ENST00000560447 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.91□□□□□ -0.02
RTF1-206ENST00000560447 HNRNPUL2Q1KMD3 747 aaKnown RBP14.91□□□□□ -0.02
RTF1-206ENST00000560447 CUX2O14529 1486 aa14.9□□□□□ -0.02
RTF1-206ENST00000560447 ABCA10Q8WWZ4 1543 aa14.88□□□□□ -0.03
RTF1-206ENST00000560447 TOPBP1Q92547 1522 aa14.87□□□□□ -0.03
RTF1-206ENST00000560447 CUL7Q14999 1698 aa14.87□□□□□ -0.03
RTF1-206ENST00000560447 APLP2Q06481 763 aa14.86□□□□□ -0.03
RTF1-206ENST00000560447 WDR97A6NE52 1622 aa14.85□□□□□ -0.03
RTF1-206ENST00000560447 ARAP1Q96P48 1450 aa14.85□□□□□ -0.03
RTF1-206ENST00000560447 IGF1RP08069 1367 aa14.85□□□□□ -0.03
RTF1-206ENST00000560447 SAMD1Q6SPF0 538 aaPredicted RBP14.84□□□□□ -0.03
RTF1-206ENST00000560447 MYCNP04198 464 aaPredicted RBP14.83□□□□□ -0.04
RTF1-206ENST00000560447 PDS5BQ9NTI5 1447 aa14.83□□□□□ -0.04
RTF1-206ENST00000560447 POLA1P09884 1462 aaPredicted RBP14.82□□□□□ -0.04
RTF1-206ENST00000560447 CARMIL1Q5VZK9 1371 aa14.8□□□□□ -0.04
RTF1-206ENST00000560447 MAP3K1Q13233 1512 aa14.8□□□□□ -0.04
RTF1-206ENST00000560447 PPARGC1BQ86YN6 1023 aaKnown RBP14.79□□□□□ -0.04
RTF1-206ENST00000560447 ZNF219Q9P2Y4 722 aaPredicted RBP14.78□□□□□ -0.04
RTF1-206ENST00000560447 ARHGAP35Q9NRY4 1499 aa14.77□□□□□ -0.04
RTF1-206ENST00000560447 FOXD4L1Q9NU39 408 aa14.77□□□□□ -0.05
RTF1-206ENST00000560447 NESP48681 1621 aa14.77□□□□□ -0.05
RTF1-206ENST00000560447 CTTNBP2Q8WZ74 1663 aa14.75□□□□□ -0.05
RTF1-206ENST00000560447 TRHP20396 242 aaPredicted RBP14.75□□□□□ -0.05
RTF1-206ENST00000560447 EFCAB5A4FU69 1503 aa14.75□□□□□ -0.05
RTF1-206ENST00000560447 URB2Q14146 1524 aaKnown RBP14.75□□□□□ -0.05
RTF1-206ENST00000560447 ABCA5Q8WWZ7 1642 aa14.74□□□□□ -0.05
RTF1-206ENST00000560447 KIF21AQ7Z4S6 1674 aa14.73□□□□□ -0.05
RTF1-206ENST00000560447 FHAD1B1AJZ9 1412 aa14.69□□□□□ -0.06
RTF1-206ENST00000560447 CCER1Q8TC90 406 aaPredicted RBP14.69□□□□□ -0.06
RTF1-206ENST00000560447 RAD54L2Q9Y4B4 1467 aa14.69□□□□□ -0.06
RTF1-206ENST00000560447 CFAP43Q8NDM7 1665 aa14.67□□□□□ -0.06
RTF1-206ENST00000560447 TIAM1Q13009 1591 aa14.66□□□□□ -0.06
RTF1-206ENST00000560447 RRBP1Q9P2E9 1410 aaKnown RBP14.66□□□□□ -0.06
RTF1-206ENST00000560447 AQRO60306 1485 aaKnown RBP eCLIP14.65□□□□□ -0.064e-7■■■■□ 23.9
RTF1-206ENST00000560447 ZBTB22O15209 634 aa14.65□□□□□ -0.06
RTF1-206ENST00000560447 TARBP1Q13395 1621 aaKnown RBP14.65□□□□□ -0.06
RTF1-206ENST00000560447 ABCB7O75027 752 aa14.64□□□□□ -0.07
RTF1-206ENST00000560447 GAPVD1Q14C86 1478 aa14.62□□□□□ -0.07
RTF1-206ENST00000560447 FYCO1Q9BQS8 1478 aa14.6□□□□□ -0.07
RTF1-206ENST00000560447 MRC2Q9UBG0 1479 aa14.6□□□□□ -0.07
RTF1-206ENST00000560447 PBRM1Q86U86 1689 aa14.59□□□□□ -0.07
RTF1-206ENST00000560447 CLSPNQ9HAW4 1339 aa14.59□□□□□ -0.07
RTF1-206ENST00000560447 SAMD9Q5K651 1589 aa14.59□□□□□ -0.07
RTF1-206ENST00000560447 TTBK1Q5TCY1 1321 aaPredicted RBP14.57□□□□□ -0.08
RTF1-206ENST00000560447 PCF11O94913 1555 aaKnown RBP14.56□□□□□ -0.08
RTF1-206ENST00000560447 THOC2Q8NI27 1593 aaKnown RBP14.56□□□□□ -0.08
RTF1-206ENST00000560447 FMN1Q68DA7 1419 aa14.55□□□□□ -0.08
RTF1-206ENST00000560447 CASKIN1Q8WXD9 1431 aa14.55□□□□□ -0.08
RTF1-206ENST00000560447 LRRC9Q6ZRR7 1453 aa14.55□□□□□ -0.08
RTF1-206ENST00000560447 RANGAP1P46060 587 aaPredicted RBP14.54□□□□□ -0.08
RTF1-206ENST00000560447 WDR62O43379 1518 aa14.54□□□□□ -0.08
RTF1-206ENST00000560447 CCNB3Q8WWL7 1395 aa14.52□□□□□ -0.08
RTF1-206ENST00000560447 ADAMTS12P58397 1594 aa14.51□□□□□ -0.09
RTF1-206ENST00000560447 IFT140Q96RY7 1462 aa14.51□□□□□ -0.09
RTF1-206ENST00000560447 ATF5Q9Y2D1 282 aaPredicted RBP14.51□□□□□ -0.09
RTF1-206ENST00000560447 KANK4Q5T7N3 995 aaPredicted RBP14.5□□□□□ -0.09
RTF1-206ENST00000560447 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.49□□□□□ -0.09
RTF1-206ENST00000560447 TDRD9Q8NDG6 1382 aaKnown RBP14.48□□□□□ -0.09
RTF1-206ENST00000560447 GRIN2BQ13224 1484 aa14.48□□□□□ -0.09
RTF1-206ENST00000560447 SNAPC4Q5SXM2 1469 aa14.46□□□□□ -0.09
RTF1-206ENST00000560447 FHOD3Q2V2M9 1422 aa14.45□□□□□ -0.1
RTF1-206ENST00000560447 IQGAP2Q13576 1575 aa14.43□□□□□ -0.1
RTF1-206ENST00000560447 POLA2Q14181 598 aa14.43□□□□□ -0.1
RTF1-206ENST00000560447 CCDC18Q5T9S5 1454 aa14.4□□□□□ -0.1
RTF1-206ENST00000560447 DHX57Q6P158 1386 aaKnown RBP14.39□□□□□ -0.11
RTF1-206ENST00000560447 EHBP1L1Q8N3D4 1523 aa14.39□□□□□ -0.11
RTF1-206ENST00000560447 UGGT2Q9NYU1 1516 aa14.39□□□□□ -0.11
RTF1-206ENST00000560447 HECW1Q76N89 1606 aa14.38□□□□□ -0.11
RTF1-206ENST00000560447 SUPT6HQ7KZ85 1726 aaKnown RBP14.38□□□□□ -0.11
RTF1-206ENST00000560447 LRRIQ1Q96JM4 1722 aa14.38□□□□□ -0.11
RTF1-206ENST00000560447 PHLDB1Q86UU1 1377 aa14.35□□□□□ -0.11
RTF1-206ENST00000560447 EIF4G3O43432 1585 aaKnown RBP14.35□□□□□ -0.11
RTF1-206ENST00000560447 MAGI1Q96QZ7 1491 aaPredicted RBP14.35□□□□□ -0.11
RTF1-206ENST00000560447 KIAA0586Q9BVV6 1533 aa14.33□□□□□ -0.12
RTF1-206ENST00000560447 ZNF316A6NFI3 1004 aaPredicted RBP14.33□□□□□ -0.12
RTF1-206ENST00000560447 ATXN8OSP0DMR3 200 aa14.33□□□□□ -0.12
RTF1-206ENST00000560447 SETD5Q9C0A6 1442 aa14.32□□□□□ -0.12
RTF1-206ENST00000560447 ERCC6Q03468 1493 aa14.31□□□□□ -0.12
RTF1-206ENST00000560447 ARHGEF11O15085 1522 aa14.31□□□□□ -0.12
RTF1-206ENST00000560447 MTUS2Q5JR59 1369 aa14.3□□□□□ -0.12
RTF1-206ENST00000560447 FGD6Q6ZV73 1430 aa14.3□□□□□ -0.12
RTF1-206ENST00000560447 P3H3Q8IVL6 736 aa14.29□□□□□ -0.12
RTF1-206ENST00000560447 GRIN2AQ12879 1464 aa14.29□□□□□ -0.12
RTF1-206ENST00000560447 KIAA0556O60303 1618 aa14.28□□□□□ -0.12
RTF1-206ENST00000560447 ZNF608Q9ULD9 1512 aaPredicted RBP14.28□□□□□ -0.12
RTF1-206ENST00000560447 MYOM3Q5VTT5 1437 aa14.27□□□□□ -0.12
RTF1-206ENST00000560447 RAB3GAP2Q9H2M9 1393 aa14.27□□□□□ -0.12
RTF1-206ENST00000560447 DIEXFQ68CQ4 756 aaKnown RBP14.27□□□□□ -0.13
RTF1-206ENST00000560447 NCOA2Q15596 1464 aa14.26□□□□□ -0.13
RTF1-206ENST00000560447 SYNJ2O15056 1496 aa14.25□□□□□ -0.13
RTF1-206ENST00000560447 TCOF1Q13428 1488 aaKnown RBP14.25□□□□□ -0.13
RTF1-206ENST00000560447 EPRSP07814 1512 aaKnown RBP14.24□□□□□ -0.13
RTF1-206ENST00000560447 PTPN23Q9H3S7 1636 aa14.23□□□□□ -0.13
RTF1-206ENST00000560447 TIMELESSQ9UNS1 1208 aa14.22□□□□□ -0.13
RTF1-206ENST00000560447 MAPKBP1O60336 1514 aa14.21□□□□□ -0.13
RTF1-206ENST00000560447 DISP1Q96F81 1524 aa14.21□□□□□ -0.13
RTF1-206ENST00000560447 ACIN1Q9UKV3 1341 aaKnown RBP14.21□□□□□ -0.13
RTF1-206ENST00000560447 ATP1B4Q9UN42 357 aaPredicted RBP14.21□□□□□ -0.13
RTF1-206ENST00000560447 RAPGEF6Q8TEU7 1601 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms