RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 CFAP43Q8NDM7 1665 aa23.35■■□□□ 1.33
SHMT2-231ENST00000557433 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.31■■□□□ 1.32
SHMT2-231ENST00000557433 CADPSQ9ULU8 1353 aa23.3■■□□□ 1.32
SHMT2-231ENST00000557433 FGD5Q6ZNL6 1462 aa23.27■■□□□ 1.32
SHMT2-231ENST00000557433 PHLDB1Q86UU1 1377 aa23.25■■□□□ 1.31
SHMT2-231ENST00000557433 ITGAEP38570 1179 aa23.24■■□□□ 1.31
SHMT2-231ENST00000557433 EFCAB5A4FU69 1503 aa23.24■■□□□ 1.31
SHMT2-231ENST00000557433 AQRO60306 1485 aaKnown RBP eCLIP23.24■■□□□ 1.314e-7■■■■□ 22.4
SHMT2-231ENST00000557433 FYCO1Q9BQS8 1478 aa23.22■■□□□ 1.31
SHMT2-231ENST00000557433 PCF11O94913 1555 aaKnown RBP23.2■■□□□ 1.3
SHMT2-231ENST00000557433 WDR97A6NE52 1622 aa23.17■■□□□ 1.3
SHMT2-231ENST00000557433 CASKIN1Q8WXD9 1431 aa23.16■■□□□ 1.3
SHMT2-231ENST00000557433 CC2D2AQ9P2K1 1620 aa23.13■■□□□ 1.29
SHMT2-231ENST00000557433 CCER2I3L3R5 266 aa23.13■■□□□ 1.29
SHMT2-231ENST00000557433 FAM50AQ14320 339 aaKnown RBP23.11■■□□□ 1.29
SHMT2-231ENST00000557433 TSHZ2Q9NRE2 1034 aa23.11■■□□□ 1.29
SHMT2-231ENST00000557433 CUL7Q14999 1698 aa23.11■■□□□ 1.29
SHMT2-231ENST00000557433 ABCA10Q8WWZ4 1543 aa23.1■■□□□ 1.29
SHMT2-231ENST00000557433 PPP1R15AO75807 674 aaPredicted RBP23.1■■□□□ 1.29
SHMT2-231ENST00000557433 DNMBPQ6XZF7 1577 aa23.08■■□□□ 1.29
SHMT2-231ENST00000557433 FMN1Q68DA7 1419 aa23.06■■□□□ 1.28
SHMT2-231ENST00000557433 FANCD2Q9BXW9 1451 aa23.04■■□□□ 1.28
SHMT2-231ENST00000557433 DDX10Q13206 875 aaKnown RBP23.04■■□□□ 1.28
SHMT2-231ENST00000557433 SIN3AQ96ST3 1273 aa23.04■■□□□ 1.28
SHMT2-231ENST00000557433 CTTNBP2Q8WZ74 1663 aa23.03■■□□□ 1.28
SHMT2-231ENST00000557433 FHOD3Q2V2M9 1422 aa23.01■■□□□ 1.27
SHMT2-231ENST00000557433 FGD6Q6ZV73 1430 aa23.01■■□□□ 1.27
SHMT2-231ENST00000557433 KCNH8Q96L42 1107 aa23■■□□□ 1.27
SHMT2-231ENST00000557433 ANP32CO43423 234 aa22.98■■□□□ 1.27
SHMT2-231ENST00000557433 HFM1A2PYH4 1435 aa22.98■■□□□ 1.27
SHMT2-231ENST00000557433 UACAQ9BZF9 1416 aa22.97■■□□□ 1.27
SHMT2-231ENST00000557433 NEFLP07196 543 aa22.96■■□□□ 1.27
SHMT2-231ENST00000557433 THOC2Q8NI27 1593 aaKnown RBP22.95■■□□□ 1.27
SHMT2-231ENST00000557433 TOPBP1Q92547 1522 aa22.94■■□□□ 1.26
SHMT2-231ENST00000557433 POLA1P09884 1462 aaPredicted RBP22.94■■□□□ 1.26
SHMT2-231ENST00000557433 SNAPC4Q5SXM2 1469 aa22.94■■□□□ 1.26
SHMT2-231ENST00000557433 CCDC18Q5T9S5 1454 aa22.94■■□□□ 1.26
SHMT2-231ENST00000557433 TONSLQ96HA7 1378 aa22.94■■□□□ 1.26
SHMT2-231ENST00000557433 ANP32EQ9BTT0 268 aa22.91■■□□□ 1.26
SHMT2-231ENST00000557433 FKBP8Q14318 412 aa22.9■■□□□ 1.26
SHMT2-231ENST00000557433 DNAJC5BQ9UF47 199 aa22.9■■□□□ 1.26
SHMT2-231ENST00000557433 PTPN23Q9H3S7 1636 aa22.9■■□□□ 1.26
SHMT2-231ENST00000557433 P3H3Q8IVL6 736 aa22.9■■□□□ 1.26
SHMT2-231ENST00000557433 ATP1B4Q9UN42 357 aaPredicted RBP22.89■■□□□ 1.25
SHMT2-231ENST00000557433 SAMD9Q5K651 1589 aa22.88■■□□□ 1.25
SHMT2-231ENST00000557433 RAD54L2Q9Y4B4 1467 aa22.88■■□□□ 1.25
SHMT2-231ENST00000557433 MTUS2Q5JR59 1369 aa22.88■■□□□ 1.25
SHMT2-231ENST00000557433 MYOM3Q5VTT5 1437 aa22.85■■□□□ 1.25
SHMT2-231ENST00000557433 EHBP1L1Q8N3D4 1523 aa22.84■■□□□ 1.25
SHMT2-231ENST00000557433 KIF21AQ7Z4S6 1674 aa22.83■■□□□ 1.25
SHMT2-231ENST00000557433 SUPT6HQ7KZ85 1726 aaKnown RBP22.82■■□□□ 1.24
SHMT2-231ENST00000557433 NAIPQ13075 1403 aa22.82■■□□□ 1.24
SHMT2-231ENST00000557433 GRIN2BQ13224 1484 aa22.82■■□□□ 1.24
SHMT2-231ENST00000557433 NCOA2Q15596 1464 aa22.8■■□□□ 1.24
SHMT2-231ENST00000557433 PTPRKQ15262 1439 aa22.78■■□□□ 1.24
SHMT2-231ENST00000557433 AKNAQ7Z591 1439 aa22.77■■□□□ 1.24
SHMT2-231ENST00000557433 ABCA5Q8WWZ7 1642 aa22.77■■□□□ 1.24
SHMT2-231ENST00000557433 ARHGEF11O15085 1522 aa22.76■■□□□ 1.23
SHMT2-231ENST00000557433 BCANQ96GW7 911 aa22.74■■□□□ 1.23
SHMT2-231ENST00000557433 UGGT2Q9NYU1 1516 aa22.74■■□□□ 1.23
SHMT2-231ENST00000557433 TCOF1Q13428 1488 aaKnown RBP22.74■■□□□ 1.23
SHMT2-231ENST00000557433 KDM5BQ9UGL1 1544 aa22.73■■□□□ 1.23
SHMT2-231ENST00000557433 LAMC3Q9Y6N6 1575 aa22.73■■□□□ 1.23
SHMT2-231ENST00000557433 LRRIQ1Q96JM4 1722 aa22.72■■□□□ 1.23
SHMT2-231ENST00000557433 HECW1Q76N89 1606 aa22.71■■□□□ 1.23
SHMT2-231ENST00000557433 GCC2Q8IWJ2 1684 aa22.71■■□□□ 1.23
SHMT2-231ENST00000557433 TRIM52Q96A61 297 aa22.7■■□□□ 1.22
SHMT2-231ENST00000557433 HIRIP3Q9BW71 556 aaPredicted RBP22.69■■□□□ 1.22
SHMT2-231ENST00000557433 ERICH6BQ5W0A0 696 aa22.68■■□□□ 1.22
SHMT2-231ENST00000557433 GAPVD1Q14C86 1478 aa22.67■■□□□ 1.22
SHMT2-231ENST00000557433 URB2Q14146 1524 aaKnown RBP22.65■■□□□ 1.22
SHMT2-231ENST00000557433 RBM19Q9Y4C8 960 aaKnown RBP22.65■■□□□ 1.22
SHMT2-231ENST00000557433 MIA2Q96PC5 1412 aa22.63■■□□□ 1.21
SHMT2-231ENST00000557433 NESP48681 1621 aa22.6■■□□□ 1.21
SHMT2-231ENST00000557433 EIF4G2P78344 907 aaKnown RBP eCLIP22.57■■□□□ 1.2
SHMT2-231ENST00000557433 CNTLNQ9NXG0 1405 aa22.56■■□□□ 1.2
SHMT2-231ENST00000557433 PDS5BQ9NTI5 1447 aa22.55■■□□□ 1.2
SHMT2-231ENST00000557433 MAGI3Q5TCQ9 1506 aa22.55■■□□□ 1.2
SHMT2-231ENST00000557433 TDRD9Q8NDG6 1382 aaKnown RBP22.55■■□□□ 1.2
SHMT2-231ENST00000557433 HSPA5P11021 654 aaKnown RBP22.54■■□□□ 1.2
SHMT2-231ENST00000557433 HNRNPUQ00839 825 aaKnown RBP eCLIP22.54■■□□□ 1.2
SHMT2-231ENST00000557433 WASHC2AQ641Q2 1341 aa22.54■■□□□ 1.2
SHMT2-231ENST00000557433 DENND4BO75064 1496 aaPredicted RBP22.53■■□□□ 1.2
SHMT2-231ENST00000557433 EPRSP07814 1512 aaKnown RBP22.5■■□□□ 1.19
SHMT2-231ENST00000557433 FANCIQ9NVI1 1328 aa22.5■■□□□ 1.19
SHMT2-231ENST00000557433 ROCK1Q13464 1354 aa22.5■■□□□ 1.19
SHMT2-231ENST00000557433 NCOA1Q15788 1441 aa22.48■■□□□ 1.19
SHMT2-231ENST00000557433 CDK11AQ9UQ88 783 aaPredicted RBP22.48■■□□□ 1.19
SHMT2-231ENST00000557433 IQGAP2Q13576 1575 aa22.47■■□□□ 1.19
SHMT2-231ENST00000557433 TARBP1Q13395 1621 aaKnown RBP22.46■■□□□ 1.19
SHMT2-231ENST00000557433 MPHOSPH9Q99550 1183 aa22.46■■□□□ 1.19
SHMT2-231ENST00000557433 RRP7BPQ9NSQ0 103 aa22.46■■□□□ 1.19
SHMT2-231ENST00000557433 CCDC7Q96M83 1385 aa22.44■■□□□ 1.18
SHMT2-231ENST00000557433 WDR62O43379 1518 aa22.43■■□□□ 1.18
SHMT2-231ENST00000557433 RPRD2Q5VT52 1461 aaKnown RBP22.43■■□□□ 1.18
SHMT2-231ENST00000557433 PPP4R2Q9NY27 417 aa22.41■■□□□ 1.18
SHMT2-231ENST00000557433 KDM6BO15054 1643 aa22.4■■□□□ 1.18
SHMT2-231ENST00000557433 POLR1AO95602 1720 aaPredicted RBP22.4■■□□□ 1.18
SHMT2-231ENST00000557433 PBRM1Q86U86 1689 aa22.4■■□□□ 1.18
SHMT2-231ENST00000557433 ANKRD30BQ9BXX2 1392 aa22.39■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 116.4 ms