RNA–Protein interactions for RNA: ENST00000543995.5

TNFRSF1A-216, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 1,531 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-216ENST00000543995 NISCHQ9Y2I1 1504 aa34.41■■■■□ 3.1
TNFRSF1A-216ENST00000543995 CCDC180Q9P1Z9 1646 aa30.46■■■□□ 2.47
TNFRSF1A-216ENST00000543995 ABCC9O60706 1549 aa29.48■■■□□ 2.31
TNFRSF1A-216ENST00000543995 ZCCHC6Q5VYS8 1495 aaKnown RBP28.74■■■□□ 2.19
TNFRSF1A-216ENST00000543995 DCAF8L2P0C7V8 631 aa28.71■■■□□ 2.19
TNFRSF1A-216ENST00000543995 NACADO15069 1562 aa28.54■■■□□ 2.16
TNFRSF1A-216ENST00000543995 RB1CC1Q8TDY2 1594 aa28.5■■■□□ 2.15
TNFRSF1A-216ENST00000543995 DCAF1Q9Y4B6 1507 aa28.46■■■□□ 2.15
TNFRSF1A-216ENST00000543995 MYO15BQ96JP2 1530 aa28.44■■■□□ 2.14
TNFRSF1A-216ENST00000543995 UNC13AQ9UPW8 1703 aa27.89■■■□□ 2.06
TNFRSF1A-216ENST00000543995 SCRIBQ14160 1630 aa27.86■■■□□ 2.05
TNFRSF1A-216ENST00000543995 PABPN1Q86U42 306 aaKnown RBP eCLIP27.62■■■□□ 2.01
TNFRSF1A-216ENST00000543995 BICRAQ9NZM4 1560 aa27.59■■■□□ 2.01
TNFRSF1A-216ENST00000543995 SHROOM4Q9ULL8 1493 aa27.48■■□□□ 1.99
TNFRSF1A-216ENST00000543995 EIF4G1Q04637 1599 aaKnown RBP26.86■■□□□ 1.89
TNFRSF1A-216ENST00000543995 CECR2Q9BXF3 1484 aa26.78■■□□□ 1.88
TNFRSF1A-216ENST00000543995 DNAJC5BQ9UF47 199 aa26.7■■□□□ 1.86
TNFRSF1A-216ENST00000543995 CC2D2AQ9P2K1 1620 aa26.68■■□□□ 1.86
TNFRSF1A-216ENST00000543995 BAZ1AQ9NRL2 1556 aaPredicted RBP26.67■■□□□ 1.86
TNFRSF1A-216ENST00000543995 SMARCA4P51532 1647 aa26.65■■□□□ 1.86
TNFRSF1A-216ENST00000543995 MROH2BQ7Z745 1585 aa26.54■■□□□ 1.84
TNFRSF1A-216ENST00000543995 SMARCA2P51531 1590 aa26.4■■□□□ 1.82
TNFRSF1A-216ENST00000543995 ATAD2BQ9ULI0 1458 aa26.39■■□□□ 1.81
TNFRSF1A-216ENST00000543995 RSF1Q96T23 1441 aaPredicted RBP26.35■■□□□ 1.81
TNFRSF1A-216ENST00000543995 PEG3Q9GZU2 1588 aa26.34■■□□□ 1.81
TNFRSF1A-216ENST00000543995 WIZO95785 1651 aa26.31■■□□□ 1.8
TNFRSF1A-216ENST00000543995 NCAPD3P42695 1498 aa26.31■■□□□ 1.8
TNFRSF1A-216ENST00000543995 BAZ1BQ9UIG0 1483 aaKnown RBP26.23■■□□□ 1.79
TNFRSF1A-216ENST00000543995 HMGXB3Q12766 1538 aa26.23■■□□□ 1.79
TNFRSF1A-216ENST00000543995 SUPT5HO00267 1087 aaKnown RBP26.04■■□□□ 1.76
TNFRSF1A-216ENST00000543995 TOP2AP11388 1531 aaKnown RBP26.02■■□□□ 1.76
TNFRSF1A-216ENST00000543995 CCDC88BA6NC98 1476 aa25.71■■□□□ 1.71
TNFRSF1A-216ENST00000543995 NESP48681 1621 aa25.61■■□□□ 1.69
TNFRSF1A-216ENST00000543995 LAMC3Q9Y6N6 1575 aa25.59■■□□□ 1.69
TNFRSF1A-216ENST00000543995 CADPSQ9ULU8 1353 aa25.58■■□□□ 1.68
TNFRSF1A-216ENST00000543995 CFTRP13569 1480 aa25.5■■□□□ 1.67
TNFRSF1A-216ENST00000543995 PDS5BQ9NTI5 1447 aa25.41■■□□□ 1.66
TNFRSF1A-216ENST00000543995 ERCC6Q03468 1493 aa25.41■■□□□ 1.66
TNFRSF1A-216ENST00000543995 PRDM2Q13029 1718 aa25.4■■□□□ 1.66
TNFRSF1A-216ENST00000543995 KIF21AQ7Z4S6 1674 aa25.35■■□□□ 1.65
TNFRSF1A-216ENST00000543995 FANCD2Q9BXW9 1451 aa25.3■■□□□ 1.64
TNFRSF1A-216ENST00000543995 CEP164Q9UPV0 1460 aa25.25■■□□□ 1.63
TNFRSF1A-216ENST00000543995 THOC2Q8NI27 1593 aaKnown RBP25.13■■□□□ 1.61
TNFRSF1A-216ENST00000543995 MRC2Q9UBG0 1479 aa25.13■■□□□ 1.61
TNFRSF1A-216ENST00000543995 WDR62O43379 1518 aa25.02■■□□□ 1.6
TNFRSF1A-216ENST00000543995 URB2Q14146 1524 aaKnown RBP25.02■■□□□ 1.6
TNFRSF1A-216ENST00000543995 ABCC8Q09428 1581 aa24.95■■□□□ 1.59
TNFRSF1A-216ENST00000543995 CUX2O14529 1486 aa24.95■■□□□ 1.58
TNFRSF1A-216ENST00000543995 DNMBPQ6XZF7 1577 aa24.94■■□□□ 1.58
TNFRSF1A-216ENST00000543995 TOPBP1Q92547 1522 aa24.93■■□□□ 1.58
TNFRSF1A-216ENST00000543995 CUX1P39880 1505 aa24.88■■□□□ 1.57
TNFRSF1A-216ENST00000543995 WRNQ14191 1432 aaPredicted RBP eCLIP24.87■■□□□ 1.57
TNFRSF1A-216ENST00000543995 SYNJ1O43426 1573 aa24.79■■□□□ 1.56
TNFRSF1A-216ENST00000543995 TOP2BQ02880 1626 aa24.76■■□□□ 1.55
TNFRSF1A-216ENST00000543995 BIVM-ERCC5R4GMW8 1640 aa24.76■■□□□ 1.55
TNFRSF1A-216ENST00000543995 FGD5Q6ZNL6 1462 aa24.75■■□□□ 1.55
TNFRSF1A-216ENST00000543995 POLA1P09884 1462 aaPredicted RBP24.75■■□□□ 1.55
TNFRSF1A-216ENST00000543995 IFT140Q96RY7 1462 aa24.69■■□□□ 1.54
TNFRSF1A-216ENST00000543995 SOGA1O94964 1423 aa24.66■■□□□ 1.54
TNFRSF1A-216ENST00000543995 RAD54L2Q9Y4B4 1467 aa24.65■■□□□ 1.54
TNFRSF1A-216ENST00000543995 TARBP1Q13395 1621 aaKnown RBP24.63■■□□□ 1.53
TNFRSF1A-216ENST00000543995 TRIM41Q8WV44 630 aa24.57■■□□□ 1.52
TNFRSF1A-216ENST00000543995 ZNF608Q9ULD9 1512 aaPredicted RBP24.55■■□□□ 1.52
TNFRSF1A-216ENST00000543995 WDR97A6NE52 1622 aa24.53■■□□□ 1.52
TNFRSF1A-216ENST00000543995 ABCA10Q8WWZ4 1543 aa24.5■■□□□ 1.51
TNFRSF1A-216ENST00000543995 EIF4G3O43432 1585 aaKnown RBP24.49■■□□□ 1.51
TNFRSF1A-216ENST00000543995 TDRD9Q8NDG6 1382 aaKnown RBP24.48■■□□□ 1.51
TNFRSF1A-216ENST00000543995 AQRO60306 1485 aaKnown RBP eCLIP24.46■■□□□ 1.512e-6■■■■■ 30
TNFRSF1A-216ENST00000543995 CHIC1Q5VXU3 224 aa24.45■■□□□ 1.51
TNFRSF1A-216ENST00000543995 GAPVD1Q14C86 1478 aa24.39■■□□□ 1.5
TNFRSF1A-216ENST00000543995 ABCA5Q8WWZ7 1642 aa24.39■■□□□ 1.49
TNFRSF1A-216ENST00000543995 PBRM1Q86U86 1689 aa24.35■■□□□ 1.49
TNFRSF1A-216ENST00000543995 KIF27Q86VH2 1401 aa24.33■■□□□ 1.48
TNFRSF1A-216ENST00000543995 GRIN2BQ13224 1484 aa24.33■■□□□ 1.48
TNFRSF1A-216ENST00000543995 SNAPC4Q5SXM2 1469 aa24.26■■□□□ 1.47
TNFRSF1A-216ENST00000543995 ERICH3Q5RHP9 1530 aa24.23■■□□□ 1.47
TNFRSF1A-216ENST00000543995 MAGI1Q96QZ7 1491 aaPredicted RBP24.22■■□□□ 1.47
TNFRSF1A-216ENST00000543995 RUSC2Q8N2Y8 1516 aa24.21■■□□□ 1.47
TNFRSF1A-216ENST00000543995 FBLN2P98095 1184 aa24.16■■□□□ 1.46
TNFRSF1A-216ENST00000543995 IGF1RP08069 1367 aa24.14■■□□□ 1.46
TNFRSF1A-216ENST00000543995 CHD1O14646 1710 aa24.14■■□□□ 1.45
TNFRSF1A-216ENST00000543995 ADAMTS12P58397 1594 aa24.14■■□□□ 1.45
TNFRSF1A-216ENST00000543995 CHMP7Q8WUX9 453 aaPredicted RBP24.13■■□□□ 1.45
TNFRSF1A-216ENST00000543995 SYNJ2O15056 1496 aa24.12■■□□□ 1.45
TNFRSF1A-216ENST00000543995 CUL7Q14999 1698 aa24.11■■□□□ 1.45
TNFRSF1A-216ENST00000543995 FHAD1B1AJZ9 1412 aa24.1■■□□□ 1.45
TNFRSF1A-216ENST00000543995 EEA1Q15075 1411 aa24.08■■□□□ 1.45
TNFRSF1A-216ENST00000543995 FAM9AQ8IZU1 332 aaPredicted RBP24.08■■□□□ 1.45
TNFRSF1A-216ENST00000543995 CARMIL1Q5VZK9 1371 aa24.04■■□□□ 1.44
TNFRSF1A-216ENST00000543995 OSCARQ8IYS5 282 aa24.02■■□□□ 1.44
TNFRSF1A-216ENST00000543995 GRIN2AQ12879 1464 aa24.02■■□□□ 1.44
TNFRSF1A-216ENST00000543995 CSRNP3Q8WYN3 585 aa24.01■■□□□ 1.43
TNFRSF1A-216ENST00000543995 RAPGEF2Q9Y4G8 1499 aa23.94■■□□□ 1.42
TNFRSF1A-216ENST00000543995 PRXQ9BXM0 1461 aa23.91■■□□□ 1.42
TNFRSF1A-216ENST00000543995 CEP170Q5SW79 1584 aa23.88■■□□□ 1.41
TNFRSF1A-216ENST00000543995 NUP160Q12769 1436 aa23.86■■□□□ 1.41
TNFRSF1A-216ENST00000543995 CLASP1Q7Z460 1538 aa23.82■■□□□ 1.4
TNFRSF1A-216ENST00000543995 KIF21BO75037 1637 aa23.82■■□□□ 1.4
TNFRSF1A-216ENST00000543995 EHMT2Q96KQ7 1210 aa23.77■■□□□ 1.4
TNFRSF1A-216ENST00000543995 DNAJC5Q9H3Z4 198 aa23.76■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms