RNA–Protein interactions for RNA: ENST00000559686.3

SNRPA1-208, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 2

Gene SNRPA1, Length 625 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-208ENST00000559686 ADAMTS12P58397 1594 aa16.55■□□□□ 0.24
SNRPA1-208ENST00000559686 SHROOM2Q13796 1616 aa16.53■□□□□ 0.24
SNRPA1-208ENST00000559686 NUP160Q12769 1436 aa16.52■□□□□ 0.23
SNRPA1-208ENST00000559686 FAM69CQ0P6D2 419 aa16.51■□□□□ 0.23
SNRPA1-208ENST00000559686 KDM4FA0A1W2PPD8 638 aa16.49■□□□□ 0.23
SNRPA1-208ENST00000559686 PRG4Q92954 1404 aaPredicted RBP16.47■□□□□ 0.23
SNRPA1-208ENST00000559686 TSPOAP1O95153 1857 aa16.46■□□□□ 0.23
SNRPA1-208ENST00000559686 KDM6BO15054 1643 aa16.46■□□□□ 0.23
SNRPA1-208ENST00000559686 ABCC10Q5T3U5 1492 aa16.44■□□□□ 0.22
SNRPA1-208ENST00000559686 FHAD1B1AJZ9 1412 aa16.44■□□□□ 0.22
SNRPA1-208ENST00000559686 NPM1P06748 294 aaKnown RBP eCLIP16.43■□□□□ 0.22
SNRPA1-208ENST00000559686 DIP2BQ9P265 1576 aa16.43■□□□□ 0.22
SNRPA1-208ENST00000559686 WRNQ14191 1432 aaPredicted RBP eCLIP16.41■□□□□ 0.22
SNRPA1-208ENST00000559686 JPH4Q96JJ6 628 aa16.4■□□□□ 0.22
SNRPA1-208ENST00000559686 ADCY10Q96PN6 1610 aa16.37■□□□□ 0.21
SNRPA1-208ENST00000559686 MAPKBP1O60336 1514 aa16.36■□□□□ 0.21
SNRPA1-208ENST00000559686 ERICH3Q5RHP9 1530 aa16.35■□□□□ 0.21
SNRPA1-208ENST00000559686 RUSC2Q8N2Y8 1516 aa16.33■□□□□ 0.2
SNRPA1-208ENST00000559686 BIVM-ERCC5R4GMW8 1640 aa16.33■□□□□ 0.2
SNRPA1-208ENST00000559686 TOP2BQ02880 1626 aa16.3■□□□□ 0.2
SNRPA1-208ENST00000559686 TTBK1Q5TCY1 1321 aaPredicted RBP16.28■□□□□ 0.2
SNRPA1-208ENST00000559686 ADGRL1O94910 1474 aa16.25■□□□□ 0.19
SNRPA1-208ENST00000559686 SUPT5HO00267 1087 aaKnown RBP16.22■□□□□ 0.19
SNRPA1-208ENST00000559686 HECW2Q9P2P5 1572 aa16.21■□□□□ 0.19
SNRPA1-208ENST00000559686 PPRC1Q5VV67 1664 aaKnown RBP16.18■□□□□ 0.18
SNRPA1-208ENST00000559686 CUL7Q14999 1698 aa16.14■□□□□ 0.17
SNRPA1-208ENST00000559686 KIAA0586Q9BVV6 1533 aa16.13■□□□□ 0.17
SNRPA1-208ENST00000559686 PTPRGP23470 1445 aa16.12■□□□□ 0.17
SNRPA1-208ENST00000559686 ASXL2Q76L83 1435 aa16.11■□□□□ 0.17
SNRPA1-208ENST00000559686 COL17A1Q9UMD9 1497 aaPredicted RBP16.09■□□□□ 0.17
SNRPA1-208ENST00000559686 ABCC2Q92887 1545 aa16.09■□□□□ 0.17
SNRPA1-208ENST00000559686 GLI2P10070 1586 aa16.08■□□□□ 0.16
SNRPA1-208ENST00000559686 PLB1Q6P1J6 1458 aa16.07■□□□□ 0.16
SNRPA1-208ENST00000559686 TNIKQ9UKE5 1360 aa16.03■□□□□ 0.16
SNRPA1-208ENST00000559686 MAP3K4Q9Y6R4 1608 aa16.03■□□□□ 0.16
SNRPA1-208ENST00000559686 CARMIL2Q6F5E8 1435 aa16.02■□□□□ 0.16
SNRPA1-208ENST00000559686 IGF1RP08069 1367 aa16.02■□□□□ 0.16
SNRPA1-208ENST00000559686 EPRSP07814 1512 aaKnown RBP16■□□□□ 0.15
SNRPA1-208ENST00000559686 TEX14Q8IWB6 1497 aa15.98■□□□□ 0.15
SNRPA1-208ENST00000559686 ZCCHC11Q5TAX3 1644 aaKnown RBP15.97■□□□□ 0.15
SNRPA1-208ENST00000559686 KIF27Q86VH2 1401 aa15.97■□□□□ 0.15
SNRPA1-208ENST00000559686 UACAQ9BZF9 1416 aa15.97■□□□□ 0.15
SNRPA1-208ENST00000559686 FBXO41Q8TF61 875 aa15.97■□□□□ 0.15
SNRPA1-208ENST00000559686 IQGAP2Q13576 1575 aa15.96■□□□□ 0.15
SNRPA1-208ENST00000559686 UHRF1BP1LA0JNW5 1464 aa15.95■□□□□ 0.14
SNRPA1-208ENST00000559686 KIF21BO75037 1637 aa15.93■□□□□ 0.14
SNRPA1-208ENST00000559686 CARMIL1Q5VZK9 1371 aa15.92■□□□□ 0.14
SNRPA1-208ENST00000559686 KDM5BQ9UGL1 1544 aa15.91■□□□□ 0.14
SNRPA1-208ENST00000559686 DISP1Q96F81 1524 aa15.9■□□□□ 0.14
SNRPA1-208ENST00000559686 WDR7Q9Y4E6 1490 aa15.86■□□□□ 0.13
SNRPA1-208ENST00000559686 KCNH8Q96L42 1107 aa15.86■□□□□ 0.13
SNRPA1-208ENST00000559686 CD109Q6YHK3 1445 aa15.84■□□□□ 0.13
SNRPA1-208ENST00000559686 KIAA0556O60303 1618 aa15.83■□□□□ 0.12
SNRPA1-208ENST00000559686 CFAP43Q8NDM7 1665 aa15.83■□□□□ 0.12
SNRPA1-208ENST00000559686 UGGT2Q9NYU1 1516 aa15.79■□□□□ 0.12
SNRPA1-208ENST00000559686 MAPK8IP2Q13387 824 aaPredicted RBP15.79■□□□□ 0.12
SNRPA1-208ENST00000559686 MAGI3Q5TCQ9 1506 aa15.78■□□□□ 0.12
SNRPA1-208ENST00000559686 SCAF1Q9H7N4 1312 aaKnown RBP15.77■□□□□ 0.12
SNRPA1-208ENST00000559686 DMRT2Q9Y5R5 561 aa15.77■□□□□ 0.12
SNRPA1-208ENST00000559686 PTPRMP28827 1452 aa15.77■□□□□ 0.11
SNRPA1-208ENST00000559686 LMTK3Q96Q04 1460 aa15.76■□□□□ 0.11
SNRPA1-208ENST00000559686 ADAMTSL3P82987 1691 aa15.74■□□□□ 0.11
SNRPA1-208ENST00000559686 ARID3CA6NKF2 412 aa15.74■□□□□ 0.11
SNRPA1-208ENST00000559686 RAPGEF2Q9Y4G8 1499 aa15.71■□□□□ 0.11
SNRPA1-208ENST00000559686 PCF11O94913 1555 aaKnown RBP15.71■□□□□ 0.11
SNRPA1-208ENST00000559686 MADDQ8WXG6 1647 aa15.71■□□□□ 0.11
SNRPA1-208ENST00000559686 CTTNBP2Q8WZ74 1663 aa15.7■□□□□ 0.1
SNRPA1-208ENST00000559686 ARID4BQ4LE39 1312 aaPredicted RBP15.69■□□□□ 0.1
SNRPA1-208ENST00000559686 ABCA8O94911 1581 aa15.69■□□□□ 0.1
SNRPA1-208ENST00000559686 BCORL1Q5H9F3 1711 aa15.68■□□□□ 0.1
SNRPA1-208ENST00000559686 ARAP3Q8WWN8 1544 aa15.68■□□□□ 0.1
SNRPA1-208ENST00000559686 RAPGEF3O95398 923 aa15.67■□□□□ 0.1
SNRPA1-208ENST00000559686 RIMS1Q86UR5 1692 aaKnown RBP15.67■□□□□ 0.1
SNRPA1-208ENST00000559686 HSPA2P54652 639 aa15.66■□□□□ 0.1
SNRPA1-208ENST00000559686 ILDR2Q71H61 639 aa15.62■□□□□ 0.09
SNRPA1-208ENST00000559686 GOLGA3Q08378 1498 aa15.62■□□□□ 0.09
SNRPA1-208ENST00000559686 DISP3Q9P2K9 1392 aa15.61■□□□□ 0.09
SNRPA1-208ENST00000559686 P3H3Q8IVL6 736 aa15.6■□□□□ 0.09
SNRPA1-208ENST00000559686 ABCA9Q8IUA7 1624 aa15.6■□□□□ 0.09
SNRPA1-208ENST00000559686 FRMPD1Q5SYB0 1578 aa15.59■□□□□ 0.09
SNRPA1-208ENST00000559686 CERKQ8TCT0 537 aa15.59■□□□□ 0.09
SNRPA1-208ENST00000559686 ATP10BO94823 1461 aa15.57■□□□□ 0.08
SNRPA1-208ENST00000559686 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.54■□□□□ 0.08
SNRPA1-208ENST00000559686 SOCS7O14512 581 aa15.54■□□□□ 0.08
SNRPA1-208ENST00000559686 HNRNPUL2Q1KMD3 747 aaKnown RBP15.54■□□□□ 0.08
SNRPA1-208ENST00000559686 ARHGEF40Q8TER5 1519 aa15.53■□□□□ 0.08
SNRPA1-208ENST00000559686 PHLDB1Q86UU1 1377 aa15.53■□□□□ 0.08
SNRPA1-208ENST00000559686 NEO1Q92859 1461 aa15.52■□□□□ 0.08
SNRPA1-208ENST00000559686 MLECQ14165 292 aa15.51■□□□□ 0.07
SNRPA1-208ENST00000559686 FAM9AQ8IZU1 332 aaPredicted RBP15.5■□□□□ 0.07
SNRPA1-208ENST00000559686 RICTORQ6R327 1708 aa15.49■□□□□ 0.07
SNRPA1-208ENST00000559686 SIGLEC1Q9BZZ2 1709 aa15.49■□□□□ 0.07
SNRPA1-208ENST00000559686 FER1L4A9Z1Z3 1794 aa15.47■□□□□ 0.07
SNRPA1-208ENST00000559686 RAPGEF6Q8TEU7 1601 aa15.46■□□□□ 0.07
SNRPA1-208ENST00000559686 DENND4BO75064 1496 aaPredicted RBP15.46■□□□□ 0.06
SNRPA1-208ENST00000559686 SPATA31D1Q6ZQQ2 1576 aa15.45■□□□□ 0.06
SNRPA1-208ENST00000559686 FANCAO15360 1455 aa15.45■□□□□ 0.06
SNRPA1-208ENST00000559686 POGZQ7Z3K3 1410 aa15.44■□□□□ 0.06
SNRPA1-208ENST00000559686 AKNAQ7Z591 1439 aa15.43■□□□□ 0.06
SNRPA1-208ENST00000559686 YEATS2Q9ULM3 1422 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms