RNA–Protein interactions for RNA: ENST00000558544.5

TPM1-214, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 1,399 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-214ENST00000558544 NISCHQ9Y2I1 1504 aa41.83■■■■■ 4.29
TPM1-214ENST00000558544 CCDC180Q9P1Z9 1646 aa37.12■■■■□ 3.53
TPM1-214ENST00000558544 ABCC9O60706 1549 aa35.92■■■■□ 3.34
TPM1-214ENST00000558544 ZCCHC6Q5VYS8 1495 aaKnown RBP34.95■■■■□ 3.19
TPM1-214ENST00000558544 DCAF8L2P0C7V8 631 aa34.76■■■■□ 3.16
TPM1-214ENST00000558544 NACADO15069 1562 aa34.74■■■■□ 3.15
TPM1-214ENST00000558544 RB1CC1Q8TDY2 1594 aa34.72■■■■□ 3.15
TPM1-214ENST00000558544 DCAF1Q9Y4B6 1507 aa34.61■■■■□ 3.13
TPM1-214ENST00000558544 MYO15BQ96JP2 1530 aa34.6■■■■□ 3.13
TPM1-214ENST00000558544 UNC13AQ9UPW8 1703 aa34.09■■■■□ 3.05
TPM1-214ENST00000558544 SCRIBQ14160 1630 aa33.91■■■■□ 3.02
TPM1-214ENST00000558544 BICRAQ9NZM4 1560 aa33.67■■■□□ 2.98
TPM1-214ENST00000558544 PABPN1Q86U42 306 aaKnown RBP eCLIP33.58■■■□□ 2.971e-13■■■□□ 18.2
TPM1-214ENST00000558544 SHROOM4Q9ULL8 1493 aa33.29■■■□□ 2.92
TPM1-214ENST00000558544 EIF4G1Q04637 1599 aaKnown RBP32.75■■■□□ 2.83
TPM1-214ENST00000558544 DNAJC5BQ9UF47 199 aa32.57■■■□□ 2.8
TPM1-214ENST00000558544 CECR2Q9BXF3 1484 aa32.56■■■□□ 2.8
TPM1-214ENST00000558544 CC2D2AQ9P2K1 1620 aa32.54■■■□□ 2.8
TPM1-214ENST00000558544 SMARCA4P51532 1647 aa32.45■■■□□ 2.79
TPM1-214ENST00000558544 BAZ1AQ9NRL2 1556 aaPredicted RBP32.41■■■□□ 2.78
TPM1-214ENST00000558544 MROH2BQ7Z745 1585 aa32.27■■■□□ 2.76
TPM1-214ENST00000558544 ATAD2BQ9ULI0 1458 aa32.11■■■□□ 2.73
TPM1-214ENST00000558544 SMARCA2P51531 1590 aa32.11■■■□□ 2.73
TPM1-214ENST00000558544 PEG3Q9GZU2 1588 aa32.08■■■□□ 2.73
TPM1-214ENST00000558544 WIZO95785 1651 aa32.01■■■□□ 2.71
TPM1-214ENST00000558544 NCAPD3P42695 1498 aa32■■■□□ 2.71
TPM1-214ENST00000558544 RSF1Q96T23 1441 aaPredicted RBP31.98■■■□□ 2.71
TPM1-214ENST00000558544 HMGXB3Q12766 1538 aa31.95■■■□□ 2.7
TPM1-214ENST00000558544 BAZ1BQ9UIG0 1483 aaKnown RBP31.89■■■□□ 2.69
TPM1-214ENST00000558544 TOP2AP11388 1531 aaKnown RBP31.64■■■□□ 2.66
TPM1-214ENST00000558544 SUPT5HO00267 1087 aaKnown RBP31.45■■■□□ 2.63
TPM1-214ENST00000558544 CCDC88BA6NC98 1476 aa31.23■■■□□ 2.59
TPM1-214ENST00000558544 NESP48681 1621 aa31.2■■■□□ 2.59
TPM1-214ENST00000558544 LAMC3Q9Y6N6 1575 aa31.17■■■□□ 2.58
TPM1-214ENST00000558544 CADPSQ9ULU8 1353 aa31.08■■■□□ 2.57
TPM1-214ENST00000558544 CFTRP13569 1480 aa31■■■□□ 2.55
TPM1-214ENST00000558544 PRDM2Q13029 1718 aa30.99■■■□□ 2.55
TPM1-214ENST00000558544 KIF21AQ7Z4S6 1674 aa30.95■■■□□ 2.55
TPM1-214ENST00000558544 ERCC6Q03468 1493 aa30.92■■■□□ 2.54
TPM1-214ENST00000558544 PDS5BQ9NTI5 1447 aa30.88■■■□□ 2.53
TPM1-214ENST00000558544 FANCD2Q9BXW9 1451 aa30.78■■■□□ 2.52
TPM1-214ENST00000558544 CEP164Q9UPV0 1460 aa30.72■■■□□ 2.51
TPM1-214ENST00000558544 THOC2Q8NI27 1593 aaKnown RBP30.7■■■□□ 2.51
TPM1-214ENST00000558544 MRC2Q9UBG0 1479 aa30.59■■■□□ 2.49
TPM1-214ENST00000558544 WDR62O43379 1518 aa30.51■■■□□ 2.47
TPM1-214ENST00000558544 URB2Q14146 1524 aaKnown RBP30.47■■■□□ 2.47
TPM1-214ENST00000558544 CUX2O14529 1486 aa30.44■■■□□ 2.46
TPM1-214ENST00000558544 DNMBPQ6XZF7 1577 aa30.36■■■□□ 2.45
TPM1-214ENST00000558544 TOPBP1Q92547 1522 aa30.34■■■□□ 2.45
TPM1-214ENST00000558544 ABCC8Q09428 1581 aa30.3■■■□□ 2.44
TPM1-214ENST00000558544 CUX1P39880 1505 aa30.26■■■□□ 2.43
TPM1-214ENST00000558544 WRNQ14191 1432 aaPredicted RBP eCLIP30.16■■■□□ 2.42
TPM1-214ENST00000558544 SYNJ1O43426 1573 aa30.15■■■□□ 2.42
TPM1-214ENST00000558544 BIVM-ERCC5R4GMW8 1640 aa30.14■■■□□ 2.42
TPM1-214ENST00000558544 TOP2BQ02880 1626 aa30.11■■■□□ 2.41
TPM1-214ENST00000558544 POLA1P09884 1462 aaPredicted RBP30.11■■■□□ 2.41
TPM1-214ENST00000558544 FGD5Q6ZNL6 1462 aa30.1■■■□□ 2.41
TPM1-214ENST00000558544 IFT140Q96RY7 1462 aa30.03■■■□□ 2.4
TPM1-214ENST00000558544 TARBP1Q13395 1621 aaKnown RBP30.02■■■□□ 2.4
TPM1-214ENST00000558544 RAD54L2Q9Y4B4 1467 aa29.98■■■□□ 2.39
TPM1-214ENST00000558544 SOGA1O94964 1423 aa29.94■■■□□ 2.38
TPM1-214ENST00000558544 WDR97A6NE52 1622 aa29.92■■■□□ 2.38
TPM1-214ENST00000558544 ZNF608Q9ULD9 1512 aaPredicted RBP29.89■■■□□ 2.38
TPM1-214ENST00000558544 EIF4G3O43432 1585 aaKnown RBP29.87■■■□□ 2.37
TPM1-214ENST00000558544 ABCA10Q8WWZ4 1543 aa29.79■■■□□ 2.36
TPM1-214ENST00000558544 AQRO60306 1485 aaKnown RBP eCLIP29.75■■■□□ 2.351e-12■■■■□ 23
TPM1-214ENST00000558544 TDRD9Q8NDG6 1382 aaKnown RBP29.73■■■□□ 2.35
TPM1-214ENST00000558544 ABCA5Q8WWZ7 1642 aa29.72■■■□□ 2.35
TPM1-214ENST00000558544 PBRM1Q86U86 1689 aa29.69■■■□□ 2.34
TPM1-214ENST00000558544 TRIM41Q8WV44 630 aa29.65■■■□□ 2.34
TPM1-214ENST00000558544 GAPVD1Q14C86 1478 aa29.63■■■□□ 2.33
TPM1-214ENST00000558544 GRIN2BQ13224 1484 aa29.57■■■□□ 2.32
TPM1-214ENST00000558544 CHIC1Q5VXU3 224 aa29.53■■■□□ 2.32
TPM1-214ENST00000558544 SNAPC4Q5SXM2 1469 aa29.52■■■□□ 2.32
TPM1-214ENST00000558544 KIF27Q86VH2 1401 aa29.49■■■□□ 2.31
TPM1-214ENST00000558544 CHD1O14646 1710 aa29.47■■■□□ 2.31
TPM1-214ENST00000558544 MAGI1Q96QZ7 1491 aaPredicted RBP29.46■■■□□ 2.31
TPM1-214ENST00000558544 ERICH3Q5RHP9 1530 aa29.46■■■□□ 2.31
TPM1-214ENST00000558544 ADAMTS12P58397 1594 aa29.41■■■□□ 2.3
TPM1-214ENST00000558544 RUSC2Q8N2Y8 1516 aa29.38■■■□□ 2.29
TPM1-214ENST00000558544 SYNJ2O15056 1496 aa29.34■■■□□ 2.29
TPM1-214ENST00000558544 CUL7Q14999 1698 aa29.32■■■□□ 2.28
TPM1-214ENST00000558544 FBLN2P98095 1184 aa29.3■■■□□ 2.28
TPM1-214ENST00000558544 IGF1RP08069 1367 aa29.29■■■□□ 2.28
TPM1-214ENST00000558544 FHAD1B1AJZ9 1412 aa29.28■■■□□ 2.28
TPM1-214ENST00000558544 CHMP7Q8WUX9 453 aaPredicted RBP29.26■■■□□ 2.27
TPM1-214ENST00000558544 GRIN2AQ12879 1464 aa29.22■■■□□ 2.27
TPM1-214ENST00000558544 OSCARQ8IYS5 282 aa29.18■■■□□ 2.26
TPM1-214ENST00000558544 EEA1Q15075 1411 aa29.15■■■□□ 2.26
TPM1-214ENST00000558544 CARMIL1Q5VZK9 1371 aa29.14■■■□□ 2.26
TPM1-214ENST00000558544 CEP170Q5SW79 1584 aa29.1■■■□□ 2.25
TPM1-214ENST00000558544 FAM9AQ8IZU1 332 aaPredicted RBP29.08■■■□□ 2.25
TPM1-214ENST00000558544 CLASP1Q7Z460 1538 aa29.06■■■□□ 2.24
TPM1-214ENST00000558544 RAPGEF2Q9Y4G8 1499 aa29.04■■■□□ 2.24
TPM1-214ENST00000558544 NUP160Q12769 1436 aa29.04■■■□□ 2.24
TPM1-214ENST00000558544 CSRNP3Q8WYN3 585 aa29.03■■■□□ 2.24
TPM1-214ENST00000558544 PRXQ9BXM0 1461 aa29.02■■■□□ 2.24
TPM1-214ENST00000558544 DNAJC5Q9H3Z4 198 aa29.01■■■□□ 2.23
TPM1-214ENST00000558544 KIF21BO75037 1637 aa28.91■■■□□ 2.22
TPM1-214ENST00000558544 CTTNBP2Q8WZ74 1663 aa28.9■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms