RNA–Protein interactions for RNA: ENST00000559686.3

SNRPA1-208, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 2

Gene SNRPA1, Length 625 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-208ENST00000559686 AEBP2Q6ZN18 517 aaPredicted RBP23.25■■□□□ 1.31
SNRPA1-208ENST00000559686 NISCHQ9Y2I1 1504 aa23.03■■□□□ 1.28
SNRPA1-208ENST00000559686 CHIC1Q5VXU3 224 aa21.94■■□□□ 1.1
SNRPA1-208ENST00000559686 ABCC9O60706 1549 aa21.5■■□□□ 1.03
SNRPA1-208ENST00000559686 CCDC180Q9P1Z9 1646 aa20.88■□□□□ 0.93
SNRPA1-208ENST00000559686 DNAJC5BQ9UF47 199 aa20.57■□□□□ 0.88
SNRPA1-208ENST00000559686 RB1CC1Q8TDY2 1594 aa20.14■□□□□ 0.81
SNRPA1-208ENST00000559686 SENP3Q9H4L4 574 aaPredicted RBP19.95■□□□□ 0.78
SNRPA1-208ENST00000559686 PABPN1Q86U42 306 aaKnown RBP eCLIP19.94■□□□□ 0.78
SNRPA1-208ENST00000559686 DCAF8L2P0C7V8 631 aa19.84■□□□□ 0.77
SNRPA1-208ENST00000559686 NACADO15069 1562 aa19.83■□□□□ 0.77
SNRPA1-208ENST00000559686 UNC13AQ9UPW8 1703 aa19.77■□□□□ 0.76
SNRPA1-208ENST00000559686 PHF23Q9BUL5 403 aaPredicted RBP19.62■□□□□ 0.73
SNRPA1-208ENST00000559686 BICRAQ9NZM4 1560 aa19.59■□□□□ 0.73
SNRPA1-208ENST00000559686 CECR2Q9BXF3 1484 aa19.35■□□□□ 0.69
SNRPA1-208ENST00000559686 CC2D2AQ9P2K1 1620 aa19.35■□□□□ 0.69
SNRPA1-208ENST00000559686 MYO15BQ96JP2 1530 aa19.29■□□□□ 0.68
SNRPA1-208ENST00000559686 DNAJC5Q9H3Z4 198 aa19.18■□□□□ 0.66
SNRPA1-208ENST00000559686 EIF4G1Q04637 1599 aaKnown RBP19.15■□□□□ 0.66
SNRPA1-208ENST00000559686 SCRIBQ14160 1630 aa19.13■□□□□ 0.65
SNRPA1-208ENST00000559686 SHROOM4Q9ULL8 1493 aa19.11■□□□□ 0.65
SNRPA1-208ENST00000559686 ZCCHC6Q5VYS8 1495 aaKnown RBP18.97■□□□□ 0.63
SNRPA1-208ENST00000559686 DCAF1Q9Y4B6 1507 aa18.9■□□□□ 0.62
SNRPA1-208ENST00000559686 CUX2O14529 1486 aa18.6■□□□□ 0.57
SNRPA1-208ENST00000559686 ERCC6Q03468 1493 aa18.58■□□□□ 0.56
SNRPA1-208ENST00000559686 FOXD1Q16676 465 aa18.57■□□□□ 0.56
SNRPA1-208ENST00000559686 NESP48681 1621 aa18.31■□□□□ 0.52
SNRPA1-208ENST00000559686 TRIM41Q8WV44 630 aa18.31■□□□□ 0.52
SNRPA1-208ENST00000559686 NCAPD3P42695 1498 aa18.29■□□□□ 0.52
SNRPA1-208ENST00000559686 ATAD2BQ9ULI0 1458 aa18.22■□□□□ 0.51
SNRPA1-208ENST00000559686 THOC2Q8NI27 1593 aaKnown RBP18.18■□□□□ 0.5
SNRPA1-208ENST00000559686 SMARCA2P51531 1590 aa18.14■□□□□ 0.49
SNRPA1-208ENST00000559686 HMGXB3Q12766 1538 aa18.13■□□□□ 0.49
SNRPA1-208ENST00000559686 SMARCA4P51532 1647 aa18.11■□□□□ 0.49
SNRPA1-208ENST00000559686 KIF21AQ7Z4S6 1674 aa18.08■□□□□ 0.48
SNRPA1-208ENST00000559686 BAZ1BQ9UIG0 1483 aaKnown RBP18.05■□□□□ 0.48
SNRPA1-208ENST00000559686 LAMC3Q9Y6N6 1575 aa18.01■□□□□ 0.47
SNRPA1-208ENST00000559686 PDS5BQ9NTI5 1447 aa17.92■□□□□ 0.46
SNRPA1-208ENST00000559686 BAZ1AQ9NRL2 1556 aaPredicted RBP17.91■□□□□ 0.46
SNRPA1-208ENST00000559686 PEG3Q9GZU2 1588 aa17.84■□□□□ 0.45
SNRPA1-208ENST00000559686 MRC2Q9UBG0 1479 aa17.82■□□□□ 0.44
SNRPA1-208ENST00000559686 MROH2BQ7Z745 1585 aa17.79■□□□□ 0.44
SNRPA1-208ENST00000559686 WDR62O43379 1518 aa17.77■□□□□ 0.44
SNRPA1-208ENST00000559686 CADPSQ9ULU8 1353 aa17.75■□□□□ 0.43
SNRPA1-208ENST00000559686 OSCARQ8IYS5 282 aa17.7■□□□□ 0.42
SNRPA1-208ENST00000559686 CEP164Q9UPV0 1460 aa17.67■□□□□ 0.42
SNRPA1-208ENST00000559686 RIMBP3CA6NJZ7 1639 aa17.61■□□□□ 0.41
SNRPA1-208ENST00000559686 RIMBP3BA6NNM3 1639 aa17.61■□□□□ 0.41
SNRPA1-208ENST00000559686 RIMBP3Q9UFD9 1639 aa17.61■□□□□ 0.41
SNRPA1-208ENST00000559686 WIZO95785 1651 aa17.61■□□□□ 0.41
SNRPA1-208ENST00000559686 FANCD2Q9BXW9 1451 aa17.6■□□□□ 0.41
SNRPA1-208ENST00000559686 MSH5O43196 834 aa17.52■□□□□ 0.4
SNRPA1-208ENST00000559686 URB2Q14146 1524 aaKnown RBP17.5■□□□□ 0.39
SNRPA1-208ENST00000559686 PLPPR3Q6T4P5 718 aa17.48■□□□□ 0.39
SNRPA1-208ENST00000559686 ARHGEF11O15085 1522 aa17.46■□□□□ 0.39
SNRPA1-208ENST00000559686 TRHP20396 242 aaPredicted RBP17.43■□□□□ 0.38
SNRPA1-208ENST00000559686 CFTRP13569 1480 aa17.43■□□□□ 0.38
SNRPA1-208ENST00000559686 CYB5RLQ6IPT4 315 aa17.41■□□□□ 0.38
SNRPA1-208ENST00000559686 ZNF608Q9ULD9 1512 aaPredicted RBP17.39■□□□□ 0.37
SNRPA1-208ENST00000559686 POTEDQ86YR6 584 aa17.37■□□□□ 0.37
SNRPA1-208ENST00000559686 PIAS4Q8N2W9 510 aaPredicted RBP17.35■□□□□ 0.37
SNRPA1-208ENST00000559686 PRDM2Q13029 1718 aa17.3■□□□□ 0.36
SNRPA1-208ENST00000559686 IFT140Q96RY7 1462 aa17.29■□□□□ 0.36
SNRPA1-208ENST00000559686 CHD1O14646 1710 aa17.28■□□□□ 0.36
SNRPA1-208ENST00000559686 EIF4G3O43432 1585 aaKnown RBP17.28■□□□□ 0.36
SNRPA1-208ENST00000559686 TOP2AP11388 1531 aaKnown RBP17.26■□□□□ 0.35
SNRPA1-208ENST00000559686 ARAP1Q96P48 1450 aa17.25■□□□□ 0.35
SNRPA1-208ENST00000559686 FBLN2P98095 1184 aa17.23■□□□□ 0.35
SNRPA1-208ENST00000559686 TOPBP1Q92547 1522 aa17.21■□□□□ 0.34
SNRPA1-208ENST00000559686 RSF1Q96T23 1441 aaPredicted RBP17.2■□□□□ 0.34
SNRPA1-208ENST00000559686 PPP6R1Q9UPN7 881 aa17.17■□□□□ 0.34
SNRPA1-208ENST00000559686 AQRO60306 1485 aaKnown RBP eCLIP17.17■□□□□ 0.347e-12■□□□□ 9.9
SNRPA1-208ENST00000559686 ADRA2BP18089 450 aa17.14■□□□□ 0.33
SNRPA1-208ENST00000559686 CCDC88BA6NC98 1476 aa17.1■□□□□ 0.33
SNRPA1-208ENST00000559686 TARBP1Q13395 1621 aaKnown RBP17.1■□□□□ 0.33
SNRPA1-208ENST00000559686 DNMBPQ6XZF7 1577 aa17.09■□□□□ 0.33
SNRPA1-208ENST00000559686 ABCC8Q09428 1581 aa17.06■□□□□ 0.32
SNRPA1-208ENST00000559686 POLA1P09884 1462 aaPredicted RBP16.99■□□□□ 0.31
SNRPA1-208ENST00000559686 RAD54L2Q9Y4B4 1467 aa16.99■□□□□ 0.31
SNRPA1-208ENST00000559686 CLASP1Q7Z460 1538 aa16.98■□□□□ 0.31
SNRPA1-208ENST00000559686 TDRD9Q8NDG6 1382 aaKnown RBP16.98■□□□□ 0.31
SNRPA1-208ENST00000559686 SNAPC4Q5SXM2 1469 aa16.98■□□□□ 0.31
SNRPA1-208ENST00000559686 SYNJ1O43426 1573 aa16.94■□□□□ 0.3
SNRPA1-208ENST00000559686 CHMP7Q8WUX9 453 aaPredicted RBP16.93■□□□□ 0.3
SNRPA1-208ENST00000559686 SOGA1O94964 1423 aa16.92■□□□□ 0.3
SNRPA1-208ENST00000559686 GAPVD1Q14C86 1478 aa16.86■□□□□ 0.29
SNRPA1-208ENST00000559686 FGD5Q6ZNL6 1462 aa16.84■□□□□ 0.29
SNRPA1-208ENST00000559686 MAGI1Q96QZ7 1491 aaPredicted RBP16.83■□□□□ 0.28
SNRPA1-208ENST00000559686 GRIN2BQ13224 1484 aa16.8■□□□□ 0.28
SNRPA1-208ENST00000559686 SYNJ2O15056 1496 aa16.8■□□□□ 0.28
SNRPA1-208ENST00000559686 PBRM1Q86U86 1689 aa16.79■□□□□ 0.28
SNRPA1-208ENST00000559686 WDR97A6NE52 1622 aa16.79■□□□□ 0.28
SNRPA1-208ENST00000559686 ERCC6L2Q5T890 1561 aa16.76■□□□□ 0.27
SNRPA1-208ENST00000559686 CUX1P39880 1505 aa16.75■□□□□ 0.27
SNRPA1-208ENST00000559686 KIF13AQ9H1H9 1805 aa16.67■□□□□ 0.26
SNRPA1-208ENST00000559686 CEP170Q5SW79 1584 aa16.64■□□□□ 0.25
SNRPA1-208ENST00000559686 ABCA5Q8WWZ7 1642 aa16.63■□□□□ 0.25
SNRPA1-208ENST00000559686 GRIN2AQ12879 1464 aa16.6■□□□□ 0.25
SNRPA1-208ENST00000559686 ABCA10Q8WWZ4 1543 aa16.56■□□□□ 0.24
SNRPA1-208ENST00000559686 ILDR1Q86SU0 546 aaPredicted RBP16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms