RNA–Protein interactions for RNA: ENST00000548825.6

PRPF40B-209, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

APPRIS P2 TSL 5 BASIC

Gene PRPF40B, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-209ENST00000548825 NISCHQ9Y2I1 1504 aa27.28■■□□□ 1.96
PRPF40B-209ENST00000548825 SHROOM4Q9ULL8 1493 aa24.51■■□□□ 1.51
PRPF40B-209ENST00000548825 DCAF8L2P0C7V8 631 aa24.26■■□□□ 1.47
PRPF40B-209ENST00000548825 SUPT5HO00267 1087 aaKnown RBP24.12■■□□□ 1.45
PRPF40B-209ENST00000548825 ZCCHC6Q5VYS8 1495 aaKnown RBP22.94■■□□□ 1.26
PRPF40B-209ENST00000548825 CHIC1Q5VXU3 224 aa22.84■■□□□ 1.25
PRPF40B-209ENST00000548825 EHMT2Q96KQ7 1210 aa22.74■■□□□ 1.23
PRPF40B-209ENST00000548825 PCGF6Q9BYE7 350 aa22.65■■□□□ 1.22
PRPF40B-209ENST00000548825 CCDC180Q9P1Z9 1646 aa22.63■■□□□ 1.21
PRPF40B-209ENST00000548825 LOC105371045A0A1W2PR82 267 aa22.62■■□□□ 1.21
PRPF40B-209ENST00000548825 MYO15BQ96JP2 1530 aa22.57■■□□□ 1.2
PRPF40B-209ENST00000548825 FAM9AQ8IZU1 332 aaPredicted RBP22.49■■□□□ 1.19
PRPF40B-209ENST00000548825 PPARGC1BQ86YN6 1023 aaKnown RBP22.22■■□□□ 1.15
PRPF40B-209ENST00000548825 ABCC9O60706 1549 aa22.19■■□□□ 1.14
PRPF40B-209ENST00000548825 TRIM41Q8WV44 630 aa22.15■■□□□ 1.14
PRPF40B-209ENST00000548825 HRCP23327 699 aa22.12■■□□□ 1.13
PRPF40B-209ENST00000548825 SCRIBQ14160 1630 aa22.1■■□□□ 1.13
PRPF40B-209ENST00000548825 TTBK1Q5TCY1 1321 aaPredicted RBP21.91■■□□□ 1.1
PRPF40B-209ENST00000548825 DCAF1Q9Y4B6 1507 aa21.84■■□□□ 1.09
PRPF40B-209ENST00000548825 RSF1Q96T23 1441 aaPredicted RBP21.81■■□□□ 1.08
PRPF40B-209ENST00000548825 TRIM26Q12899 539 aaPredicted RBP21.72■■□□□ 1.07
PRPF40B-209ENST00000548825 CECR2Q9BXF3 1484 aa21.67■■□□□ 1.06
PRPF40B-209ENST00000548825 PABPN1Q86U42 306 aaKnown RBP eCLIP21.62■■□□□ 1.05
PRPF40B-209ENST00000548825 RB1CC1Q8TDY2 1594 aa21.58■■□□□ 1.05
PRPF40B-209ENST00000548825 RANGAP1P46060 587 aaPredicted RBP21.45■■□□□ 1.03
PRPF40B-209ENST00000548825 MROH2BQ7Z745 1585 aa21.42■■□□□ 1.02
PRPF40B-209ENST00000548825 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.33■■□□□ 1.01
PRPF40B-209ENST00000548825 UBTFP17480 764 aaKnown RBP21.31■■□□□ 1
PRPF40B-209ENST00000548825 WIZO95785 1651 aa21.27■■□□□ 1
PRPF40B-209ENST00000548825 CCER1Q8TC90 406 aaPredicted RBP21.24■□□□□ 0.99
PRPF40B-209ENST00000548825 NACADO15069 1562 aa21.23■□□□□ 0.99
PRPF40B-209ENST00000548825 ZEB1P37275 1124 aaPredicted RBP21.08■□□□□ 0.97
PRPF40B-209ENST00000548825 ABCC8Q09428 1581 aa21.06■□□□□ 0.96
PRPF40B-209ENST00000548825 CCDC88BA6NC98 1476 aa20.97■□□□□ 0.95
PRPF40B-209ENST00000548825 SOGA1O94964 1423 aa20.95■□□□□ 0.94
PRPF40B-209ENST00000548825 HNRNPUL2Q1KMD3 747 aaKnown RBP20.94■□□□□ 0.94
PRPF40B-209ENST00000548825 BAZ1AQ9NRL2 1556 aaPredicted RBP20.92■□□□□ 0.94
PRPF40B-209ENST00000548825 CSRNP3Q8WYN3 585 aa20.92■□□□□ 0.94
PRPF40B-209ENST00000548825 RUSC2Q8N2Y8 1516 aa20.83■□□□□ 0.92
PRPF40B-209ENST00000548825 APLP2Q06481 763 aa20.8■□□□□ 0.92
PRPF40B-209ENST00000548825 CEP162Q5TB80 1403 aa20.75■□□□□ 0.91
PRPF40B-209ENST00000548825 SMARCA4P51532 1647 aa20.71■□□□□ 0.91
PRPF40B-209ENST00000548825 YTHDC1Q96MU7 727 aaKnown RBP20.7■□□□□ 0.9
PRPF40B-209ENST00000548825 TOP2AP11388 1531 aaKnown RBP20.68■□□□□ 0.9
PRPF40B-209ENST00000548825 SMARCA2P51531 1590 aa20.63■□□□□ 0.89
PRPF40B-209ENST00000548825 DIEXFQ68CQ4 756 aaKnown RBP20.63■□□□□ 0.89
PRPF40B-209ENST00000548825 WRNQ14191 1432 aaPredicted RBP eCLIP20.62■□□□□ 0.89
PRPF40B-209ENST00000548825 ITGAEP38570 1179 aa20.61■□□□□ 0.89
PRPF40B-209ENST00000548825 SCAF1Q9H7N4 1312 aaKnown RBP20.56■□□□□ 0.88
PRPF40B-209ENST00000548825 ATP1B4Q9UN42 357 aaPredicted RBP20.53■□□□□ 0.88
PRPF40B-209ENST00000548825 TNIKQ9UKE5 1360 aa20.52■□□□□ 0.88
PRPF40B-209ENST00000548825 UNC13AQ9UPW8 1703 aa20.49■□□□□ 0.87
PRPF40B-209ENST00000548825 BAZ1BQ9UIG0 1483 aaKnown RBP20.47■□□□□ 0.87
PRPF40B-209ENST00000548825 GOLGA3Q08378 1498 aa20.43■□□□□ 0.86
PRPF40B-209ENST00000548825 NEUROD1Q13562 356 aa20.43■□□□□ 0.86
PRPF40B-209ENST00000548825 CLIP1P30622 1438 aa20.43■□□□□ 0.86
PRPF40B-209ENST00000548825 EIF4G1Q04637 1599 aaKnown RBP20.4■□□□□ 0.86
PRPF40B-209ENST00000548825 BICRAQ9NZM4 1560 aa20.39■□□□□ 0.85
PRPF40B-209ENST00000548825 ATAD2BQ9ULI0 1458 aa20.38■□□□□ 0.85
PRPF40B-209ENST00000548825 P3H3Q8IVL6 736 aa20.35■□□□□ 0.85
PRPF40B-209ENST00000548825 GTF3C3Q9Y5Q9 886 aa20.33■□□□□ 0.84
PRPF40B-209ENST00000548825 RAPGEF2Q9Y4G8 1499 aa20.33■□□□□ 0.84
PRPF40B-209ENST00000548825 ZNF316A6NFI3 1004 aaPredicted RBP20.31■□□□□ 0.84
PRPF40B-209ENST00000548825 EEA1Q15075 1411 aa20.31■□□□□ 0.84
PRPF40B-209ENST00000548825 CENPBP07199 599 aaPredicted RBP20.3■□□□□ 0.84
PRPF40B-209ENST00000548825 SYNJ1O43426 1573 aa20.3■□□□□ 0.84
PRPF40B-209ENST00000548825 ACIN1Q9UKV3 1341 aaKnown RBP20.28■□□□□ 0.84
PRPF40B-209ENST00000548825 CEP164Q9UPV0 1460 aa20.27■□□□□ 0.84
PRPF40B-209ENST00000548825 KANK4Q5T7N3 995 aaPredicted RBP20.25■□□□□ 0.83
PRPF40B-209ENST00000548825 MIER1Q8N108 512 aa20.2■□□□□ 0.82
PRPF40B-209ENST00000548825 VPS8Q8N3P4 1428 aa20.12■□□□□ 0.81
PRPF40B-209ENST00000548825 FAM50AQ14320 339 aaKnown RBP20.12■□□□□ 0.81
PRPF40B-209ENST00000548825 ARID3CA6NKF2 412 aa19.98■□□□□ 0.79
PRPF40B-209ENST00000548825 KIF27Q86VH2 1401 aa19.97■□□□□ 0.79
PRPF40B-209ENST00000548825 KIF21BO75037 1637 aa19.96■□□□□ 0.79
PRPF40B-209ENST00000548825 HIRIP3Q9BW71 556 aaPredicted RBP19.96■□□□□ 0.79
PRPF40B-209ENST00000548825 CUX2O14529 1486 aa19.93■□□□□ 0.78
PRPF40B-209ENST00000548825 PEG3Q9GZU2 1588 aa19.91■□□□□ 0.78
PRPF40B-209ENST00000548825 ARAP1Q96P48 1450 aa19.88■□□□□ 0.77
PRPF40B-209ENST00000548825 CUX1P39880 1505 aa19.87■□□□□ 0.77
PRPF40B-209ENST00000548825 SIN3AQ96ST3 1273 aa19.84■□□□□ 0.77
PRPF40B-209ENST00000548825 TOP2BQ02880 1626 aa19.83■□□□□ 0.77
PRPF40B-209ENST00000548825 CARMIL1Q5VZK9 1371 aa19.81■□□□□ 0.76
PRPF40B-209ENST00000548825 NCAPD3P42695 1498 aa19.8■□□□□ 0.76
PRPF40B-209ENST00000548825 DHX57Q6P158 1386 aaKnown RBP19.78■□□□□ 0.76
PRPF40B-209ENST00000548825 PRXQ9BXM0 1461 aa19.78■□□□□ 0.76
PRPF40B-209ENST00000548825 CCNB3Q8WWL7 1395 aa19.77■□□□□ 0.76
PRPF40B-209ENST00000548825 DNAJC5BQ9UF47 199 aa19.77■□□□□ 0.76
PRPF40B-209ENST00000548825 IGF1RP08069 1367 aa19.76■□□□□ 0.75
PRPF40B-209ENST00000548825 CADPSQ9ULU8 1353 aa19.73■□□□□ 0.75
PRPF40B-209ENST00000548825 DDX10Q13206 875 aaKnown RBP19.73■□□□□ 0.75
PRPF40B-209ENST00000548825 KCNH8Q96L42 1107 aa19.72■□□□□ 0.75
PRPF40B-209ENST00000548825 PELP1Q8IZL8 1130 aaKnown RBP19.71■□□□□ 0.75
PRPF40B-209ENST00000548825 CFTRP13569 1480 aa19.71■□□□□ 0.75
PRPF40B-209ENST00000548825 ARHGAP35Q9NRY4 1499 aa19.7■□□□□ 0.74
PRPF40B-209ENST00000548825 RAD54L2Q9Y4B4 1467 aa19.69■□□□□ 0.74
PRPF40B-209ENST00000548825 BCANQ96GW7 911 aa19.68■□□□□ 0.74
PRPF40B-209ENST00000548825 CHIC2Q9UKJ5 165 aa19.68■□□□□ 0.74
PRPF40B-209ENST00000548825 RAB3GAP2Q9H2M9 1393 aa19.67■□□□□ 0.74
PRPF40B-209ENST00000548825 FGD5Q6ZNL6 1462 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms