RNA–Protein interactions for RNA: ENST00000556971.1

ABCD4-226, Transcript of ATP binding cassette subfamily D member 4, humanhuman

TSL 3

Gene ABCD4, Length 637 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD4-226ENST00000556971 SHROOM2Q13796 1616 aa24.02■■□□□ 1.44
ABCD4-226ENST00000556971 NPM1P06748 294 aaKnown RBP eCLIP23.95■■□□□ 1.42
ABCD4-226ENST00000556971 GRIN2AQ12879 1464 aa23.94■■□□□ 1.42
ABCD4-226ENST00000556971 NUP160Q12769 1436 aa23.92■■□□□ 1.42
ABCD4-226ENST00000556971 ADCY10Q96PN6 1610 aa23.86■■□□□ 1.41
ABCD4-226ENST00000556971 PRG4Q92954 1404 aaPredicted RBP23.84■■□□□ 1.41
ABCD4-226ENST00000556971 SPATA31D1Q6ZQQ2 1576 aa23.84■■□□□ 1.41
ABCD4-226ENST00000556971 PPRC1Q5VV67 1664 aaKnown RBP23.81■■□□□ 1.4
ABCD4-226ENST00000556971 TOP2BQ02880 1626 aa23.81■■□□□ 1.4
ABCD4-226ENST00000556971 ABCA5Q8WWZ7 1642 aa23.78■■□□□ 1.4
ABCD4-226ENST00000556971 ADAMTS12P58397 1594 aa23.76■■□□□ 1.39
ABCD4-226ENST00000556971 COL17A1Q9UMD9 1497 aaPredicted RBP23.75■■□□□ 1.39
ABCD4-226ENST00000556971 CUX1P39880 1505 aa23.74■■□□□ 1.39
ABCD4-226ENST00000556971 ABCA10Q8WWZ4 1543 aa23.61■■□□□ 1.37
ABCD4-226ENST00000556971 JPH4Q96JJ6 628 aa23.61■■□□□ 1.37
ABCD4-226ENST00000556971 CERKQ8TCT0 537 aa23.6■■□□□ 1.37
ABCD4-226ENST00000556971 GLI2P10070 1586 aa23.55■■□□□ 1.36
ABCD4-226ENST00000556971 FHAD1B1AJZ9 1412 aa23.53■■□□□ 1.36
ABCD4-226ENST00000556971 PCF11O94913 1555 aaKnown RBP23.52■■□□□ 1.36
ABCD4-226ENST00000556971 KIF21BO75037 1637 aa23.48■■□□□ 1.35
ABCD4-226ENST00000556971 RUSC2Q8N2Y8 1516 aa23.47■■□□□ 1.35
ABCD4-226ENST00000556971 ASXL2Q76L83 1435 aa23.46■■□□□ 1.35
ABCD4-226ENST00000556971 PTPRMP28827 1452 aa23.45■■□□□ 1.34
ABCD4-226ENST00000556971 TEX14Q8IWB6 1497 aa23.43■■□□□ 1.34
ABCD4-226ENST00000556971 MAP3K4Q9Y6R4 1608 aa23.42■■□□□ 1.34
ABCD4-226ENST00000556971 PLB1Q6P1J6 1458 aa23.41■■□□□ 1.34
ABCD4-226ENST00000556971 ABCC2Q92887 1545 aa23.34■■□□□ 1.33
ABCD4-226ENST00000556971 ADAMTSL3P82987 1691 aa23.32■■□□□ 1.32
ABCD4-226ENST00000556971 CUL7Q14999 1698 aa23.3■■□□□ 1.32
ABCD4-226ENST00000556971 HSPA2P54652 639 aa23.3■■□□□ 1.32
ABCD4-226ENST00000556971 EPRSP07814 1512 aaKnown RBP23.29■■□□□ 1.32
ABCD4-226ENST00000556971 ERICH3Q5RHP9 1530 aa23.27■■□□□ 1.32
ABCD4-226ENST00000556971 TTBK1Q5TCY1 1321 aaPredicted RBP23.25■■□□□ 1.31
ABCD4-226ENST00000556971 KIAA0586Q9BVV6 1533 aa23.21■■□□□ 1.31
ABCD4-226ENST00000556971 PTPRGP23470 1445 aa23.2■■□□□ 1.3
ABCD4-226ENST00000556971 MADDQ8WXG6 1647 aa23.17■■□□□ 1.3
ABCD4-226ENST00000556971 WRNQ14191 1432 aaPredicted RBP eCLIP23.15■■□□□ 1.3
ABCD4-226ENST00000556971 BCORL1Q5H9F3 1711 aa23.09■■□□□ 1.29
ABCD4-226ENST00000556971 RIMS1Q86UR5 1692 aaKnown RBP23.06■■□□□ 1.28
ABCD4-226ENST00000556971 UHRF1BP1LA0JNW5 1464 aa23.05■■□□□ 1.28
ABCD4-226ENST00000556971 TNIKQ9UKE5 1360 aa23.01■■□□□ 1.27
ABCD4-226ENST00000556971 ZCCHC11Q5TAX3 1644 aaKnown RBP23■■□□□ 1.27
ABCD4-226ENST00000556971 MAGI3Q5TCQ9 1506 aa23■■□□□ 1.27
ABCD4-226ENST00000556971 PLPPR3Q6T4P5 718 aa23■■□□□ 1.27
ABCD4-226ENST00000556971 KDM5BQ9UGL1 1544 aa22.98■■□□□ 1.27
ABCD4-226ENST00000556971 UACAQ9BZF9 1416 aa22.98■■□□□ 1.27
ABCD4-226ENST00000556971 CD109Q6YHK3 1445 aa22.96■■□□□ 1.27
ABCD4-226ENST00000556971 CFAP43Q8NDM7 1665 aa22.93■■□□□ 1.26
ABCD4-226ENST00000556971 WDR7Q9Y4E6 1490 aa22.93■■□□□ 1.26
ABCD4-226ENST00000556971 ARID4BQ4LE39 1312 aaPredicted RBP22.93■■□□□ 1.26
ABCD4-226ENST00000556971 CARMIL2Q6F5E8 1435 aa22.88■■□□□ 1.25
ABCD4-226ENST00000556971 ARAP3Q8WWN8 1544 aa22.87■■□□□ 1.25
ABCD4-226ENST00000556971 BIVM-ERCC5R4GMW8 1640 aa22.86■■□□□ 1.25
ABCD4-226ENST00000556971 MED1Q15648 1581 aaPredicted RBP22.85■■□□□ 1.25
ABCD4-226ENST00000556971 STRCQ7RTU9 1775 aa22.82■■□□□ 1.24
ABCD4-226ENST00000556971 YEATS2Q9ULM3 1422 aa22.82■■□□□ 1.24
ABCD4-226ENST00000556971 DMRT2Q9Y5R5 561 aa22.76■■□□□ 1.23
ABCD4-226ENST00000556971 IQSEC2Q5JU85 1478 aa22.76■■□□□ 1.23
ABCD4-226ENST00000556971 LTBP4Q8N2S1 1624 aa22.75■■□□□ 1.23
ABCD4-226ENST00000556971 KCNH8Q96L42 1107 aa22.75■■□□□ 1.23
ABCD4-226ENST00000556971 RAPGEF3O95398 923 aa22.73■■□□□ 1.23
ABCD4-226ENST00000556971 PREX1Q8TCU6 1659 aa22.71■■□□□ 1.23
ABCD4-226ENST00000556971 FRMPD1Q5SYB0 1578 aa22.68■■□□□ 1.22
ABCD4-226ENST00000556971 ARHGEF40Q8TER5 1519 aa22.67■■□□□ 1.22
ABCD4-226ENST00000556971 DISP1Q96F81 1524 aa22.67■■□□□ 1.22
ABCD4-226ENST00000556971 IQGAP2Q13576 1575 aa22.64■■□□□ 1.22
ABCD4-226ENST00000556971 UBAP1LF5GYI3 381 aa22.63■■□□□ 1.21
ABCD4-226ENST00000556971 PHF23Q9BUL5 403 aaPredicted RBP22.62■■□□□ 1.21
ABCD4-226ENST00000556971 FER1L4A9Z1Z3 1794 aa22.62■■□□□ 1.21
ABCD4-226ENST00000556971 PTPRTO14522 1441 aa22.62■■□□□ 1.21
ABCD4-226ENST00000556971 TTC37Q6PGP7 1564 aa22.62■■□□□ 1.21
ABCD4-226ENST00000556971 POGZQ7Z3K3 1410 aa22.57■■□□□ 1.2
ABCD4-226ENST00000556971 SIGLEC1Q9BZZ2 1709 aa22.56■■□□□ 1.2
ABCD4-226ENST00000556971 FANCAO15360 1455 aa22.55■■□□□ 1.2
ABCD4-226ENST00000556971 PHLDB1Q86UU1 1377 aa22.54■■□□□ 1.2
ABCD4-226ENST00000556971 IGF1RP08069 1367 aa22.52■■□□□ 1.2
ABCD4-226ENST00000556971 MLECQ14165 292 aa22.52■■□□□ 1.2
ABCD4-226ENST00000556971 HSPA1LP34931 641 aa22.51■■□□□ 1.19
ABCD4-226ENST00000556971 UHRF1BP1Q6BDS2 1440 aa22.49■■□□□ 1.19
ABCD4-226ENST00000556971 KIAA0556O60303 1618 aa22.49■■□□□ 1.19
ABCD4-226ENST00000556971 NEO1Q92859 1461 aa22.46■■□□□ 1.19
ABCD4-226ENST00000556971 CEBPAP49715 358 aaPredicted RBP22.44■■□□□ 1.18
ABCD4-226ENST00000556971 ABCA9Q8IUA7 1624 aa22.42■■□□□ 1.18
ABCD4-226ENST00000556971 AKNAQ7Z591 1439 aa22.42■■□□□ 1.18
ABCD4-226ENST00000556971 SCAF1Q9H7N4 1312 aaKnown RBP22.42■■□□□ 1.18
ABCD4-226ENST00000556971 UGGT2Q9NYU1 1516 aa22.41■■□□□ 1.18
ABCD4-226ENST00000556971 RICTORQ6R327 1708 aa22.39■■□□□ 1.17
ABCD4-226ENST00000556971 ABCA8O94911 1581 aa22.37■■□□□ 1.17
ABCD4-226ENST00000556971 ZNF335Q9H4Z2 1342 aaPredicted RBP22.36■■□□□ 1.17
ABCD4-226ENST00000556971 ARHGEF12Q9NZN5 1544 aa22.36■■□□□ 1.17
ABCD4-226ENST00000556971 ZFYVE16Q7Z3T8 1539 aa22.35■■□□□ 1.17
ABCD4-226ENST00000556971 CARMIL1Q5VZK9 1371 aa22.35■■□□□ 1.17
ABCD4-226ENST00000556971 SETD1BQ9UPS6 1966 aaKnown RBP22.33■■□□□ 1.17
ABCD4-226ENST00000556971 PIP4K2BP78356 416 aa22.33■■□□□ 1.17
ABCD4-226ENST00000556971 DENND4BO75064 1496 aaPredicted RBP22.33■■□□□ 1.16
ABCD4-226ENST00000556971 NCOA1Q15788 1441 aa22.32■■□□□ 1.16
ABCD4-226ENST00000556971 KIF27Q86VH2 1401 aa22.31■■□□□ 1.16
ABCD4-226ENST00000556971 EFCAB5A4FU69 1503 aa22.3■■□□□ 1.16
ABCD4-226ENST00000556971 ARID3CA6NKF2 412 aa22.29■■□□□ 1.16
ABCD4-226ENST00000556971 ZMYM4Q5VZL5 1548 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms