RNA–Protein interactions for RNA: ENST00000555462.5

PPP4R3A-208, Transcript of protein phosphatase 4 regulatory subunit 3A, humanhuman

TSL 1 (best) BASIC

Gene PPP4R3A, Length 3,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R3A-208ENST00000555462 RRBP1Q9P2E9 1410 aaKnown RBP24.11■■□□□ 1.45
PPP4R3A-208ENST00000555462 WDR97A6NE52 1622 aa24.11■■□□□ 1.45
PPP4R3A-208ENST00000555462 RBM19Q9Y4C8 960 aaKnown RBP24.11■■□□□ 1.45
PPP4R3A-208ENST00000555462 TOP2BQ02880 1626 aa24.09■■□□□ 1.45
PPP4R3A-208ENST00000555462 CUX1P39880 1505 aa24.08■■□□□ 1.45
PPP4R3A-208ENST00000555462 CHIC2Q9UKJ5 165 aa24.08■■□□□ 1.44
PPP4R3A-208ENST00000555462 HNRNPUQ00839 825 aaKnown RBP eCLIP24.07■■□□□ 1.44
PPP4R3A-208ENST00000555462 CUX2O14529 1486 aa24.07■■□□□ 1.44
PPP4R3A-208ENST00000555462 SETD5Q9C0A6 1442 aa24.06■■□□□ 1.44
PPP4R3A-208ENST00000555462 PPP1R15AO75807 674 aaPredicted RBP24.04■■□□□ 1.44
PPP4R3A-208ENST00000555462 MAPKBP1O60336 1514 aa24.02■■□□□ 1.44
PPP4R3A-208ENST00000555462 IGF1RP08069 1367 aa23.98■■□□□ 1.43
PPP4R3A-208ENST00000555462 CARMIL1Q5VZK9 1371 aa23.97■■□□□ 1.43
PPP4R3A-208ENST00000555462 RRP7BPQ9NSQ0 103 aa23.97■■□□□ 1.43
PPP4R3A-208ENST00000555462 PEG3Q9GZU2 1588 aa23.96■■□□□ 1.43
PPP4R3A-208ENST00000555462 FHOD3Q2V2M9 1422 aa23.95■■□□□ 1.42
PPP4R3A-208ENST00000555462 FOXD1Q16676 465 aa23.95■■□□□ 1.42
PPP4R3A-208ENST00000555462 POLR3GLQ9BT43 218 aa23.94■■□□□ 1.42
PPP4R3A-208ENST00000555462 TONSLQ96HA7 1378 aa23.94■■□□□ 1.42
PPP4R3A-208ENST00000555462 BCL11AQ9H165 835 aa23.91■■□□□ 1.42
PPP4R3A-208ENST00000555462 FAM9BQ8IZU0 186 aa23.91■■□□□ 1.42
PPP4R3A-208ENST00000555462 ERICH3Q5RHP9 1530 aa23.9■■□□□ 1.42
PPP4R3A-208ENST00000555462 CCDC184Q52MB2 194 aa23.89■■□□□ 1.41
PPP4R3A-208ENST00000555462 MSH5O43196 834 aa23.86■■□□□ 1.41
PPP4R3A-208ENST00000555462 LRRC9Q6ZRR7 1453 aa23.83■■□□□ 1.41
PPP4R3A-208ENST00000555462 ERICH6Q7L0X2 663 aa23.79■■□□□ 1.4
PPP4R3A-208ENST00000555462 BIVM-ERCC5R4GMW8 1640 aa23.78■■□□□ 1.4
PPP4R3A-208ENST00000555462 B4GALNT3Q6L9W6 998 aa23.78■■□□□ 1.4
PPP4R3A-208ENST00000555462 TIAM1Q13009 1591 aa23.75■■□□□ 1.39
PPP4R3A-208ENST00000555462 HSPA5P11021 654 aaKnown RBP23.74■■□□□ 1.39
PPP4R3A-208ENST00000555462 MTUS2Q5JR59 1369 aa23.73■■□□□ 1.39
PPP4R3A-208ENST00000555462 ZNF326Q5BKZ1 582 aaKnown RBP23.73■■□□□ 1.39
PPP4R3A-208ENST00000555462 RAD54L2Q9Y4B4 1467 aa23.73■■□□□ 1.39
PPP4R3A-208ENST00000555462 CDK11AQ9UQ88 783 aaPredicted RBP23.71■■□□□ 1.39
PPP4R3A-208ENST00000555462 CCER2I3L3R5 266 aa23.71■■□□□ 1.39
PPP4R3A-208ENST00000555462 FGD5Q6ZNL6 1462 aa23.7■■□□□ 1.39
PPP4R3A-208ENST00000555462 CFTRP13569 1480 aa23.67■■□□□ 1.38
PPP4R3A-208ENST00000555462 PTPRKQ15262 1439 aa23.66■■□□□ 1.38
PPP4R3A-208ENST00000555462 WASHC2AQ641Q2 1341 aa23.66■■□□□ 1.38
PPP4R3A-208ENST00000555462 C11orf95C9JLR9 678 aaPredicted RBP23.65■■□□□ 1.38
PPP4R3A-208ENST00000555462 MRS2Q9HD23 443 aa23.64■■□□□ 1.37
PPP4R3A-208ENST00000555462 PCF11O94913 1555 aaKnown RBP23.62■■□□□ 1.37
PPP4R3A-208ENST00000555462 NCAPD3P42695 1498 aa23.61■■□□□ 1.37
PPP4R3A-208ENST00000555462 AQRO60306 1485 aaKnown RBP eCLIP23.61■■□□□ 1.378e-8■■■■□ 23.2
PPP4R3A-208ENST00000555462 NBR1Q14596 966 aa23.6■■□□□ 1.37
PPP4R3A-208ENST00000555462 TDRD9Q8NDG6 1382 aaKnown RBP23.6■■□□□ 1.37
PPP4R3A-208ENST00000555462 FHAD1B1AJZ9 1412 aa23.59■■□□□ 1.37
PPP4R3A-208ENST00000555462 CCDC18Q5T9S5 1454 aa23.58■■□□□ 1.36
PPP4R3A-208ENST00000555462 L3MBTL2Q969R5 705 aa23.56■■□□□ 1.36
PPP4R3A-208ENST00000555462 SALL2Q9Y467 1007 aaPredicted RBP23.56■■□□□ 1.36
PPP4R3A-208ENST00000555462 CADPSQ9ULU8 1353 aa23.55■■□□□ 1.36
PPP4R3A-208ENST00000555462 EIF4G2P78344 907 aaKnown RBP eCLIP23.53■■□□□ 1.36
PPP4R3A-208ENST00000555462 FGD6Q6ZV73 1430 aa23.52■■□□□ 1.36
PPP4R3A-208ENST00000555462 TIMELESSQ9UNS1 1208 aa23.5■■□□□ 1.35
PPP4R3A-208ENST00000555462 DNAJC5BQ9UF47 199 aa23.49■■□□□ 1.35
PPP4R3A-208ENST00000555462 NESP48681 1621 aa23.47■■□□□ 1.35
PPP4R3A-208ENST00000555462 NBPF8Q3BBV2 869 aa23.44■■□□□ 1.34
PPP4R3A-208ENST00000555462 MPHOSPH9Q99550 1183 aa23.44■■□□□ 1.34
PPP4R3A-208ENST00000555462 ZNF777Q9ULD5 760 aaPredicted RBP23.42■■□□□ 1.34
PPP4R3A-208ENST00000555462 ZNF644Q9H582 1327 aaPredicted RBP23.42■■□□□ 1.34
PPP4R3A-208ENST00000555462 PRKRIP1Q9H875 184 aaPredicted RBP23.41■■□□□ 1.34
PPP4R3A-208ENST00000555462 NAIPQ13075 1403 aa23.4■■□□□ 1.34
PPP4R3A-208ENST00000555462 PPP4R2Q9NY27 417 aa23.39■■□□□ 1.33
PPP4R3A-208ENST00000555462 FANCD2Q9BXW9 1451 aa23.38■■□□□ 1.33
PPP4R3A-208ENST00000555462 UACAQ9BZF9 1416 aa23.38■■□□□ 1.33
PPP4R3A-208ENST00000555462 PAK3O75914 559 aaPredicted RBP23.37■■□□□ 1.33
PPP4R3A-208ENST00000555462 HMGXB3Q12766 1538 aa23.37■■□□□ 1.33
PPP4R3A-208ENST00000555462 NPM2Q86SE8 214 aaKnown RBP23.36■■□□□ 1.33
PPP4R3A-208ENST00000555462 SLC4A1APQ9BWU0 796 aaKnown RBP23.36■■□□□ 1.33
PPP4R3A-208ENST00000555462 CASKIN1Q8WXD9 1431 aa23.35■■□□□ 1.33
PPP4R3A-208ENST00000555462 NCOA2Q15596 1464 aa23.34■■□□□ 1.33
PPP4R3A-208ENST00000555462 KDM2AQ9Y2K7 1162 aa23.32■■□□□ 1.32
PPP4R3A-208ENST00000555462 HFM1A2PYH4 1435 aa23.31■■□□□ 1.32
PPP4R3A-208ENST00000555462 AKNAQ7Z591 1439 aa23.29■■□□□ 1.32
PPP4R3A-208ENST00000555462 POLA1P09884 1462 aaPredicted RBP23.29■■□□□ 1.32
PPP4R3A-208ENST00000555462 FMN1Q68DA7 1419 aa23.29■■□□□ 1.32
PPP4R3A-208ENST00000555462 MAP3K1Q13233 1512 aa23.28■■□□□ 1.32
PPP4R3A-208ENST00000555462 CCDC136Q96JN2 1154 aa23.27■■□□□ 1.32
PPP4R3A-208ENST00000555462 FYCO1Q9BQS8 1478 aa23.27■■□□□ 1.32
PPP4R3A-208ENST00000555462 KIF7Q2M1P5 1343 aa23.27■■□□□ 1.32
PPP4R3A-208ENST00000555462 DEKP35659 375 aaKnown RBP23.27■■□□□ 1.32
PPP4R3A-208ENST00000555462 MYOM3Q5VTT5 1437 aa23.25■■□□□ 1.31
PPP4R3A-208ENST00000555462 PTPN23Q9H3S7 1636 aa23.24■■□□□ 1.31
PPP4R3A-208ENST00000555462 FANCIQ9NVI1 1328 aa23.24■■□□□ 1.31
PPP4R3A-208ENST00000555462 CCDC7Q96M83 1385 aa23.23■■□□□ 1.31
PPP4R3A-208ENST00000555462 SKAP1Q86WV1 359 aa23.2■■□□□ 1.3
PPP4R3A-208ENST00000555462 CFAP43Q8NDM7 1665 aa23.2■■□□□ 1.3
PPP4R3A-208ENST00000555462 KDM6BO15054 1643 aa23.19■■□□□ 1.3
PPP4R3A-208ENST00000555462 CNTLNQ9NXG0 1405 aa23.18■■□□□ 1.3
PPP4R3A-208ENST00000555462 TOPBP1Q92547 1522 aa23.17■■□□□ 1.3
PPP4R3A-208ENST00000555462 TMC1Q8TDI8 760 aa23.15■■□□□ 1.3
PPP4R3A-208ENST00000555462 FBLN2P98095 1184 aa23.15■■□□□ 1.3
PPP4R3A-208ENST00000555462 NOP58Q9Y2X3 529 aaKnown RBP23.14■■□□□ 1.3
PPP4R3A-208ENST00000555462 SNAPC4Q5SXM2 1469 aa23.14■■□□□ 1.3
PPP4R3A-208ENST00000555462 KDM5BQ9UGL1 1544 aa23.13■■□□□ 1.29
PPP4R3A-208ENST00000555462 DENND4BO75064 1496 aaPredicted RBP23.13■■□□□ 1.29
PPP4R3A-208ENST00000555462 ZBED9Q6R2W3 1325 aa23.13■■□□□ 1.29
PPP4R3A-208ENST00000555462 CDK13Q14004 1512 aaKnown RBP23.12■■□□□ 1.29
PPP4R3A-208ENST00000555462 RTN4Q9NQC3 1192 aaKnown RBP23.12■■□□□ 1.29
PPP4R3A-208ENST00000555462 MAGI3Q5TCQ9 1506 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms