RNA–Protein interactions for RNA: ENST00000555462.5

PPP4R3A-208, Transcript of protein phosphatase 4 regulatory subunit 3A, humanhuman

TSL 1 (best) BASIC

Gene PPP4R3A, Length 3,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R3A-208ENST00000555462 NISCHQ9Y2I1 1504 aa33.01■■■□□ 2.87
PPP4R3A-208ENST00000555462 SHROOM4Q9ULL8 1493 aa30.08■■■□□ 2.41
PPP4R3A-208ENST00000555462 SUPT5HO00267 1087 aaKnown RBP29.75■■■□□ 2.35
PPP4R3A-208ENST00000555462 DCAF8L2P0C7V8 631 aa29.15■■■□□ 2.26
PPP4R3A-208ENST00000555462 PCGF6Q9BYE7 350 aa28.68■■■□□ 2.18
PPP4R3A-208ENST00000555462 PPARGC1BQ86YN6 1023 aaKnown RBP28.55■■■□□ 2.16
PPP4R3A-208ENST00000555462 CHIC1Q5VXU3 224 aa28.47■■■□□ 2.15
PPP4R3A-208ENST00000555462 MYO15BQ96JP2 1530 aa28.45■■■□□ 2.15
PPP4R3A-208ENST00000555462 HRCP23327 699 aa28.38■■■□□ 2.13
PPP4R3A-208ENST00000555462 LOC105371045A0A1W2PR82 267 aa28.28■■■□□ 2.12
PPP4R3A-208ENST00000555462 EHMT2Q96KQ7 1210 aa28.09■■■□□ 2.09
PPP4R3A-208ENST00000555462 ZCCHC6Q5VYS8 1495 aaKnown RBP27.86■■■□□ 2.05
PPP4R3A-208ENST00000555462 FAM9AQ8IZU1 332 aaPredicted RBP27.74■■■□□ 2.03
PPP4R3A-208ENST00000555462 TRIM26Q12899 539 aaPredicted RBP27.33■■□□□ 1.97
PPP4R3A-208ENST00000555462 TRIM41Q8WV44 630 aa27.2■■□□□ 1.95
PPP4R3A-208ENST00000555462 TTBK1Q5TCY1 1321 aaPredicted RBP27.17■■□□□ 1.94
PPP4R3A-208ENST00000555462 CCDC180Q9P1Z9 1646 aa27.09■■□□□ 1.93
PPP4R3A-208ENST00000555462 DCAF1Q9Y4B6 1507 aa27.07■■□□□ 1.92
PPP4R3A-208ENST00000555462 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.82■■□□□ 1.88
PPP4R3A-208ENST00000555462 SCAF1Q9H7N4 1312 aaKnown RBP26.79■■□□□ 1.88
PPP4R3A-208ENST00000555462 SCRIBQ14160 1630 aa26.65■■□□□ 1.86
PPP4R3A-208ENST00000555462 RSF1Q96T23 1441 aaPredicted RBP26.61■■□□□ 1.85
PPP4R3A-208ENST00000555462 ZEB1P37275 1124 aaPredicted RBP26.61■■□□□ 1.85
PPP4R3A-208ENST00000555462 CCER1Q8TC90 406 aaPredicted RBP26.6■■□□□ 1.85
PPP4R3A-208ENST00000555462 RB1CC1Q8TDY2 1594 aa26.47■■□□□ 1.83
PPP4R3A-208ENST00000555462 NEUROD1Q13562 356 aa26.35■■□□□ 1.81
PPP4R3A-208ENST00000555462 ABCC9O60706 1549 aa26.31■■□□□ 1.8
PPP4R3A-208ENST00000555462 CECR2Q9BXF3 1484 aa26.3■■□□□ 1.8
PPP4R3A-208ENST00000555462 YTHDC1Q96MU7 727 aaKnown RBP26.28■■□□□ 1.8
PPP4R3A-208ENST00000555462 RANGAP1P46060 587 aaPredicted RBP26.22■■□□□ 1.79
PPP4R3A-208ENST00000555462 GTF3C3Q9Y5Q9 886 aa26.19■■□□□ 1.78
PPP4R3A-208ENST00000555462 DIEXFQ68CQ4 756 aaKnown RBP26.18■■□□□ 1.78
PPP4R3A-208ENST00000555462 ACIN1Q9UKV3 1341 aaKnown RBP26.12■■□□□ 1.77
PPP4R3A-208ENST00000555462 UBTFP17480 764 aaKnown RBP26.07■■□□□ 1.76
PPP4R3A-208ENST00000555462 MROH2BQ7Z745 1585 aa26.02■■□□□ 1.76
PPP4R3A-208ENST00000555462 HNRNPUL2Q1KMD3 747 aaKnown RBP25.99■■□□□ 1.75
PPP4R3A-208ENST00000555462 PELP1Q8IZL8 1130 aaKnown RBP25.99■■□□□ 1.75
PPP4R3A-208ENST00000555462 WIZO95785 1651 aa25.9■■□□□ 1.74
PPP4R3A-208ENST00000555462 CENPBP07199 599 aaPredicted RBP25.84■■□□□ 1.73
PPP4R3A-208ENST00000555462 ABCC8Q09428 1581 aa25.81■■□□□ 1.72
PPP4R3A-208ENST00000555462 SOGA1O94964 1423 aa25.74■■□□□ 1.71
PPP4R3A-208ENST00000555462 CCDC88BA6NC98 1476 aa25.74■■□□□ 1.71
PPP4R3A-208ENST00000555462 PABPN1Q86U42 306 aaKnown RBP eCLIP25.71■■□□□ 1.71
PPP4R3A-208ENST00000555462 MIER1Q8N108 512 aa25.67■■□□□ 1.7
PPP4R3A-208ENST00000555462 RUSC2Q8N2Y8 1516 aa25.65■■□□□ 1.7
PPP4R3A-208ENST00000555462 CEP162Q5TB80 1403 aa25.64■■□□□ 1.69
PPP4R3A-208ENST00000555462 ZNF316A6NFI3 1004 aaPredicted RBP25.63■■□□□ 1.69
PPP4R3A-208ENST00000555462 CSRNP3Q8WYN3 585 aa25.6■■□□□ 1.69
PPP4R3A-208ENST00000555462 APLP2Q06481 763 aa25.41■■□□□ 1.66
PPP4R3A-208ENST00000555462 ITGAEP38570 1179 aa25.37■■□□□ 1.65
PPP4R3A-208ENST00000555462 TNIKQ9UKE5 1360 aa25.28■■□□□ 1.64
PPP4R3A-208ENST00000555462 NACADO15069 1562 aa25.26■■□□□ 1.63
PPP4R3A-208ENST00000555462 BAZ1AQ9NRL2 1556 aaPredicted RBP25.25■■□□□ 1.63
PPP4R3A-208ENST00000555462 WRNQ14191 1432 aaPredicted RBP eCLIP25.17■■□□□ 1.62
PPP4R3A-208ENST00000555462 EIF4G1Q04637 1599 aaKnown RBP25.09■■□□□ 1.61
PPP4R3A-208ENST00000555462 CLIP1P30622 1438 aa25.09■■□□□ 1.61
PPP4R3A-208ENST00000555462 SMARCA2P51531 1590 aa25.09■■□□□ 1.61
PPP4R3A-208ENST00000555462 BCANQ96GW7 911 aa25.06■■□□□ 1.6
PPP4R3A-208ENST00000555462 GOLGA3Q08378 1498 aa25.05■■□□□ 1.6
PPP4R3A-208ENST00000555462 TOP2AP11388 1531 aaKnown RBP25.05■■□□□ 1.6
PPP4R3A-208ENST00000555462 KCNH8Q96L42 1107 aa25.03■■□□□ 1.6
PPP4R3A-208ENST00000555462 KANK4Q5T7N3 995 aaPredicted RBP25.01■■□□□ 1.59
PPP4R3A-208ENST00000555462 SMARCA4P51532 1647 aa24.97■■□□□ 1.59
PPP4R3A-208ENST00000555462 HIRIP3Q9BW71 556 aaPredicted RBP24.94■■□□□ 1.58
PPP4R3A-208ENST00000555462 RAPGEF2Q9Y4G8 1499 aa24.93■■□□□ 1.58
PPP4R3A-208ENST00000555462 ATP1B4Q9UN42 357 aaPredicted RBP24.91■■□□□ 1.58
PPP4R3A-208ENST00000555462 SUPT16HQ9Y5B9 1047 aaKnown RBP24.85■■□□□ 1.57
PPP4R3A-208ENST00000555462 EEA1Q15075 1411 aa24.8■■□□□ 1.56
PPP4R3A-208ENST00000555462 CEP164Q9UPV0 1460 aa24.79■■□□□ 1.56
PPP4R3A-208ENST00000555462 VPS8Q8N3P4 1428 aa24.79■■□□□ 1.56
PPP4R3A-208ENST00000555462 SYNJ1O43426 1573 aa24.79■■□□□ 1.56
PPP4R3A-208ENST00000555462 P3H3Q8IVL6 736 aa24.75■■□□□ 1.55
PPP4R3A-208ENST00000555462 DHX57Q6P158 1386 aaKnown RBP24.71■■□□□ 1.55
PPP4R3A-208ENST00000555462 DDX10Q13206 875 aaKnown RBP24.71■■□□□ 1.55
PPP4R3A-208ENST00000555462 SIN3AQ96ST3 1273 aa24.67■■□□□ 1.54
PPP4R3A-208ENST00000555462 FAM50AQ14320 339 aaKnown RBP24.65■■□□□ 1.54
PPP4R3A-208ENST00000555462 TRIM52Q96A61 297 aa24.61■■□□□ 1.53
PPP4R3A-208ENST00000555462 KIF21BO75037 1637 aa24.6■■□□□ 1.53
PPP4R3A-208ENST00000555462 FKBP8Q14318 412 aa24.58■■□□□ 1.53
PPP4R3A-208ENST00000555462 TSHZ2Q9NRE2 1034 aa24.58■■□□□ 1.53
PPP4R3A-208ENST00000555462 UNC13AQ9UPW8 1703 aa24.56■■□□□ 1.52
PPP4R3A-208ENST00000555462 MYT1Q01538 1121 aa24.55■■□□□ 1.52
PPP4R3A-208ENST00000555462 BAZ1BQ9UIG0 1483 aaKnown RBP24.5■■□□□ 1.51
PPP4R3A-208ENST00000555462 ARAP1Q96P48 1450 aa24.44■■□□□ 1.5
PPP4R3A-208ENST00000555462 ATAD2BQ9ULI0 1458 aa24.43■■□□□ 1.5
PPP4R3A-208ENST00000555462 IRX6P78412 446 aaPredicted RBP24.42■■□□□ 1.5
PPP4R3A-208ENST00000555462 CNGB1Q14028 1251 aaPredicted RBP24.39■■□□□ 1.49
PPP4R3A-208ENST00000555462 CCNB3Q8WWL7 1395 aa24.38■■□□□ 1.49
PPP4R3A-208ENST00000555462 RAB3GAP2Q9H2M9 1393 aa24.38■■□□□ 1.49
PPP4R3A-208ENST00000555462 BICRAQ9NZM4 1560 aa24.36■■□□□ 1.49
PPP4R3A-208ENST00000555462 SENP3-EIF4A1A0A087X0R7 540 aa24.25■■□□□ 1.47
PPP4R3A-208ENST00000555462 NEFLP07196 543 aa24.23■■□□□ 1.47
PPP4R3A-208ENST00000555462 CLSPNQ9HAW4 1339 aa24.23■■□□□ 1.47
PPP4R3A-208ENST00000555462 ANP32EQ9BTT0 268 aa24.2■■□□□ 1.47
PPP4R3A-208ENST00000555462 ARID3CA6NKF2 412 aa24.2■■□□□ 1.46
PPP4R3A-208ENST00000555462 PRXQ9BXM0 1461 aa24.17■■□□□ 1.46
PPP4R3A-208ENST00000555462 KIF27Q86VH2 1401 aa24.16■■□□□ 1.46
PPP4R3A-208ENST00000555462 ARHGAP35Q9NRY4 1499 aa24.15■■□□□ 1.46
PPP4R3A-208ENST00000555462 ANP32CO43423 234 aa24.14■■□□□ 1.46
PPP4R3A-208ENST00000555462 PHLDB1Q86UU1 1377 aa24.13■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms