RNA–Protein interactions for RNA: ENST00000543995.5

TNFRSF1A-216, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 1,531 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-216ENST00000543995 KIAA0586Q9BVV6 1533 aa23.75■■□□□ 1.39
TNFRSF1A-216ENST00000543995 CTTNBP2Q8WZ74 1663 aa23.74■■□□□ 1.39
TNFRSF1A-216ENST00000543995 GOLGA3Q08378 1498 aa23.71■■□□□ 1.39
TNFRSF1A-216ENST00000543995 IQGAP2Q13576 1575 aa23.69■■□□□ 1.38
TNFRSF1A-216ENST00000543995 UBTFP17480 764 aaKnown RBP23.67■■□□□ 1.38
TNFRSF1A-216ENST00000543995 SHROOM2Q13796 1616 aa23.66■■□□□ 1.38
TNFRSF1A-216ENST00000543995 JPH4Q96JJ6 628 aa23.66■■□□□ 1.38
TNFRSF1A-216ENST00000543995 ARHGEF11O15085 1522 aa23.61■■□□□ 1.37
TNFRSF1A-216ENST00000543995 RIMBP3CA6NJZ7 1639 aa23.6■■□□□ 1.37
TNFRSF1A-216ENST00000543995 RIMBP3BA6NNM3 1639 aa23.6■■□□□ 1.37
TNFRSF1A-216ENST00000543995 RIMBP3Q9UFD9 1639 aa23.6■■□□□ 1.37
TNFRSF1A-216ENST00000543995 PRG4Q92954 1404 aaPredicted RBP23.59■■□□□ 1.37
TNFRSF1A-216ENST00000543995 ERCC6L2Q5T890 1561 aa23.55■■□□□ 1.36
TNFRSF1A-216ENST00000543995 UGGT2Q9NYU1 1516 aa23.54■■□□□ 1.36
TNFRSF1A-216ENST00000543995 RANGAP1P46060 587 aaPredicted RBP23.53■■□□□ 1.36
TNFRSF1A-216ENST00000543995 CARMIL2Q6F5E8 1435 aa23.5■■□□□ 1.35
TNFRSF1A-216ENST00000543995 LOC105371045A0A1W2PR82 267 aa23.49■■□□□ 1.35
TNFRSF1A-216ENST00000543995 DISP1Q96F81 1524 aa23.47■■□□□ 1.35
TNFRSF1A-216ENST00000543995 KIAA0556O60303 1618 aa23.46■■□□□ 1.35
TNFRSF1A-216ENST00000543995 TNIKQ9UKE5 1360 aa23.45■■□□□ 1.34
TNFRSF1A-216ENST00000543995 ARAP1Q96P48 1450 aa23.44■■□□□ 1.34
TNFRSF1A-216ENST00000543995 TTBK1Q5TCY1 1321 aaPredicted RBP23.41■■□□□ 1.34
TNFRSF1A-216ENST00000543995 CYB5RLQ6IPT4 315 aa23.41■■□□□ 1.34
TNFRSF1A-216ENST00000543995 SAMD9Q5K651 1589 aa23.4■■□□□ 1.34
TNFRSF1A-216ENST00000543995 P3H3Q8IVL6 736 aa23.39■■□□□ 1.34
TNFRSF1A-216ENST00000543995 EFCAB5A4FU69 1503 aa23.37■■□□□ 1.33
TNFRSF1A-216ENST00000543995 PTPRGP23470 1445 aa23.35■■□□□ 1.33
TNFRSF1A-216ENST00000543995 ARHGAP35Q9NRY4 1499 aa23.3■■□□□ 1.32
TNFRSF1A-216ENST00000543995 CLIP1P30622 1438 aa23.29■■□□□ 1.32
TNFRSF1A-216ENST00000543995 FHOD3Q2V2M9 1422 aa23.29■■□□□ 1.32
TNFRSF1A-216ENST00000543995 CEP162Q5TB80 1403 aa23.27■■□□□ 1.32
TNFRSF1A-216ENST00000543995 UACAQ9BZF9 1416 aa23.2■■□□□ 1.3
TNFRSF1A-216ENST00000543995 PLB1Q6P1J6 1458 aa23.18■■□□□ 1.3
TNFRSF1A-216ENST00000543995 ADCY10Q96PN6 1610 aa23.18■■□□□ 1.3
TNFRSF1A-216ENST00000543995 FMN1Q68DA7 1419 aa23.16■■□□□ 1.3
TNFRSF1A-216ENST00000543995 ABCA8O94911 1581 aa23.15■■□□□ 1.3
TNFRSF1A-216ENST00000543995 ABCC2Q92887 1545 aa23.15■■□□□ 1.3
TNFRSF1A-216ENST00000543995 UHRF1BP1LA0JNW5 1464 aa23.14■■□□□ 1.3
TNFRSF1A-216ENST00000543995 RAPGEF6Q8TEU7 1601 aa23.14■■□□□ 1.29
TNFRSF1A-216ENST00000543995 NPM1P06748 294 aaKnown RBP eCLIP23.12■■□□□ 1.29
TNFRSF1A-216ENST00000543995 ATP1B4Q9UN42 357 aaPredicted RBP23.08■■□□□ 1.28
TNFRSF1A-216ENST00000543995 ARID3CA6NKF2 412 aa23.05■■□□□ 1.28
TNFRSF1A-216ENST00000543995 PCF11O94913 1555 aaKnown RBP23.03■■□□□ 1.28
TNFRSF1A-216ENST00000543995 ZCCHC11Q5TAX3 1644 aaKnown RBP23.03■■□□□ 1.28
TNFRSF1A-216ENST00000543995 HECW1Q76N89 1606 aa23.03■■□□□ 1.28
TNFRSF1A-216ENST00000543995 KDM5BQ9UGL1 1544 aa23.03■■□□□ 1.28
TNFRSF1A-216ENST00000543995 NUP153P49790 1475 aaKnown RBP23.02■■□□□ 1.28
TNFRSF1A-216ENST00000543995 CASKIN1Q8WXD9 1431 aa23■■□□□ 1.27
TNFRSF1A-216ENST00000543995 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.99■■□□□ 1.27
TNFRSF1A-216ENST00000543995 HNRNPUL2Q1KMD3 747 aaKnown RBP22.99■■□□□ 1.27
TNFRSF1A-216ENST00000543995 ATP10BO94823 1461 aa22.97■■□□□ 1.27
TNFRSF1A-216ENST00000543995 FYCO1Q9BQS8 1478 aa22.97■■□□□ 1.27
TNFRSF1A-216ENST00000543995 VPS8Q8N3P4 1428 aa22.97■■□□□ 1.27
TNFRSF1A-216ENST00000543995 MAPKBP1O60336 1514 aa22.95■■□□□ 1.26
TNFRSF1A-216ENST00000543995 EPRSP07814 1512 aaKnown RBP22.93■■□□□ 1.26
TNFRSF1A-216ENST00000543995 LRRIQ1Q96JM4 1722 aa22.93■■□□□ 1.26
TNFRSF1A-216ENST00000543995 ASXL2Q76L83 1435 aa22.92■■□□□ 1.26
TNFRSF1A-216ENST00000543995 CDK13Q14004 1512 aaKnown RBP22.92■■□□□ 1.26
TNFRSF1A-216ENST00000543995 CCDC18Q5T9S5 1454 aa22.89■■□□□ 1.25
TNFRSF1A-216ENST00000543995 WDR7Q9Y4E6 1490 aa22.86■■□□□ 1.25
TNFRSF1A-216ENST00000543995 TRHP20396 242 aaPredicted RBP22.86■■□□□ 1.25
TNFRSF1A-216ENST00000543995 PLEKHD1A6NEE1 506 aa22.84■■□□□ 1.25
TNFRSF1A-216ENST00000543995 CDK11AQ9UQ88 783 aaPredicted RBP22.84■■□□□ 1.25
TNFRSF1A-216ENST00000543995 KCNH8Q96L42 1107 aa22.81■■□□□ 1.24
TNFRSF1A-216ENST00000543995 ABCC10Q5T3U5 1492 aa22.8■■□□□ 1.24
TNFRSF1A-216ENST00000543995 DIP2BQ9P265 1576 aa22.79■■□□□ 1.24
TNFRSF1A-216ENST00000543995 FAM69CQ0P6D2 419 aa22.78■■□□□ 1.24
TNFRSF1A-216ENST00000543995 KIF13AQ9H1H9 1805 aa22.78■■□□□ 1.24
TNFRSF1A-216ENST00000543995 APLP2Q06481 763 aa22.77■■□□□ 1.24
TNFRSF1A-216ENST00000543995 CFAP43Q8NDM7 1665 aa22.76■■□□□ 1.23
TNFRSF1A-216ENST00000543995 TIAM1Q13009 1591 aa22.75■■□□□ 1.23
TNFRSF1A-216ENST00000543995 TROQ12816 1431 aaPredicted RBP22.73■■□□□ 1.23
TNFRSF1A-216ENST00000543995 MAGI3Q5TCQ9 1506 aa22.72■■□□□ 1.23
TNFRSF1A-216ENST00000543995 GLI2P10070 1586 aa22.71■■□□□ 1.23
TNFRSF1A-216ENST00000543995 MTUS2Q5JR59 1369 aa22.71■■□□□ 1.23
TNFRSF1A-216ENST00000543995 MAP3K1Q13233 1512 aa22.7■■□□□ 1.22
TNFRSF1A-216ENST00000543995 KIF14Q15058 1648 aa22.68■■□□□ 1.22
TNFRSF1A-216ENST00000543995 EHBP1L1Q8N3D4 1523 aa22.66■■□□□ 1.22
TNFRSF1A-216ENST00000543995 TSPOAP1O95153 1857 aa22.66■■□□□ 1.22
TNFRSF1A-216ENST00000543995 ABCA9Q8IUA7 1624 aa22.65■■□□□ 1.22
TNFRSF1A-216ENST00000543995 MAP3K4Q9Y6R4 1608 aa22.65■■□□□ 1.22
TNFRSF1A-216ENST00000543995 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.64■■□□□ 1.21
TNFRSF1A-216ENST00000543995 LRRC9Q6ZRR7 1453 aa22.64■■□□□ 1.21
TNFRSF1A-216ENST00000543995 TTC37Q6PGP7 1564 aa22.62■■□□□ 1.21
TNFRSF1A-216ENST00000543995 KANK4Q5T7N3 995 aaPredicted RBP22.62■■□□□ 1.21
TNFRSF1A-216ENST00000543995 CD109Q6YHK3 1445 aa22.61■■□□□ 1.21
TNFRSF1A-216ENST00000543995 SUPT6HQ7KZ85 1726 aaKnown RBP22.59■■□□□ 1.21
TNFRSF1A-216ENST00000543995 MYO5CQ9NQX4 1742 aa22.56■■□□□ 1.2
TNFRSF1A-216ENST00000543995 PPRC1Q5VV67 1664 aaKnown RBP22.55■■□□□ 1.2
TNFRSF1A-216ENST00000543995 NCOA2Q15596 1464 aa22.53■■□□□ 1.2
TNFRSF1A-216ENST00000543995 TEX14Q8IWB6 1497 aa22.52■■□□□ 1.2
TNFRSF1A-216ENST00000543995 CCNB3Q8WWL7 1395 aa22.51■■□□□ 1.19
TNFRSF1A-216ENST00000543995 PLCH2O75038 1416 aa22.5■■□□□ 1.19
TNFRSF1A-216ENST00000543995 CDC42BPAQ5VT25 1732 aa22.5■■□□□ 1.19
TNFRSF1A-216ENST00000543995 PPARGC1BQ86YN6 1023 aaKnown RBP22.49■■□□□ 1.19
TNFRSF1A-216ENST00000543995 PREX2Q70Z35 1606 aa22.49■■□□□ 1.19
TNFRSF1A-216ENST00000543995 CDC42BPBQ9Y5S2 1711 aa22.48■■□□□ 1.19
TNFRSF1A-216ENST00000543995 ARHGAP5Q13017 1502 aa22.47■■□□□ 1.19
TNFRSF1A-216ENST00000543995 ITSN2Q9NZM3 1697 aa22.47■■□□□ 1.19
TNFRSF1A-216ENST00000543995 GPATCH8Q9UKJ3 1502 aaKnown RBP22.46■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms