RNA–Protein interactions for RNA: ENST00000558544.5

TPM1-214, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 1,399 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-214ENST00000558544 SHROOM2Q13796 1616 aa28.85■■■□□ 2.21
TPM1-214ENST00000558544 KIAA0586Q9BVV6 1533 aa28.84■■■□□ 2.21
TPM1-214ENST00000558544 RIMBP3CA6NJZ7 1639 aa28.83■■■□□ 2.21
TPM1-214ENST00000558544 RIMBP3BA6NNM3 1639 aa28.83■■■□□ 2.21
TPM1-214ENST00000558544 RIMBP3Q9UFD9 1639 aa28.83■■■□□ 2.21
TPM1-214ENST00000558544 ARHGEF11O15085 1522 aa28.81■■■□□ 2.2
TPM1-214ENST00000558544 IQGAP2Q13576 1575 aa28.8■■■□□ 2.2
TPM1-214ENST00000558544 GOLGA3Q08378 1498 aa28.73■■■□□ 2.19
TPM1-214ENST00000558544 ERCC6L2Q5T890 1561 aa28.72■■■□□ 2.19
TPM1-214ENST00000558544 EHMT2Q96KQ7 1210 aa28.71■■■□□ 2.19
TPM1-214ENST00000558544 JPH4Q96JJ6 628 aa28.7■■■□□ 2.18
TPM1-214ENST00000558544 PRG4Q92954 1404 aaPredicted RBP28.66■■■□□ 2.18
TPM1-214ENST00000558544 UGGT2Q9NYU1 1516 aa28.62■■■□□ 2.17
TPM1-214ENST00000558544 ARAP1Q96P48 1450 aa28.6■■■□□ 2.17
TPM1-214ENST00000558544 UBTFP17480 764 aaKnown RBP28.57■■■□□ 2.16
TPM1-214ENST00000558544 KIAA0556O60303 1618 aa28.54■■■□□ 2.16
TPM1-214ENST00000558544 DISP1Q96F81 1524 aa28.54■■■□□ 2.16
TPM1-214ENST00000558544 CARMIL2Q6F5E8 1435 aa28.52■■■□□ 2.16
TPM1-214ENST00000558544 SAMD9Q5K651 1589 aa28.47■■■□□ 2.15
TPM1-214ENST00000558544 CYB5RLQ6IPT4 315 aa28.45■■■□□ 2.14
TPM1-214ENST00000558544 RANGAP1P46060 587 aaPredicted RBP28.44■■■□□ 2.14
TPM1-214ENST00000558544 TNIKQ9UKE5 1360 aa28.4■■■□□ 2.14
TPM1-214ENST00000558544 EFCAB5A4FU69 1503 aa28.37■■■□□ 2.13
TPM1-214ENST00000558544 TTBK1Q5TCY1 1321 aaPredicted RBP28.37■■■□□ 2.13
TPM1-214ENST00000558544 PTPRGP23470 1445 aa28.34■■■□□ 2.13
TPM1-214ENST00000558544 LOC105371045A0A1W2PR82 267 aa28.34■■■□□ 2.13
TPM1-214ENST00000558544 P3H3Q8IVL6 736 aa28.33■■■□□ 2.13
TPM1-214ENST00000558544 FHOD3Q2V2M9 1422 aa28.28■■■□□ 2.12
TPM1-214ENST00000558544 ARHGAP35Q9NRY4 1499 aa28.28■■■□□ 2.12
TPM1-214ENST00000558544 ADCY10Q96PN6 1610 aa28.27■■■□□ 2.12
TPM1-214ENST00000558544 CLIP1P30622 1438 aa28.2■■■□□ 2.1
TPM1-214ENST00000558544 ABCA8O94911 1581 aa28.18■■■□□ 2.1
TPM1-214ENST00000558544 UACAQ9BZF9 1416 aa28.18■■■□□ 2.1
TPM1-214ENST00000558544 PLB1Q6P1J6 1458 aa28.17■■■□□ 2.1
TPM1-214ENST00000558544 ABCC2Q92887 1545 aa28.17■■■□□ 2.1
TPM1-214ENST00000558544 CEP162Q5TB80 1403 aa28.17■■■□□ 2.1
TPM1-214ENST00000558544 UHRF1BP1LA0JNW5 1464 aa28.14■■■□□ 2.1
TPM1-214ENST00000558544 RAPGEF6Q8TEU7 1601 aa28.13■■■□□ 2.09
TPM1-214ENST00000558544 ZCCHC11Q5TAX3 1644 aaKnown RBP28.06■■■□□ 2.08
TPM1-214ENST00000558544 FMN1Q68DA7 1419 aa28.06■■■□□ 2.08
TPM1-214ENST00000558544 KDM5BQ9UGL1 1544 aa28.02■■■□□ 2.08
TPM1-214ENST00000558544 NPM1P06748 294 aaKnown RBP eCLIP28■■■□□ 2.07
TPM1-214ENST00000558544 PCF11O94913 1555 aaKnown RBP27.98■■■□□ 2.07
TPM1-214ENST00000558544 NUP153P49790 1475 aaKnown RBP27.98■■■□□ 2.07
TPM1-214ENST00000558544 HECW1Q76N89 1606 aa27.97■■■□□ 2.07
TPM1-214ENST00000558544 MAPKBP1O60336 1514 aa27.97■■■□□ 2.07
TPM1-214ENST00000558544 LRRIQ1Q96JM4 1722 aa27.94■■■□□ 2.06
TPM1-214ENST00000558544 ARID3CA6NKF2 412 aa27.93■■■□□ 2.06
TPM1-214ENST00000558544 ATP10BO94823 1461 aa27.9■■■□□ 2.06
TPM1-214ENST00000558544 CASKIN1Q8WXD9 1431 aa27.89■■■□□ 2.05
TPM1-214ENST00000558544 ATP1B4Q9UN42 357 aaPredicted RBP27.87■■■□□ 2.05
TPM1-214ENST00000558544 FYCO1Q9BQS8 1478 aa27.87■■■□□ 2.05
TPM1-214ENST00000558544 ASXL2Q76L83 1435 aa27.87■■■□□ 2.05
TPM1-214ENST00000558544 CDK13Q14004 1512 aaKnown RBP27.86■■■□□ 2.05
TPM1-214ENST00000558544 KIF13AQ9H1H9 1805 aa27.86■■■□□ 2.05
TPM1-214ENST00000558544 EPRSP07814 1512 aaKnown RBP27.84■■■□□ 2.05
TPM1-214ENST00000558544 DIP2BQ9P265 1576 aa27.81■■■□□ 2.04
TPM1-214ENST00000558544 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.81■■■□□ 2.04
TPM1-214ENST00000558544 HNRNPUL2Q1KMD3 747 aaKnown RBP27.81■■■□□ 2.04
TPM1-214ENST00000558544 VPS8Q8N3P4 1428 aa27.79■■■□□ 2.04
TPM1-214ENST00000558544 WDR7Q9Y4E6 1490 aa27.79■■■□□ 2.04
TPM1-214ENST00000558544 ABCC10Q5T3U5 1492 aa27.77■■■□□ 2.04
TPM1-214ENST00000558544 CCDC18Q5T9S5 1454 aa27.77■■■□□ 2.04
TPM1-214ENST00000558544 TRHP20396 242 aaPredicted RBP27.76■■■□□ 2.03
TPM1-214ENST00000558544 CFAP43Q8NDM7 1665 aa27.68■■■□□ 2.02
TPM1-214ENST00000558544 GLI2P10070 1586 aa27.68■■■□□ 2.02
TPM1-214ENST00000558544 FAM69CQ0P6D2 419 aa27.66■■■□□ 2.02
TPM1-214ENST00000558544 TSPOAP1O95153 1857 aa27.65■■■□□ 2.02
TPM1-214ENST00000558544 PLEKHD1A6NEE1 506 aa27.64■■■□□ 2.02
TPM1-214ENST00000558544 KCNH8Q96L42 1107 aa27.64■■■□□ 2.02
TPM1-214ENST00000558544 MAGI3Q5TCQ9 1506 aa27.62■■■□□ 2.01
TPM1-214ENST00000558544 MAP3K4Q9Y6R4 1608 aa27.62■■■□□ 2.01
TPM1-214ENST00000558544 TIAM1Q13009 1591 aa27.6■■■□□ 2.01
TPM1-214ENST00000558544 CDK11AQ9UQ88 783 aaPredicted RBP27.6■■■□□ 2.01
TPM1-214ENST00000558544 ABCA9Q8IUA7 1624 aa27.59■■■□□ 2.01
TPM1-214ENST00000558544 KIF14Q15058 1648 aa27.58■■■□□ 2.01
TPM1-214ENST00000558544 TROQ12816 1431 aaPredicted RBP27.58■■■□□ 2.01
TPM1-214ENST00000558544 PPRC1Q5VV67 1664 aaKnown RBP27.56■■■□□ 2
TPM1-214ENST00000558544 TTC37Q6PGP7 1564 aa27.54■■■□□ 2
TPM1-214ENST00000558544 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.53■■■□□ 2
TPM1-214ENST00000558544 EHBP1L1Q8N3D4 1523 aa27.51■■□□□ 1.99
TPM1-214ENST00000558544 MAP3K1Q13233 1512 aa27.5■■□□□ 1.99
TPM1-214ENST00000558544 MTUS2Q5JR59 1369 aa27.48■■□□□ 1.99
TPM1-214ENST00000558544 CD109Q6YHK3 1445 aa27.47■■□□□ 1.99
TPM1-214ENST00000558544 MYO5CQ9NQX4 1742 aa27.46■■□□□ 1.99
TPM1-214ENST00000558544 LRRC9Q6ZRR7 1453 aa27.43■■□□□ 1.98
TPM1-214ENST00000558544 SUPT6HQ7KZ85 1726 aaKnown RBP27.42■■□□□ 1.98
TPM1-214ENST00000558544 APLP2Q06481 763 aa27.42■■□□□ 1.98
TPM1-214ENST00000558544 CDC42BPAQ5VT25 1732 aa27.39■■□□□ 1.98
TPM1-214ENST00000558544 TEX14Q8IWB6 1497 aa27.39■■□□□ 1.98
TPM1-214ENST00000558544 PREX2Q70Z35 1606 aa27.36■■□□□ 1.97
TPM1-214ENST00000558544 CDC42BPBQ9Y5S2 1711 aa27.36■■□□□ 1.97
TPM1-214ENST00000558544 KANK4Q5T7N3 995 aaPredicted RBP27.35■■□□□ 1.97
TPM1-214ENST00000558544 CFAP74Q9C0B2 1584 aa27.32■■□□□ 1.96
TPM1-214ENST00000558544 NCOA2Q15596 1464 aa27.32■■□□□ 1.96
TPM1-214ENST00000558544 PLCH2O75038 1416 aa27.3■■□□□ 1.96
TPM1-214ENST00000558544 ITSN2Q9NZM3 1697 aa27.3■■□□□ 1.96
TPM1-214ENST00000558544 ARAP3Q8WWN8 1544 aa27.3■■□□□ 1.96
TPM1-214ENST00000558544 ARHGAP5Q13017 1502 aa27.29■■□□□ 1.96
TPM1-214ENST00000558544 KDM6BO15054 1643 aa27.28■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms