RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 SHROOM2Q13796 1616 aa36.06■■■■□ 3.36
SNX1-210ENST00000560260 CTTNBP2Q8WZ74 1663 aa36.02■■■■□ 3.36
SNX1-210ENST00000560260 ARHGEF11O15085 1522 aa36■■■■□ 3.35
SNX1-210ENST00000560260 RIMBP3CA6NJZ7 1639 aa35.98■■■■□ 3.35
SNX1-210ENST00000560260 RIMBP3BA6NNM3 1639 aa35.98■■■■□ 3.35
SNX1-210ENST00000560260 RIMBP3Q9UFD9 1639 aa35.98■■■■□ 3.35
SNX1-210ENST00000560260 IQGAP2Q13576 1575 aa35.98■■■■□ 3.35
SNX1-210ENST00000560260 ERCC6L2Q5T890 1561 aa35.94■■■■□ 3.34
SNX1-210ENST00000560260 GOLGA3Q08378 1498 aa35.93■■■■□ 3.34
SNX1-210ENST00000560260 JPH4Q96JJ6 628 aa35.89■■■■□ 3.34
SNX1-210ENST00000560260 EHMT2Q96KQ7 1210 aa35.87■■■■□ 3.33
SNX1-210ENST00000560260 PRG4Q92954 1404 aaPredicted RBP35.85■■■■□ 3.33
SNX1-210ENST00000560260 UGGT2Q9NYU1 1516 aa35.81■■■■□ 3.32
SNX1-210ENST00000560260 ARAP1Q96P48 1450 aa35.78■■■■□ 3.32
SNX1-210ENST00000560260 DISP1Q96F81 1524 aa35.74■■■■□ 3.31
SNX1-210ENST00000560260 UBTFP17480 764 aaKnown RBP35.69■■■■□ 3.3
SNX1-210ENST00000560260 KIAA0556O60303 1618 aa35.67■■■■□ 3.3
SNX1-210ENST00000560260 CARMIL2Q6F5E8 1435 aa35.61■■■■□ 3.29
SNX1-210ENST00000560260 SAMD9Q5K651 1589 aa35.6■■■■□ 3.29
SNX1-210ENST00000560260 CYB5RLQ6IPT4 315 aa35.55■■■■□ 3.28
SNX1-210ENST00000560260 TNIKQ9UKE5 1360 aa35.53■■■■□ 3.28
SNX1-210ENST00000560260 RANGAP1P46060 587 aaPredicted RBP35.52■■■■□ 3.28
SNX1-210ENST00000560260 LOC105371045A0A1W2PR82 267 aa35.51■■■■□ 3.27
SNX1-210ENST00000560260 EFCAB5A4FU69 1503 aa35.46■■■■□ 3.27
SNX1-210ENST00000560260 PTPRGP23470 1445 aa35.44■■■■□ 3.26
SNX1-210ENST00000560260 P3H3Q8IVL6 736 aa35.42■■■■□ 3.26
SNX1-210ENST00000560260 ARHGAP35Q9NRY4 1499 aa35.41■■■■□ 3.26
SNX1-210ENST00000560260 TTBK1Q5TCY1 1321 aaPredicted RBP35.4■■■■□ 3.26
SNX1-210ENST00000560260 FHOD3Q2V2M9 1422 aa35.39■■■■□ 3.26
SNX1-210ENST00000560260 ADCY10Q96PN6 1610 aa35.32■■■■□ 3.24
SNX1-210ENST00000560260 CLIP1P30622 1438 aa35.28■■■■□ 3.24
SNX1-210ENST00000560260 CEP162Q5TB80 1403 aa35.27■■■■□ 3.24
SNX1-210ENST00000560260 PLB1Q6P1J6 1458 aa35.26■■■■□ 3.24
SNX1-210ENST00000560260 ABCA8O94911 1581 aa35.26■■■■□ 3.23
SNX1-210ENST00000560260 UACAQ9BZF9 1416 aa35.25■■■■□ 3.23
SNX1-210ENST00000560260 ABCC2Q92887 1545 aa35.22■■■■□ 3.23
SNX1-210ENST00000560260 UHRF1BP1LA0JNW5 1464 aa35.21■■■■□ 3.23
SNX1-210ENST00000560260 RAPGEF6Q8TEU7 1601 aa35.13■■■■□ 3.21
SNX1-210ENST00000560260 FMN1Q68DA7 1419 aa35.07■■■■□ 3.2
SNX1-210ENST00000560260 KDM5BQ9UGL1 1544 aa35.05■■■■□ 3.2
SNX1-210ENST00000560260 NUP153P49790 1475 aaKnown RBP35.03■■■■□ 3.2
SNX1-210ENST00000560260 ZCCHC11Q5TAX3 1644 aaKnown RBP35.02■■■■□ 3.2
SNX1-210ENST00000560260 PCF11O94913 1555 aaKnown RBP34.99■■■■□ 3.19
SNX1-210ENST00000560260 MAPKBP1O60336 1514 aa34.96■■■■□ 3.19
SNX1-210ENST00000560260 ATP10BO94823 1461 aa34.93■■■■□ 3.18
SNX1-210ENST00000560260 ARID3CA6NKF2 412 aa34.92■■■■□ 3.18
SNX1-210ENST00000560260 NPM1P06748 294 aaKnown RBP eCLIP34.92■■■■□ 3.18
SNX1-210ENST00000560260 HECW1Q76N89 1606 aa34.92■■■■□ 3.18
SNX1-210ENST00000560260 CASKIN1Q8WXD9 1431 aa34.9■■■■□ 3.18
SNX1-210ENST00000560260 LRRIQ1Q96JM4 1722 aa34.89■■■■□ 3.18
SNX1-210ENST00000560260 FYCO1Q9BQS8 1478 aa34.85■■■■□ 3.17
SNX1-210ENST00000560260 CDK13Q14004 1512 aaKnown RBP34.85■■■■□ 3.17
SNX1-210ENST00000560260 ASXL2Q76L83 1435 aa34.84■■■■□ 3.17
SNX1-210ENST00000560260 EPRSP07814 1512 aaKnown RBP34.82■■■■□ 3.16
SNX1-210ENST00000560260 VPS8Q8N3P4 1428 aa34.8■■■■□ 3.16
SNX1-210ENST00000560260 ATP1B4Q9UN42 357 aaPredicted RBP34.78■■■■□ 3.16
SNX1-210ENST00000560260 WDR7Q9Y4E6 1490 aa34.74■■■■□ 3.15
SNX1-210ENST00000560260 DIP2BQ9P265 1576 aa34.74■■■■□ 3.15
SNX1-210ENST00000560260 ABCC10Q5T3U5 1492 aa34.73■■■■□ 3.15
SNX1-210ENST00000560260 KIF13AQ9H1H9 1805 aa34.72■■■■□ 3.15
SNX1-210ENST00000560260 CCDC18Q5T9S5 1454 aa34.69■■■■□ 3.14
SNX1-210ENST00000560260 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP34.68■■■■□ 3.14
SNX1-210ENST00000560260 HNRNPUL2Q1KMD3 747 aaKnown RBP34.68■■■■□ 3.14
SNX1-210ENST00000560260 TRHP20396 242 aaPredicted RBP34.62■■■■□ 3.13
SNX1-210ENST00000560260 GLI2P10070 1586 aa34.59■■■■□ 3.13
SNX1-210ENST00000560260 MAGI3Q5TCQ9 1506 aa34.59■■■■□ 3.13
SNX1-210ENST00000560260 CFAP43Q8NDM7 1665 aa34.57■■■■□ 3.13
SNX1-210ENST00000560260 FAM69CQ0P6D2 419 aa34.55■■■■□ 3.12
SNX1-210ENST00000560260 PLEKHD1A6NEE1 506 aa34.53■■■■□ 3.12
SNX1-210ENST00000560260 KCNH8Q96L42 1107 aa34.53■■■■□ 3.12
SNX1-210ENST00000560260 TIAM1Q13009 1591 aa34.51■■■■□ 3.11
SNX1-210ENST00000560260 TROQ12816 1431 aaPredicted RBP34.51■■■■□ 3.11
SNX1-210ENST00000560260 MAP3K4Q9Y6R4 1608 aa34.49■■■■□ 3.11
SNX1-210ENST00000560260 KIF14Q15058 1648 aa34.47■■■■□ 3.11
SNX1-210ENST00000560260 ABCA9Q8IUA7 1624 aa34.46■■■■□ 3.11
SNX1-210ENST00000560260 CDK11AQ9UQ88 783 aaPredicted RBP34.45■■■■□ 3.11
SNX1-210ENST00000560260 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP34.43■■■■□ 3.1
SNX1-210ENST00000560260 TTC37Q6PGP7 1564 aa34.42■■■■□ 3.1
SNX1-210ENST00000560260 PPRC1Q5VV67 1664 aaKnown RBP34.42■■■■□ 3.1
SNX1-210ENST00000560260 MAP3K1Q13233 1512 aa34.42■■■■□ 3.1
SNX1-210ENST00000560260 TSPOAP1O95153 1857 aa34.39■■■■□ 3.1
SNX1-210ENST00000560260 EHBP1L1Q8N3D4 1523 aa34.38■■■■□ 3.09
SNX1-210ENST00000560260 MTUS2Q5JR59 1369 aa34.34■■■■□ 3.09
SNX1-210ENST00000560260 CD109Q6YHK3 1445 aa34.34■■■■□ 3.09
SNX1-210ENST00000560260 LRRC9Q6ZRR7 1453 aa34.32■■■■□ 3.08
SNX1-210ENST00000560260 KANK4Q5T7N3 995 aaPredicted RBP34.28■■■■□ 3.08
SNX1-210ENST00000560260 MYO5CQ9NQX4 1742 aa34.22■■■■□ 3.07
SNX1-210ENST00000560260 SUPT6HQ7KZ85 1726 aaKnown RBP34.2■■■■□ 3.07
SNX1-210ENST00000560260 APLP2Q06481 763 aa34.2■■■■□ 3.07
SNX1-210ENST00000560260 TEX14Q8IWB6 1497 aa34.19■■■■□ 3.06
SNX1-210ENST00000560260 CDC42BPAQ5VT25 1732 aa34.18■■■■□ 3.06
SNX1-210ENST00000560260 NCOA2Q15596 1464 aa34.17■■■■□ 3.06
SNX1-210ENST00000560260 PREX2Q70Z35 1606 aa34.16■■■■□ 3.06
SNX1-210ENST00000560260 PLCH2O75038 1416 aa34.16■■■■□ 3.06
SNX1-210ENST00000560260 CDC42BPBQ9Y5S2 1711 aa34.14■■■■□ 3.06
SNX1-210ENST00000560260 ARAP3Q8WWN8 1544 aa34.14■■■■□ 3.06
SNX1-210ENST00000560260 GPATCH8Q9UKJ3 1502 aaKnown RBP34.11■■■■□ 3.05
SNX1-210ENST00000560260 FANCAO15360 1455 aa34.09■■■■□ 3.05
SNX1-210ENST00000560260 ARHGAP5Q13017 1502 aa34.07■■■■□ 3.04
SNX1-210ENST00000560260 NEO1Q92859 1461 aa34.07■■■■□ 3.04
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms