RNA–Protein interactions for RNA: ENST00000548825.6

PRPF40B-209, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

APPRIS P2 TSL 5 BASIC

Gene PRPF40B, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-209ENST00000548825 CNGB1Q14028 1251 aaPredicted RBP19.67■□□□□ 0.74
PRPF40B-209ENST00000548825 FHOD3Q2V2M9 1422 aa19.66■□□□□ 0.74
PRPF40B-209ENST00000548825 TDRD9Q8NDG6 1382 aaKnown RBP19.66■□□□□ 0.74
PRPF40B-209ENST00000548825 NESP48681 1621 aa19.65■□□□□ 0.74
PRPF40B-209ENST00000548825 HMGXB3Q12766 1538 aa19.59■□□□□ 0.73
PRPF40B-209ENST00000548825 PHLDB1Q86UU1 1377 aa19.58■□□□□ 0.73
PRPF40B-209ENST00000548825 ERICH3Q5RHP9 1530 aa19.58■□□□□ 0.72
PRPF40B-209ENST00000548825 TRIM52Q96A61 297 aa19.57■□□□□ 0.72
PRPF40B-209ENST00000548825 BIVM-ERCC5R4GMW8 1640 aa19.57■□□□□ 0.72
PRPF40B-209ENST00000548825 FANCD2Q9BXW9 1451 aa19.57■□□□□ 0.72
PRPF40B-209ENST00000548825 RRP7BPQ9NSQ0 103 aa19.56■□□□□ 0.72
PRPF40B-209ENST00000548825 MTUS2Q5JR59 1369 aa19.52■□□□□ 0.72
PRPF40B-209ENST00000548825 FBLN2P98095 1184 aa19.5■□□□□ 0.71
PRPF40B-209ENST00000548825 CC2D2AQ9P2K1 1620 aa19.48■□□□□ 0.71
PRPF40B-209ENST00000548825 RRBP1Q9P2E9 1410 aaKnown RBP19.48■□□□□ 0.71
PRPF40B-209ENST00000548825 SETD5Q9C0A6 1442 aa19.47■□□□□ 0.71
PRPF40B-209ENST00000548825 CLSPNQ9HAW4 1339 aa19.47■□□□□ 0.71
PRPF40B-209ENST00000548825 POLR3GLQ9BT43 218 aa19.43■□□□□ 0.7
PRPF40B-209ENST00000548825 FOXD1Q16676 465 aa19.42■□□□□ 0.7
PRPF40B-209ENST00000548825 LRRC9Q6ZRR7 1453 aa19.41■□□□□ 0.7
PRPF40B-209ENST00000548825 FHAD1B1AJZ9 1412 aa19.41■□□□□ 0.7
PRPF40B-209ENST00000548825 TONSLQ96HA7 1378 aa19.4■□□□□ 0.7
PRPF40B-209ENST00000548825 POLA1P09884 1462 aaPredicted RBP19.37■□□□□ 0.69
PRPF40B-209ENST00000548825 SUPT16HQ9Y5B9 1047 aaKnown RBP19.36■□□□□ 0.69
PRPF40B-209ENST00000548825 ANP32CO43423 234 aa19.35■□□□□ 0.69
PRPF40B-209ENST00000548825 ZNF777Q9ULD5 760 aaPredicted RBP19.35■□□□□ 0.69
PRPF40B-209ENST00000548825 SENP3-EIF4A1A0A087X0R7 540 aa19.34■□□□□ 0.69
PRPF40B-209ENST00000548825 FKBP8Q14318 412 aa19.34■□□□□ 0.69
PRPF40B-209ENST00000548825 ZNF326Q5BKZ1 582 aaKnown RBP19.34■□□□□ 0.69
PRPF40B-209ENST00000548825 TIAM1Q13009 1591 aa19.33■□□□□ 0.68
PRPF40B-209ENST00000548825 TOPBP1Q92547 1522 aa19.32■□□□□ 0.68
PRPF40B-209ENST00000548825 PCF11O94913 1555 aaKnown RBP19.28■□□□□ 0.68
PRPF40B-209ENST00000548825 PPP1R15AO75807 674 aaPredicted RBP19.28■□□□□ 0.68
PRPF40B-209ENST00000548825 IRX6P78412 446 aaPredicted RBP19.27■□□□□ 0.68
PRPF40B-209ENST00000548825 NEFLP07196 543 aa19.25■□□□□ 0.67
PRPF40B-209ENST00000548825 WDR97A6NE52 1622 aa19.25■□□□□ 0.67
PRPF40B-209ENST00000548825 AQRO60306 1485 aaKnown RBP eCLIP19.22■□□□□ 0.67
PRPF40B-209ENST00000548825 MAPKBP1O60336 1514 aa19.22■□□□□ 0.67
PRPF40B-209ENST00000548825 GAPVD1Q14C86 1478 aa19.2■□□□□ 0.66
PRPF40B-209ENST00000548825 FMN1Q68DA7 1419 aa19.19■□□□□ 0.66
PRPF40B-209ENST00000548825 HNRNPUQ00839 825 aaKnown RBP eCLIP19.18■□□□□ 0.66
PRPF40B-209ENST00000548825 FGD6Q6ZV73 1430 aa19.18■□□□□ 0.66
PRPF40B-209ENST00000548825 URB2Q14146 1524 aaKnown RBP19.17■□□□□ 0.66
PRPF40B-209ENST00000548825 ZNF644Q9H582 1327 aaPredicted RBP19.17■□□□□ 0.66
PRPF40B-209ENST00000548825 CASKIN1Q8WXD9 1431 aa19.15■□□□□ 0.66
PRPF40B-209ENST00000548825 ABCA10Q8WWZ4 1543 aa19.15■□□□□ 0.66
PRPF40B-209ENST00000548825 PTPRKQ15262 1439 aa19.15■□□□□ 0.66
PRPF40B-209ENST00000548825 DNMBPQ6XZF7 1577 aa19.15■□□□□ 0.66
PRPF40B-209ENST00000548825 PDS5BQ9NTI5 1447 aa19.14■□□□□ 0.65
PRPF40B-209ENST00000548825 FAM9BQ8IZU0 186 aa19.13■□□□□ 0.65
PRPF40B-209ENST00000548825 CCDC18Q5T9S5 1454 aa19.13■□□□□ 0.65
PRPF40B-209ENST00000548825 SLC4A1APQ9BWU0 796 aaKnown RBP19.1■□□□□ 0.65
PRPF40B-209ENST00000548825 HSPA5P11021 654 aaKnown RBP19.1■□□□□ 0.65
PRPF40B-209ENST00000548825 CHMP7Q8WUX9 453 aaPredicted RBP19.1■□□□□ 0.65
PRPF40B-209ENST00000548825 NCOA2Q15596 1464 aa19.09■□□□□ 0.65
PRPF40B-209ENST00000548825 FYCO1Q9BQS8 1478 aa19.09■□□□□ 0.65
PRPF40B-209ENST00000548825 L3MBTL2Q969R5 705 aa19.07■□□□□ 0.64
PRPF40B-209ENST00000548825 MPHOSPH9Q99550 1183 aa19.07■□□□□ 0.64
PRPF40B-209ENST00000548825 EIF4G2P78344 907 aaKnown RBP eCLIP19.02■□□□□ 0.64
PRPF40B-209ENST00000548825 KDM2AQ9Y2K7 1162 aa19.02■□□□□ 0.64
PRPF40B-209ENST00000548825 MYOM3Q5VTT5 1437 aa19.02■□□□□ 0.64
PRPF40B-209ENST00000548825 CFDP1Q9UEE9 299 aaPredicted RBP19■□□□□ 0.63
PRPF40B-209ENST00000548825 TSHZ2Q9NRE2 1034 aa19■□□□□ 0.63
PRPF40B-209ENST00000548825 CDK13Q14004 1512 aaKnown RBP19■□□□□ 0.63
PRPF40B-209ENST00000548825 NAIPQ13075 1403 aa18.98■□□□□ 0.63
PRPF40B-209ENST00000548825 CCDC184Q52MB2 194 aa18.97■□□□□ 0.63
PRPF40B-209ENST00000548825 TIMELESSQ9UNS1 1208 aa18.97■□□□□ 0.63
PRPF40B-209ENST00000548825 MAP3K1Q13233 1512 aa18.97■□□□□ 0.63
PRPF40B-209ENST00000548825 CDK11AQ9UQ88 783 aaPredicted RBP18.97■□□□□ 0.63
PRPF40B-209ENST00000548825 MRS2Q9HD23 443 aa18.96■□□□□ 0.63
PRPF40B-209ENST00000548825 UACAQ9BZF9 1416 aa18.96■□□□□ 0.63
PRPF40B-209ENST00000548825 PRDM2Q13029 1718 aa18.95■□□□□ 0.62
PRPF40B-209ENST00000548825 EFCAB5A4FU69 1503 aa18.95■□□□□ 0.62
PRPF40B-209ENST00000548825 SNAPC4Q5SXM2 1469 aa18.94■□□□□ 0.62
PRPF40B-209ENST00000548825 WASHC2AQ641Q2 1341 aa18.93■□□□□ 0.62
PRPF40B-209ENST00000548825 HFM1A2PYH4 1435 aa18.93■□□□□ 0.62
PRPF40B-209ENST00000548825 ZNF608Q9ULD9 1512 aaPredicted RBP18.93■□□□□ 0.62
PRPF40B-209ENST00000548825 C11orf95C9JLR9 678 aaPredicted RBP18.92■□□□□ 0.62
PRPF40B-209ENST00000548825 SALL2Q9Y467 1007 aaPredicted RBP18.92■□□□□ 0.62
PRPF40B-209ENST00000548825 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.9■□□□□ 0.62
PRPF40B-209ENST00000548825 NBPF8Q3BBV2 869 aa18.89■□□□□ 0.62
PRPF40B-209ENST00000548825 CFAP43Q8NDM7 1665 aa18.88■□□□□ 0.61
PRPF40B-209ENST00000548825 ERCC6Q03468 1493 aa18.88■□□□□ 0.61
PRPF40B-209ENST00000548825 CUL7Q14999 1698 aa18.87■□□□□ 0.61
PRPF40B-209ENST00000548825 CCER2I3L3R5 266 aa18.87■□□□□ 0.61
PRPF40B-209ENST00000548825 RGL3Q3MIN7 710 aa18.86■□□□□ 0.61
PRPF40B-209ENST00000548825 PKD2Q13563 968 aa18.86■□□□□ 0.61
PRPF40B-209ENST00000548825 LAMC3Q9Y6N6 1575 aa18.85■□□□□ 0.61
PRPF40B-209ENST00000548825 MAGI3Q5TCQ9 1506 aa18.85■□□□□ 0.61
PRPF40B-209ENST00000548825 GRIN2BQ13224 1484 aa18.84■□□□□ 0.61
PRPF40B-209ENST00000548825 CTTNBP2Q8WZ74 1663 aa18.84■□□□□ 0.61
PRPF40B-209ENST00000548825 KIF21AQ7Z4S6 1674 aa18.83■□□□□ 0.6
PRPF40B-209ENST00000548825 EPRSP07814 1512 aaKnown RBP18.83■□□□□ 0.6
PRPF40B-209ENST00000548825 PTPN23Q9H3S7 1636 aa18.83■□□□□ 0.6
PRPF40B-209ENST00000548825 PLEKHD1A6NEE1 506 aa18.82■□□□□ 0.6
PRPF40B-209ENST00000548825 JPH4Q96JJ6 628 aa18.82■□□□□ 0.6
PRPF40B-209ENST00000548825 PRG4Q92954 1404 aaPredicted RBP18.82■□□□□ 0.6
PRPF40B-209ENST00000548825 HNRNPMP52272 730 aaKnown RBP eCLIP18.81■□□□□ 0.6
PRPF40B-209ENST00000548825 THOC2Q8NI27 1593 aaKnown RBP18.79■□□□□ 0.6
PRPF40B-209ENST00000548825 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 154.8 ms