RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, humanhuman

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-209ENST00000542286 FHOD3Q2V2M9 1422 aa21.84■■□□□ 1.09
DDX55-209ENST00000542286 DNMBPQ6XZF7 1577 aa21.84■■□□□ 1.09
DDX55-209ENST00000542286 CCNB3Q8WWL7 1395 aa21.83■■□□□ 1.08
DDX55-209ENST00000542286 RRBP1Q9P2E9 1410 aaKnown RBP21.8■■□□□ 1.08
DDX55-209ENST00000542286 URB2Q14146 1524 aaKnown RBP21.8■■□□□ 1.08
DDX55-209ENST00000542286 MIER1Q8N108 512 aa21.78■■□□□ 1.08
DDX55-209ENST00000542286 FAM50AQ14320 339 aaKnown RBP21.77■■□□□ 1.08
DDX55-209ENST00000542286 ABCA10Q8WWZ4 1543 aa21.77■■□□□ 1.08
DDX55-209ENST00000542286 PHLDB1Q86UU1 1377 aa21.75■■□□□ 1.07
DDX55-209ENST00000542286 TIAM1Q13009 1591 aa21.74■■□□□ 1.07
DDX55-209ENST00000542286 PCF11O94913 1555 aaKnown RBP21.72■■□□□ 1.07
DDX55-209ENST00000542286 LRRC9Q6ZRR7 1453 aa21.7■■□□□ 1.06
DDX55-209ENST00000542286 RAB3GAP2Q9H2M9 1393 aa21.66■■□□□ 1.06
DDX55-209ENST00000542286 LAMC3Q9Y6N6 1575 aa21.64■■□□□ 1.05
DDX55-209ENST00000542286 KIF21AQ7Z4S6 1674 aa21.62■■□□□ 1.05
DDX55-209ENST00000542286 FHAD1B1AJZ9 1412 aa21.62■■□□□ 1.05
DDX55-209ENST00000542286 ARID3CA6NKF2 412 aa21.59■■□□□ 1.05
DDX55-209ENST00000542286 GAPVD1Q14C86 1478 aa21.59■■□□□ 1.05
DDX55-209ENST00000542286 PDS5BQ9NTI5 1447 aa21.59■■□□□ 1.05
DDX55-209ENST00000542286 SIN3AQ96ST3 1273 aa21.57■■□□□ 1.04
DDX55-209ENST00000542286 WDR97A6NE52 1622 aa21.55■■□□□ 1.04
DDX55-209ENST00000542286 CUL7Q14999 1698 aa21.54■■□□□ 1.04
DDX55-209ENST00000542286 CTTNBP2Q8WZ74 1663 aa21.53■■□□□ 1.04
DDX55-209ENST00000542286 AQRO60306 1485 aaKnown RBP eCLIP21.53■■□□□ 1.041e-6■■■■■ 42.9
DDX55-209ENST00000542286 CLSPNQ9HAW4 1339 aa21.52■■□□□ 1.04
DDX55-209ENST00000542286 MAP3K1Q13233 1512 aa21.52■■□□□ 1.03
DDX55-209ENST00000542286 CFAP43Q8NDM7 1665 aa21.51■■□□□ 1.03
DDX55-209ENST00000542286 ABCA5Q8WWZ7 1642 aa21.51■■□□□ 1.03
DDX55-209ENST00000542286 CASKIN1Q8WXD9 1431 aa21.5■■□□□ 1.03
DDX55-209ENST00000542286 SETD5Q9C0A6 1442 aa21.5■■□□□ 1.03
DDX55-209ENST00000542286 MAPKBP1O60336 1514 aa21.49■■□□□ 1.03
DDX55-209ENST00000542286 FYCO1Q9BQS8 1478 aa21.48■■□□□ 1.03
DDX55-209ENST00000542286 EFCAB5A4FU69 1503 aa21.46■■□□□ 1.03
DDX55-209ENST00000542286 MTUS2Q5JR59 1369 aa21.46■■□□□ 1.03
DDX55-209ENST00000542286 SNAPC4Q5SXM2 1469 aa21.45■■□□□ 1.02
DDX55-209ENST00000542286 HIRIP3Q9BW71 556 aaPredicted RBP21.42■■□□□ 1.02
DDX55-209ENST00000542286 FMN1Q68DA7 1419 aa21.42■■□□□ 1.02
DDX55-209ENST00000542286 TARBP1Q13395 1621 aaKnown RBP21.42■■□□□ 1.02
DDX55-209ENST00000542286 LRRIQ1Q96JM4 1722 aa21.41■■□□□ 1.02
DDX55-209ENST00000542286 PTPRKQ15262 1439 aa21.38■■□□□ 1.01
DDX55-209ENST00000542286 ZNF608Q9ULD9 1512 aaPredicted RBP21.37■■□□□ 1.01
DDX55-209ENST00000542286 FGD6Q6ZV73 1430 aa21.36■■□□□ 1.01
DDX55-209ENST00000542286 SAMD9Q5K651 1589 aa21.35■■□□□ 1.01
DDX55-209ENST00000542286 CHIC2Q9UKJ5 165 aa21.35■■□□□ 1.01
DDX55-209ENST00000542286 GRIN2BQ13224 1484 aa21.32■■□□□ 1
DDX55-209ENST00000542286 NCOA2Q15596 1464 aa21.31■■□□□ 1
DDX55-209ENST00000542286 KCNH8Q96L42 1107 aa21.31■■□□□ 1
DDX55-209ENST00000542286 MAGI3Q5TCQ9 1506 aa21.3■■□□□ 1
DDX55-209ENST00000542286 RRP7BPQ9NSQ0 103 aa21.29■■□□□ 1
DDX55-209ENST00000542286 PBRM1Q86U86 1689 aa21.29■■□□□ 1
DDX55-209ENST00000542286 MRC2Q9UBG0 1479 aa21.28■■□□□ 1
DDX55-209ENST00000542286 CDK13Q14004 1512 aaKnown RBP21.25■□□□□ 0.99
DDX55-209ENST00000542286 DDX10Q13206 875 aaKnown RBP21.23■□□□□ 0.99
DDX55-209ENST00000542286 FBLN2P98095 1184 aa21.22■□□□□ 0.99
DDX55-209ENST00000542286 MYOM3Q5VTT5 1437 aa21.22■□□□□ 0.99
DDX55-209ENST00000542286 CCDC18Q5T9S5 1454 aa21.21■□□□□ 0.99
DDX55-209ENST00000542286 ADAMTS12P58397 1594 aa21.21■□□□□ 0.99
DDX55-209ENST00000542286 IQGAP2Q13576 1575 aa21.2■□□□□ 0.98
DDX55-209ENST00000542286 NAIPQ13075 1403 aa21.16■□□□□ 0.98
DDX55-209ENST00000542286 SUPT6HQ7KZ85 1726 aaKnown RBP21.15■□□□□ 0.98
DDX55-209ENST00000542286 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.15■□□□□ 0.98
DDX55-209ENST00000542286 EPRSP07814 1512 aaKnown RBP21.14■□□□□ 0.98
DDX55-209ENST00000542286 PPP1R15AO75807 674 aaPredicted RBP21.14■□□□□ 0.97
DDX55-209ENST00000542286 EHBP1L1Q8N3D4 1523 aa21.13■□□□□ 0.97
DDX55-209ENST00000542286 FOXD1Q16676 465 aa21.13■□□□□ 0.97
DDX55-209ENST00000542286 PTPN23Q9H3S7 1636 aa21.13■□□□□ 0.97
DDX55-209ENST00000542286 HFM1A2PYH4 1435 aa21.13■□□□□ 0.97
DDX55-209ENST00000542286 TRIM52Q96A61 297 aa21.13■□□□□ 0.97
DDX55-209ENST00000542286 UGGT2Q9NYU1 1516 aa21.12■□□□□ 0.97
DDX55-209ENST00000542286 ERCC6Q03468 1493 aa21.12■□□□□ 0.97
DDX55-209ENST00000542286 ZNF644Q9H582 1327 aaPredicted RBP21.12■□□□□ 0.97
DDX55-209ENST00000542286 THOC2Q8NI27 1593 aaKnown RBP21.12■□□□□ 0.97
DDX55-209ENST00000542286 TONSLQ96HA7 1378 aa21.09■□□□□ 0.97
DDX55-209ENST00000542286 IFT140Q96RY7 1462 aa21.09■□□□□ 0.97
DDX55-209ENST00000542286 HECW1Q76N89 1606 aa21.07■□□□□ 0.96
DDX55-209ENST00000542286 KDM6BO15054 1643 aa21.06■□□□□ 0.96
DDX55-209ENST00000542286 CHMP7Q8WUX9 453 aaPredicted RBP21.06■□□□□ 0.96
DDX55-209ENST00000542286 UACAQ9BZF9 1416 aa21.06■□□□□ 0.96
DDX55-209ENST00000542286 WDR62O43379 1518 aa21.05■□□□□ 0.96
DDX55-209ENST00000542286 EIF4G3O43432 1585 aaKnown RBP21.05■□□□□ 0.96
DDX55-209ENST00000542286 DISP1Q96F81 1524 aa21.05■□□□□ 0.96
DDX55-209ENST00000542286 ARHGEF11O15085 1522 aa21.04■□□□□ 0.96
DDX55-209ENST00000542286 GRIN2AQ12879 1464 aa21.01■□□□□ 0.95
DDX55-209ENST00000542286 KIAA0586Q9BVV6 1533 aa20.99■□□□□ 0.95
DDX55-209ENST00000542286 ZNF777Q9ULD5 760 aaPredicted RBP20.98■□□□□ 0.95
DDX55-209ENST00000542286 NUP153P49790 1475 aaKnown RBP20.98■□□□□ 0.95
DDX55-209ENST00000542286 KIAA0556O60303 1618 aa20.98■□□□□ 0.95
DDX55-209ENST00000542286 DENND4BO75064 1496 aaPredicted RBP20.97■□□□□ 0.95
DDX55-209ENST00000542286 PLB1Q6P1J6 1458 aa20.96■□□□□ 0.95
DDX55-209ENST00000542286 PRG4Q92954 1404 aaPredicted RBP20.96■□□□□ 0.95
DDX55-209ENST00000542286 TIMELESSQ9UNS1 1208 aa20.94■□□□□ 0.94
DDX55-209ENST00000542286 TCOF1Q13428 1488 aaKnown RBP20.93■□□□□ 0.94
DDX55-209ENST00000542286 MPHOSPH9Q99550 1183 aa20.93■□□□□ 0.94
DDX55-209ENST00000542286 CEP170Q5SW79 1584 aa20.91■□□□□ 0.94
DDX55-209ENST00000542286 SUPT16HQ9Y5B9 1047 aaKnown RBP20.91■□□□□ 0.94
DDX55-209ENST00000542286 JPH4Q96JJ6 628 aa20.89■□□□□ 0.93
DDX55-209ENST00000542286 KDM5BQ9UGL1 1544 aa20.88■□□□□ 0.93
DDX55-209ENST00000542286 RAPGEF6Q8TEU7 1601 aa20.87■□□□□ 0.93
DDX55-209ENST00000542286 ABCC5O15440 1437 aa20.86■□□□□ 0.93
DDX55-209ENST00000542286 DAPK1P53355 1430 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms