RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 NISCHQ9Y2I1 1504 aa17.72■□□□□ 0.43
SCFD1-222ENST00000556768 CHIC1Q5VXU3 224 aa17.44■□□□□ 0.38
SCFD1-222ENST00000556768 AEBP2Q6ZN18 517 aaPredicted RBP17.09■□□□□ 0.33
SCFD1-222ENST00000556768 CCDC180Q9P1Z9 1646 aa15.73■□□□□ 0.11
SCFD1-222ENST00000556768 ABCC9O60706 1549 aa15.69■□□□□ 0.1
SCFD1-222ENST00000556768 PHF23Q9BUL5 403 aaPredicted RBP15.45■□□□□ 0.06
SCFD1-222ENST00000556768 DCAF8L2P0C7V8 631 aa15.11■□□□□ 0.01
SCFD1-222ENST00000556768 RB1CC1Q8TDY2 1594 aa14.99□□□□□ -0.01
SCFD1-222ENST00000556768 NACADO15069 1562 aa14.93□□□□□ -0.02
SCFD1-222ENST00000556768 MYO15BQ96JP2 1530 aa14.78□□□□□ -0.04
SCFD1-222ENST00000556768 PABPN1Q86U42 306 aaKnown RBP eCLIP14.72□□□□□ -0.053e-6■■■■□ 24.8
SCFD1-222ENST00000556768 ZCCHC6Q5VYS8 1495 aaKnown RBP14.69□□□□□ -0.06
SCFD1-222ENST00000556768 DCAF1Q9Y4B6 1507 aa14.64□□□□□ -0.07
SCFD1-222ENST00000556768 DNAJC5BQ9UF47 199 aa14.58□□□□□ -0.08
SCFD1-222ENST00000556768 PLPPR3Q6T4P5 718 aa14.5□□□□□ -0.09
SCFD1-222ENST00000556768 BICRAQ9NZM4 1560 aa14.44□□□□□ -0.1
SCFD1-222ENST00000556768 UNC13AQ9UPW8 1703 aa14.43□□□□□ -0.1
SCFD1-222ENST00000556768 SCRIBQ14160 1630 aa14.39□□□□□ -0.11
SCFD1-222ENST00000556768 SHROOM4Q9ULL8 1493 aa14.38□□□□□ -0.11
SCFD1-222ENST00000556768 SENP3Q9H4L4 574 aaPredicted RBP14.32□□□□□ -0.12
SCFD1-222ENST00000556768 EIF4G1Q04637 1599 aaKnown RBP14.14□□□□□ -0.15
SCFD1-222ENST00000556768 CECR2Q9BXF3 1484 aa14.14□□□□□ -0.15
SCFD1-222ENST00000556768 CC2D2AQ9P2K1 1620 aa14.12□□□□□ -0.15
SCFD1-222ENST00000556768 NCAPD3P42695 1498 aa13.82□□□□□ -0.2
SCFD1-222ENST00000556768 ATAD2BQ9ULI0 1458 aa13.78□□□□□ -0.2
SCFD1-222ENST00000556768 BAZ1AQ9NRL2 1556 aaPredicted RBP13.76□□□□□ -0.21
SCFD1-222ENST00000556768 SMARCA2P51531 1590 aa13.75□□□□□ -0.21
SCFD1-222ENST00000556768 SMARCA4P51532 1647 aa13.73□□□□□ -0.21
SCFD1-222ENST00000556768 BAZ1BQ9UIG0 1483 aaKnown RBP13.68□□□□□ -0.22
SCFD1-222ENST00000556768 HMGXB3Q12766 1538 aa13.67□□□□□ -0.22
SCFD1-222ENST00000556768 MROH2BQ7Z745 1585 aa13.63□□□□□ -0.23
SCFD1-222ENST00000556768 ERCC6Q03468 1493 aa13.61□□□□□ -0.23
SCFD1-222ENST00000556768 PEG3Q9GZU2 1588 aa13.6□□□□□ -0.23
SCFD1-222ENST00000556768 ADRA2BP18089 450 aa13.59□□□□□ -0.23
SCFD1-222ENST00000556768 EHMT2Q96KQ7 1210 aa13.51□□□□□ -0.25
SCFD1-222ENST00000556768 KCNA4P22459 653 aa13.5□□□□□ -0.25
SCFD1-222ENST00000556768 NESP48681 1621 aa13.48□□□□□ -0.25
SCFD1-222ENST00000556768 RSF1Q96T23 1441 aaPredicted RBP13.47□□□□□ -0.25
SCFD1-222ENST00000556768 CUX2O14529 1486 aa13.47□□□□□ -0.25
SCFD1-222ENST00000556768 PDS5BQ9NTI5 1447 aa13.46□□□□□ -0.25
SCFD1-222ENST00000556768 CADPSQ9ULU8 1353 aa13.45□□□□□ -0.26
SCFD1-222ENST00000556768 LAMC3Q9Y6N6 1575 aa13.43□□□□□ -0.26
SCFD1-222ENST00000556768 WIZO95785 1651 aa13.42□□□□□ -0.26
SCFD1-222ENST00000556768 PPP6R1Q9UPN7 881 aa13.38□□□□□ -0.27
SCFD1-222ENST00000556768 DNAJC5Q9H3Z4 198 aa13.34□□□□□ -0.27
SCFD1-222ENST00000556768 TOP2AP11388 1531 aaKnown RBP13.32□□□□□ -0.28
SCFD1-222ENST00000556768 POTEDQ86YR6 584 aa13.29□□□□□ -0.28
SCFD1-222ENST00000556768 CFTRP13569 1480 aa13.28□□□□□ -0.28
SCFD1-222ENST00000556768 FANCD2Q9BXW9 1451 aa13.26□□□□□ -0.29
SCFD1-222ENST00000556768 CEP164Q9UPV0 1460 aa13.26□□□□□ -0.29
SCFD1-222ENST00000556768 MRC2Q9UBG0 1479 aa13.25□□□□□ -0.29
SCFD1-222ENST00000556768 THOC2Q8NI27 1593 aaKnown RBP13.23□□□□□ -0.29
SCFD1-222ENST00000556768 FOXD1Q16676 465 aa13.23□□□□□ -0.29
SCFD1-222ENST00000556768 CCDC88BA6NC98 1476 aa13.21□□□□□ -0.29
SCFD1-222ENST00000556768 KIF21AQ7Z4S6 1674 aa13.21□□□□□ -0.29
SCFD1-222ENST00000556768 WDR62O43379 1518 aa13.16□□□□□ -0.3
SCFD1-222ENST00000556768 SUPT5HO00267 1087 aaKnown RBP13.13□□□□□ -0.31
SCFD1-222ENST00000556768 URB2Q14146 1524 aaKnown RBP13.07□□□□□ -0.32
SCFD1-222ENST00000556768 ABCC8Q09428 1581 aa13.05□□□□□ -0.32
SCFD1-222ENST00000556768 CSRNP3Q8WYN3 585 aa13.04□□□□□ -0.32
SCFD1-222ENST00000556768 OSCARQ8IYS5 282 aa13.02□□□□□ -0.33
SCFD1-222ENST00000556768 IFT140Q96RY7 1462 aa12.99□□□□□ -0.33
SCFD1-222ENST00000556768 TOPBP1Q92547 1522 aa12.98□□□□□ -0.33
SCFD1-222ENST00000556768 SLC4A1APQ9BWU0 796 aaKnown RBP12.97□□□□□ -0.33
SCFD1-222ENST00000556768 PRDM2Q13029 1718 aa12.95□□□□□ -0.34
SCFD1-222ENST00000556768 DNMBPQ6XZF7 1577 aa12.93□□□□□ -0.34
SCFD1-222ENST00000556768 ZNF608Q9ULD9 1512 aaPredicted RBP12.9□□□□□ -0.34
SCFD1-222ENST00000556768 SOGA1O94964 1423 aa12.9□□□□□ -0.35
SCFD1-222ENST00000556768 FBLN2P98095 1184 aa12.88□□□□□ -0.35
SCFD1-222ENST00000556768 PPP4R3CPQ6ZMV5 832 aa12.88□□□□□ -0.35
SCFD1-222ENST00000556768 POLA1P09884 1462 aaPredicted RBP12.87□□□□□ -0.35
SCFD1-222ENST00000556768 TRIM41Q8WV44 630 aa12.87□□□□□ -0.35
SCFD1-222ENST00000556768 AQRO60306 1485 aaKnown RBP eCLIP12.86□□□□□ -0.352e-9■■■■■ 39.4
SCFD1-222ENST00000556768 TDRD9Q8NDG6 1382 aaKnown RBP12.84□□□□□ -0.35
SCFD1-222ENST00000556768 RAD54L2Q9Y4B4 1467 aa12.83□□□□□ -0.36
SCFD1-222ENST00000556768 FGD5Q6ZNL6 1462 aa12.81□□□□□ -0.36
SCFD1-222ENST00000556768 CHMP7Q8WUX9 453 aaPredicted RBP12.81□□□□□ -0.36
SCFD1-222ENST00000556768 CUX1P39880 1505 aa12.79□□□□□ -0.36
SCFD1-222ENST00000556768 TARBP1Q13395 1621 aaKnown RBP12.78□□□□□ -0.36
SCFD1-222ENST00000556768 EIF4G3O43432 1585 aaKnown RBP12.78□□□□□ -0.36
SCFD1-222ENST00000556768 WRNQ14191 1432 aaPredicted RBP eCLIP12.76□□□□□ -0.37
SCFD1-222ENST00000556768 NCBP3Q53F19 620 aaKnown RBP12.74□□□□□ -0.37
SCFD1-222ENST00000556768 GRIN2BQ13224 1484 aa12.73□□□□□ -0.37
SCFD1-222ENST00000556768 WDR97A6NE52 1622 aa12.71□□□□□ -0.37
SCFD1-222ENST00000556768 GAPVD1Q14C86 1478 aa12.71□□□□□ -0.38
SCFD1-222ENST00000556768 SNAPC4Q5SXM2 1469 aa12.7□□□□□ -0.38
SCFD1-222ENST00000556768 MAGI1Q96QZ7 1491 aaPredicted RBP12.7□□□□□ -0.38
SCFD1-222ENST00000556768 CYB5RLQ6IPT4 315 aa12.69□□□□□ -0.38
SCFD1-222ENST00000556768 ABCA10Q8WWZ4 1543 aa12.69□□□□□ -0.38
SCFD1-222ENST00000556768 SYNJ2O15056 1496 aa12.66□□□□□ -0.38
SCFD1-222ENST00000556768 ARHGEF11O15085 1522 aa12.64□□□□□ -0.39
SCFD1-222ENST00000556768 PIAS4Q8N2W9 510 aaPredicted RBP12.64□□□□□ -0.39
SCFD1-222ENST00000556768 TOP2BQ02880 1626 aa12.63□□□□□ -0.39
SCFD1-222ENST00000556768 NPM3O75607 178 aaKnown RBP12.6□□□□□ -0.39
SCFD1-222ENST00000556768 RIMBP3CA6NJZ7 1639 aa12.6□□□□□ -0.39
SCFD1-222ENST00000556768 RIMBP3BA6NNM3 1639 aa12.6□□□□□ -0.39
SCFD1-222ENST00000556768 RIMBP3Q9UFD9 1639 aa12.6□□□□□ -0.39
SCFD1-222ENST00000556768 SYNJ1O43426 1573 aa12.6□□□□□ -0.39
SCFD1-222ENST00000556768 CHD1O14646 1710 aa12.59□□□□□ -0.39
SCFD1-222ENST00000556768 FHAD1B1AJZ9 1412 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms