RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, human

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCFD1-222	ENST00000556768	BIVM-ERCC5	R4GMW8	1640 aa		12.57	□□□□□ -0.4
SCFD1-222	ENST00000556768	ABCA5	Q8WWZ7	1642 aa		12.56	□□□□□ -0.4
SCFD1-222	ENST00000556768	TRH	P20396	242 aa	Predicted RBP	12.54	□□□□□ -0.4
SCFD1-222	ENST00000556768	GRIN2A	Q12879	1464 aa		12.54	□□□□□ -0.4
SCFD1-222	ENST00000556768	ERICH3	Q5RHP9	1530 aa		12.53	□□□□□ -0.4
SCFD1-222	ENST00000556768	KIF27	Q86VH2	1401 aa		12.52	□□□□□ -0.41
SCFD1-222	ENST00000556768	CLASP1	Q7Z460	1538 aa		12.52	□□□□□ -0.41
SCFD1-222	ENST00000556768	PBRM1	Q86U86	1689 aa		12.51	□□□□□ -0.41
SCFD1-222	ENST00000556768	ARAP1	Q96P48	1450 aa		12.51	□□□□□ -0.41
SCFD1-222	ENST00000556768	JPH4	Q96JJ6	628 aa		12.48	□□□□□ -0.41
SCFD1-222	ENST00000556768	IGF1R	P08069	1367 aa		12.48	□□□□□ -0.41
SCFD1-222	ENST00000556768	NUP160	Q12769	1436 aa		12.48	□□□□□ -0.41
SCFD1-222	ENST00000556768	ZBTB22	O15209	634 aa		12.47	□□□□□ -0.41
SCFD1-222	ENST00000556768	ADAMTS12	P58397	1594 aa		12.46	□□□□□ -0.41
SCFD1-222	ENST00000556768	CARMIL1	Q5VZK9	1371 aa		12.42	□□□□□ -0.42
SCFD1-222	ENST00000556768	CEP170	Q5SW79	1584 aa		12.41	□□□□□ -0.42
SCFD1-222	ENST00000556768	PRG4	Q92954	1404 aa	Predicted RBP	12.41	□□□□□ -0.42
SCFD1-222	ENST00000556768	NPM1	P06748	294 aa	Known RBP eCLIP	12.39	□□□□□ -0.43
SCFD1-222	ENST00000556768	KIAA0586	Q9BVV6	1533 aa		12.36	□□□□□ -0.43
SCFD1-222	ENST00000556768	CNKSR2	Q8WXI2	1034 aa		12.34	□□□□□ -0.43
SCFD1-222	ENST00000556768	CUL7	Q14999	1698 aa		12.33	□□□□□ -0.44
SCFD1-222	ENST00000556768	ERCC6L2	Q5T890	1561 aa		12.32	□□□□□ -0.44
SCFD1-222	ENST00000556768	SHROOM2	Q13796	1616 aa		12.31	□□□□□ -0.44
SCFD1-222	ENST00000556768	CARMIL2	Q6F5E8	1435 aa		12.31	□□□□□ -0.44
SCFD1-222	ENST00000556768	TTBK1	Q5TCY1	1321 aa	Predicted RBP	12.3	□□□□□ -0.44
SCFD1-222	ENST00000556768	RAPGEF2	Q9Y4G8	1499 aa		12.29	□□□□□ -0.44
SCFD1-222	ENST00000556768	RUSC2	Q8N2Y8	1516 aa		12.28	□□□□□ -0.44
SCFD1-222	ENST00000556768	PTPRG	P23470	1445 aa		12.28	□□□□□ -0.44
SCFD1-222	ENST00000556768	FAM9A	Q8IZU1	332 aa	Predicted RBP	12.27	□□□□□ -0.45
SCFD1-222	ENST00000556768	TNIK	Q9UKE5	1360 aa		12.24	□□□□□ -0.45
SCFD1-222	ENST00000556768	FAM69C	Q0P6D2	419 aa		12.23	□□□□□ -0.45
SCFD1-222	ENST00000556768	IQGAP2	Q13576	1575 aa		12.2	□□□□□ -0.46
SCFD1-222	ENST00000556768	SLC24A1	O60721	1099 aa		12.19	□□□□□ -0.46
SCFD1-222	ENST00000556768	SCAF1	Q9H7N4	1312 aa	Known RBP	12.19	□□□□□ -0.46
SCFD1-222	ENST00000556768	FOXD4L1	Q9NU39	408 aa		12.17	□□□□□ -0.46
SCFD1-222	ENST00000556768	PRX	Q9BXM0	1461 aa		12.16	□□□□□ -0.46
SCFD1-222	ENST00000556768	EEA1	Q15075	1411 aa		12.16	□□□□□ -0.46
SCFD1-222	ENST00000556768	UACA	Q9BZF9	1416 aa		12.15	□□□□□ -0.47
SCFD1-222	ENST00000556768	GOLGA3	Q08378	1498 aa		12.14	□□□□□ -0.47
SCFD1-222	ENST00000556768	ABCC10	Q5T3U5	1492 aa		12.14	□□□□□ -0.47
SCFD1-222	ENST00000556768	UGGT2	Q9NYU1	1516 aa		12.14	□□□□□ -0.47
SCFD1-222	ENST00000556768	DISP1	Q96F81	1524 aa		12.13	□□□□□ -0.47
SCFD1-222	ENST00000556768	MAPKBP1	O60336	1514 aa		12.13	□□□□□ -0.47
SCFD1-222	ENST00000556768	ABCC2	Q92887	1545 aa		12.12	□□□□□ -0.47
SCFD1-222	ENST00000556768	ADCY10	Q96PN6	1610 aa		12.11	□□□□□ -0.47
SCFD1-222	ENST00000556768	UHRF1BP1L	A0JNW5	1464 aa		12.1	□□□□□ -0.47
SCFD1-222	ENST00000556768	PLB1	Q6P1J6	1458 aa		12.1	□□□□□ -0.47
SCFD1-222	ENST00000556768	P3H3	Q8IVL6	736 aa		12.09	□□□□□ -0.47
SCFD1-222	ENST00000556768	RTN4	Q9NQC3	1192 aa	Known RBP	12.09	□□□□□ -0.47
SCFD1-222	ENST00000556768	RANGAP1	P46060	587 aa	Predicted RBP	12.08	□□□□□ -0.48
SCFD1-222	ENST00000556768	ASXL2	Q76L83	1435 aa		12.08	□□□□□ -0.48
SCFD1-222	ENST00000556768	KIAA0556	O60303	1618 aa		12.06	□□□□□ -0.48
SCFD1-222	ENST00000556768	UBTF	P17480	764 aa	Known RBP	12.05	□□□□□ -0.48
SCFD1-222	ENST00000556768	AMER1	Q5JTC6	1135 aa	Predicted RBP	12.05	□□□□□ -0.48
SCFD1-222	ENST00000556768	KDM5B	Q9UGL1	1544 aa		12.04	□□□□□ -0.48
SCFD1-222	ENST00000556768	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	12.03	□□□□□ -0.48
SCFD1-222	ENST00000556768	HNRNPUL2	Q1KMD3	747 aa	Known RBP	12.03	□□□□□ -0.48
SCFD1-222	ENST00000556768	KCNH8	Q96L42	1107 aa		12.03	□□□□□ -0.48
SCFD1-222	ENST00000556768	DIP2B	Q9P265	1576 aa		12.02	□□□□□ -0.49
SCFD1-222	ENST00000556768	CTTNBP2	Q8WZ74	1663 aa		12	□□□□□ -0.49
SCFD1-222	ENST00000556768	ARID3C	A6NKF2	412 aa		12	□□□□□ -0.49
SCFD1-222	ENST00000556768	KIF13A	Q9H1H9	1805 aa		11.98	□□□□□ -0.49
SCFD1-222	ENST00000556768	WDR7	Q9Y4E6	1490 aa		11.98	□□□□□ -0.49
SCFD1-222	ENST00000556768	EPRS	P07814	1512 aa	Known RBP	11.97	□□□□□ -0.49
SCFD1-222	ENST00000556768	TEX14	Q8IWB6	1497 aa		11.95	□□□□□ -0.5
SCFD1-222	ENST00000556768	GLI2	P10070	1586 aa		11.95	□□□□□ -0.5
SCFD1-222	ENST00000556768	PLEKHD1	A6NEE1	506 aa		11.94	□□□□□ -0.5
SCFD1-222	ENST00000556768	CD109	Q6YHK3	1445 aa		11.94	□□□□□ -0.5
SCFD1-222	ENST00000556768	ABCA8	O94911	1581 aa		11.94	□□□□□ -0.5
SCFD1-222	ENST00000556768	ZCCHC11	Q5TAX3	1644 aa	Known RBP	11.93	□□□□□ -0.5
SCFD1-222	ENST00000556768	ATP1B4	Q9UN42	357 aa	Predicted RBP	11.93	□□□□□ -0.5
SCFD1-222	ENST00000556768	KDM6B	O15054	1643 aa		11.92	□□□□□ -0.5
SCFD1-222	ENST00000556768	ATP10B	O94823	1461 aa		11.92	□□□□□ -0.5
SCFD1-222	ENST00000556768	FHOD3	Q2V2M9	1422 aa		11.91	□□□□□ -0.5
SCFD1-222	ENST00000556768	MAPK8IP2	Q13387	824 aa	Predicted RBP	11.91	□□□□□ -0.5
SCFD1-222	ENST00000556768	KIF21B	O75037	1637 aa		11.91	□□□□□ -0.5
SCFD1-222	ENST00000556768	RNF216	Q9NWF9	866 aa	Predicted RBP	11.9	□□□□□ -0.5
SCFD1-222	ENST00000556768	SAMD9	Q5K651	1589 aa		11.89	□□□□□ -0.51
SCFD1-222	ENST00000556768	TSPOAP1	O95153	1857 aa		11.89	□□□□□ -0.51
SCFD1-222	ENST00000556768	CDK11A	Q9UQ88	783 aa	Predicted RBP	11.88	□□□□□ -0.51
SCFD1-222	ENST00000556768	EFCAB5	A4FU69	1503 aa		11.88	□□□□□ -0.51
SCFD1-222	ENST00000556768	FMN1	Q68DA7	1419 aa		11.86	□□□□□ -0.51
SCFD1-222	ENST00000556768	MAGI3	Q5TCQ9	1506 aa		11.86	□□□□□ -0.51
SCFD1-222	ENST00000556768	PHLDB1	Q86UU1	1377 aa		11.86	□□□□□ -0.51
SCFD1-222	ENST00000556768	RAPGEF6	Q8TEU7	1601 aa		11.85	□□□□□ -0.51
SCFD1-222	ENST00000556768	NUP153	P49790	1475 aa	Known RBP	11.84	□□□□□ -0.51
SCFD1-222	ENST00000556768	MSH5	O43196	834 aa		11.84	□□□□□ -0.51
SCFD1-222	ENST00000556768	MAP3K4	Q9Y6R4	1608 aa		11.84	□□□□□ -0.51
SCFD1-222	ENST00000556768	COL17A1	Q9UMD9	1497 aa	Predicted RBP	11.82	□□□□□ -0.52
SCFD1-222	ENST00000556768	KDM4F	A0A1W2PPD8	638 aa		11.81	□□□□□ -0.52
SCFD1-222	ENST00000556768	ARHGAP35	Q9NRY4	1499 aa		11.79	□□□□□ -0.52
SCFD1-222	ENST00000556768	CFAP43	Q8NDM7	1665 aa		11.79	□□□□□ -0.52
SCFD1-222	ENST00000556768	PPRC1	Q5VV67	1664 aa	Known RBP	11.78	□□□□□ -0.52
SCFD1-222	ENST00000556768	RAPGEF3	O95398	923 aa		11.78	□□□□□ -0.52
SCFD1-222	ENST00000556768	NEO1	Q92859	1461 aa		11.76	□□□□□ -0.53
SCFD1-222	ENST00000556768	ARAP3	Q8WWN8	1544 aa		11.76	□□□□□ -0.53
SCFD1-222	ENST00000556768	EFCAB2	Q5VUJ9	269 aa		11.74	□□□□□ -0.53
SCFD1-222	ENST00000556768	ABCA9	Q8IUA7	1624 aa		11.74	□□□□□ -0.53
SCFD1-222	ENST00000556768	CLIP1	P30622	1438 aa		11.74	□□□□□ -0.53
SCFD1-222	ENST00000556768	ARID4B	Q4LE39	1312 aa	Predicted RBP	11.73	□□□□□ -0.53

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