RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 FAM69CQ0P6D2 419 aa30.07■■■□□ 2.4
VPS29-204ENST00000548259 ABCC10Q5T3U5 1492 aa30■■■□□ 2.39
VPS29-204ENST00000548259 KIF13AQ9H1H9 1805 aa30■■■□□ 2.39
VPS29-204ENST00000548259 RUSC2Q8N2Y8 1516 aa29.96■■■□□ 2.39
VPS29-204ENST00000548259 MAPKBP1O60336 1514 aa29.94■■■□□ 2.38
VPS29-204ENST00000548259 KIAA0586Q9BVV6 1533 aa29.88■■■□□ 2.37
VPS29-204ENST00000548259 DIP2BQ9P265 1576 aa29.83■■■□□ 2.37
VPS29-204ENST00000548259 KIF27Q86VH2 1401 aa29.83■■■□□ 2.37
VPS29-204ENST00000548259 ADCY10Q96PN6 1610 aa29.82■■■□□ 2.36
VPS29-204ENST00000548259 IGF1RP08069 1367 aa29.8■■■□□ 2.36
VPS29-204ENST00000548259 KDM6BO15054 1643 aa29.74■■■□□ 2.35
VPS29-204ENST00000548259 CUL7Q14999 1698 aa29.73■■■□□ 2.35
VPS29-204ENST00000548259 PTPRGP23470 1445 aa29.73■■■□□ 2.35
VPS29-204ENST00000548259 CARMIL2Q6F5E8 1435 aa29.69■■■□□ 2.34
VPS29-204ENST00000548259 TTBK1Q5TCY1 1321 aaPredicted RBP29.66■■■□□ 2.34
VPS29-204ENST00000548259 KDM4FA0A1W2PPD8 638 aa29.64■■■□□ 2.34
VPS29-204ENST00000548259 CARMIL1Q5VZK9 1371 aa29.64■■■□□ 2.33
VPS29-204ENST00000548259 TNIKQ9UKE5 1360 aa29.64■■■□□ 2.33
VPS29-204ENST00000548259 ABCC2Q92887 1545 aa29.58■■■□□ 2.33
VPS29-204ENST00000548259 PLB1Q6P1J6 1458 aa29.57■■■□□ 2.32
VPS29-204ENST00000548259 TSPOAP1O95153 1857 aa29.57■■■□□ 2.32
VPS29-204ENST00000548259 ASXL2Q76L83 1435 aa29.53■■■□□ 2.32
VPS29-204ENST00000548259 IQGAP2Q13576 1575 aa29.48■■■□□ 2.31
VPS29-204ENST00000548259 UHRF1BP1LA0JNW5 1464 aa29.48■■■□□ 2.31
VPS29-204ENST00000548259 UACAQ9BZF9 1416 aa29.46■■■□□ 2.31
VPS29-204ENST00000548259 GLI2P10070 1586 aa29.46■■■□□ 2.31
VPS29-204ENST00000548259 TEX14Q8IWB6 1497 aa29.36■■■□□ 2.29
VPS29-204ENST00000548259 DISP1Q96F81 1524 aa29.34■■■□□ 2.29
VPS29-204ENST00000548259 EPRSP07814 1512 aaKnown RBP29.32■■■□□ 2.28
VPS29-204ENST00000548259 KDM5BQ9UGL1 1544 aa29.32■■■□□ 2.28
VPS29-204ENST00000548259 ADGRL1O94910 1474 aa29.31■■■□□ 2.28
VPS29-204ENST00000548259 RAPGEF2Q9Y4G8 1499 aa29.29■■■□□ 2.28
VPS29-204ENST00000548259 PPRC1Q5VV67 1664 aaKnown RBP29.28■■■□□ 2.28
VPS29-204ENST00000548259 UGGT2Q9NYU1 1516 aa29.28■■■□□ 2.28
VPS29-204ENST00000548259 ILDR1Q86SU0 546 aaPredicted RBP29.23■■■□□ 2.27
VPS29-204ENST00000548259 MAP3K4Q9Y6R4 1608 aa29.21■■■□□ 2.27
VPS29-204ENST00000548259 COL17A1Q9UMD9 1497 aaPredicted RBP29.21■■■□□ 2.27
VPS29-204ENST00000548259 ZCCHC11Q5TAX3 1644 aaKnown RBP29.19■■■□□ 2.26
VPS29-204ENST00000548259 KIAA0556O60303 1618 aa29.18■■■□□ 2.26
VPS29-204ENST00000548259 WDR7Q9Y4E6 1490 aa29.17■■■□□ 2.26
VPS29-204ENST00000548259 GOLGA3Q08378 1498 aa29.12■■■□□ 2.25
VPS29-204ENST00000548259 FAM9AQ8IZU1 332 aaPredicted RBP29.12■■■□□ 2.25
VPS29-204ENST00000548259 CD109Q6YHK3 1445 aa29.08■■■□□ 2.25
VPS29-204ENST00000548259 KCNH8Q96L42 1107 aa29.06■■■□□ 2.24
VPS29-204ENST00000548259 MAGI3Q5TCQ9 1506 aa29.04■■■□□ 2.24
VPS29-204ENST00000548259 HECW2Q9P2P5 1572 aa29.01■■■□□ 2.23
VPS29-204ENST00000548259 CFAP43Q8NDM7 1665 aa28.96■■■□□ 2.23
VPS29-204ENST00000548259 ABCA8O94911 1581 aa28.94■■■□□ 2.22
VPS29-204ENST00000548259 CTTNBP2Q8WZ74 1663 aa28.93■■■□□ 2.22
VPS29-204ENST00000548259 PHLDB1Q86UU1 1377 aa28.85■■■□□ 2.21
VPS29-204ENST00000548259 PRXQ9BXM0 1461 aa28.84■■■□□ 2.21
VPS29-204ENST00000548259 ARAP3Q8WWN8 1544 aa28.82■■■□□ 2.2
VPS29-204ENST00000548259 ARID3CA6NKF2 412 aa28.78■■■□□ 2.2
VPS29-204ENST00000548259 P3H3Q8IVL6 736 aa28.76■■■□□ 2.19
VPS29-204ENST00000548259 ATP10BO94823 1461 aa28.75■■■□□ 2.19
VPS29-204ENST00000548259 KIF21BO75037 1637 aa28.72■■■□□ 2.19
VPS29-204ENST00000548259 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.71■■■□□ 2.19
VPS29-204ENST00000548259 HNRNPUL2Q1KMD3 747 aaKnown RBP28.71■■■□□ 2.19
VPS29-204ENST00000548259 NEO1Q92859 1461 aa28.66■■■□□ 2.18
VPS29-204ENST00000548259 FBXO41Q8TF61 875 aa28.66■■■□□ 2.18
VPS29-204ENST00000548259 ABCA9Q8IUA7 1624 aa28.65■■■□□ 2.18
VPS29-204ENST00000548259 RAPGEF3O95398 923 aa28.65■■■□□ 2.18
VPS29-204ENST00000548259 ARID4BQ4LE39 1312 aaPredicted RBP28.64■■■□□ 2.17
VPS29-204ENST00000548259 PTPRMP28827 1452 aa28.63■■■□□ 2.17
VPS29-204ENST00000548259 CSRNP3Q8WYN3 585 aa28.6■■■□□ 2.17
VPS29-204ENST00000548259 RAPGEF6Q8TEU7 1601 aa28.55■■■□□ 2.16
VPS29-204ENST00000548259 ADAMTSL3P82987 1691 aa28.54■■■□□ 2.16
VPS29-204ENST00000548259 SAMD9Q5K651 1589 aa28.54■■■□□ 2.16
VPS29-204ENST00000548259 PLEKHD1A6NEE1 506 aa28.53■■■□□ 2.16
VPS29-204ENST00000548259 DENND4BO75064 1496 aaPredicted RBP28.47■■■□□ 2.15
VPS29-204ENST00000548259 NUP153P49790 1475 aaKnown RBP28.46■■■□□ 2.15
VPS29-204ENST00000548259 RANGAP1P46060 587 aaPredicted RBP28.46■■■□□ 2.15
VPS29-204ENST00000548259 BCORL1Q5H9F3 1711 aa28.44■■■□□ 2.14
VPS29-204ENST00000548259 PCF11O94913 1555 aaKnown RBP28.43■■■□□ 2.14
VPS29-204ENST00000548259 POGZQ7Z3K3 1410 aa28.43■■■□□ 2.14
VPS29-204ENST00000548259 EEA1Q15075 1411 aa28.42■■■□□ 2.14
VPS29-204ENST00000548259 FRMPD1Q5SYB0 1578 aa28.41■■■□□ 2.14
VPS29-204ENST00000548259 AKNAQ7Z591 1439 aa28.41■■■□□ 2.14
VPS29-204ENST00000548259 MADDQ8WXG6 1647 aa28.4■■■□□ 2.14
VPS29-204ENST00000548259 FHOD3Q2V2M9 1422 aa28.39■■■□□ 2.14
VPS29-204ENST00000548259 FANCAO15360 1455 aa28.39■■■□□ 2.13
VPS29-204ENST00000548259 ARHGEF40Q8TER5 1519 aa28.38■■■□□ 2.13
VPS29-204ENST00000548259 CFAP74Q9C0B2 1584 aa28.37■■■□□ 2.13
VPS29-204ENST00000548259 LMTK3Q96Q04 1460 aa28.37■■■□□ 2.13
VPS29-204ENST00000548259 MAGI2Q86UL8 1455 aa28.3■■■□□ 2.12
VPS29-204ENST00000548259 PLPPR3Q6T4P5 718 aa28.3■■■□□ 2.12
VPS29-204ENST00000548259 EFCAB5A4FU69 1503 aa28.28■■■□□ 2.12
VPS29-204ENST00000548259 RIMS1Q86UR5 1692 aaKnown RBP28.28■■■□□ 2.12
VPS29-204ENST00000548259 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.28■■■□□ 2.12
VPS29-204ENST00000548259 RICTORQ6R327 1708 aa28.27■■■□□ 2.12
VPS29-204ENST00000548259 ZFYVE16Q7Z3T8 1539 aa28.27■■■□□ 2.12
VPS29-204ENST00000548259 ZMYM4Q5VZL5 1548 aa28.26■■■□□ 2.11
VPS29-204ENST00000548259 HSPA2P54652 639 aa28.25■■■□□ 2.11
VPS29-204ENST00000548259 MLECQ14165 292 aa28.23■■■□□ 2.11
VPS29-204ENST00000548259 YEATS2Q9ULM3 1422 aa28.21■■■□□ 2.11
VPS29-204ENST00000548259 SCAPERQ9BY12 1400 aa28.19■■■□□ 2.1
VPS29-204ENST00000548259 CDK11AQ9UQ88 783 aaPredicted RBP28.19■■■□□ 2.1
VPS29-204ENST00000548259 TTC37Q6PGP7 1564 aa28.19■■■□□ 2.1
VPS29-204ENST00000548259 PLCH2O75038 1416 aa28.18■■■□□ 2.1
VPS29-204ENST00000548259 EFCAB2Q5VUJ9 269 aa28.16■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms