RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, humanhuman

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-209ENST00000542286 NISCHQ9Y2I1 1504 aa30.99■■■□□ 2.55
DDX55-209ENST00000542286 SHROOM4Q9ULL8 1493 aa26.74■■□□□ 1.87
DDX55-209ENST00000542286 DCAF8L2P0C7V8 631 aa26.24■■□□□ 1.79
DDX55-209ENST00000542286 CCDC180Q9P1Z9 1646 aa26.23■■□□□ 1.79
DDX55-209ENST00000542286 ZCCHC6Q5VYS8 1495 aaKnown RBP26.14■■□□□ 1.78
DDX55-209ENST00000542286 SUPT5HO00267 1087 aaKnown RBP26.08■■□□□ 1.77
DDX55-209ENST00000542286 DCAF1Q9Y4B6 1507 aa25.19■■□□□ 1.62
DDX55-209ENST00000542286 CHIC1Q5VXU3 224 aa25.08■■□□□ 1.61
DDX55-209ENST00000542286 MYO15BQ96JP2 1530 aa25.02■■□□□ 1.6
DDX55-209ENST00000542286 SCRIBQ14160 1630 aa24.92■■□□□ 1.58
DDX55-209ENST00000542286 ABCC9O60706 1549 aa24.92■■□□□ 1.58
DDX55-209ENST00000542286 RSF1Q96T23 1441 aaPredicted RBP24.54■■□□□ 1.52
DDX55-209ENST00000542286 LOC105371045A0A1W2PR82 267 aa24.54■■□□□ 1.52
DDX55-209ENST00000542286 CECR2Q9BXF3 1484 aa24.39■■□□□ 1.5
DDX55-209ENST00000542286 NACADO15069 1562 aa24.36■■□□□ 1.49
DDX55-209ENST00000542286 RB1CC1Q8TDY2 1594 aa24.31■■□□□ 1.48
DDX55-209ENST00000542286 PCGF6Q9BYE7 350 aa24.24■■□□□ 1.47
DDX55-209ENST00000542286 MROH2BQ7Z745 1585 aa24.21■■□□□ 1.47
DDX55-209ENST00000542286 FAM9AQ8IZU1 332 aaPredicted RBP24.2■■□□□ 1.46
DDX55-209ENST00000542286 EHMT2Q96KQ7 1210 aa24.2■■□□□ 1.46
DDX55-209ENST00000542286 TRIM41Q8WV44 630 aa24.14■■□□□ 1.45
DDX55-209ENST00000542286 WIZO95785 1651 aa24.08■■□□□ 1.45
DDX55-209ENST00000542286 HRCP23327 699 aa23.99■■□□□ 1.43
DDX55-209ENST00000542286 PABPN1Q86U42 306 aaKnown RBP eCLIP23.93■■□□□ 1.42
DDX55-209ENST00000542286 UNC13AQ9UPW8 1703 aa23.81■■□□□ 1.4
DDX55-209ENST00000542286 PPARGC1BQ86YN6 1023 aaKnown RBP23.78■■□□□ 1.4
DDX55-209ENST00000542286 BAZ1AQ9NRL2 1556 aaPredicted RBP23.76■■□□□ 1.39
DDX55-209ENST00000542286 SMARCA4P51532 1647 aa23.64■■□□□ 1.38
DDX55-209ENST00000542286 TRIM26Q12899 539 aaPredicted RBP23.58■■□□□ 1.37
DDX55-209ENST00000542286 CCDC88BA6NC98 1476 aa23.56■■□□□ 1.36
DDX55-209ENST00000542286 ABCC8Q09428 1581 aa23.56■■□□□ 1.36
DDX55-209ENST00000542286 BICRAQ9NZM4 1560 aa23.53■■□□□ 1.36
DDX55-209ENST00000542286 TOP2AP11388 1531 aaKnown RBP23.53■■□□□ 1.36
DDX55-209ENST00000542286 EIF4G1Q04637 1599 aaKnown RBP23.5■■□□□ 1.35
DDX55-209ENST00000542286 SMARCA2P51531 1590 aa23.47■■□□□ 1.35
DDX55-209ENST00000542286 TTBK1Q5TCY1 1321 aaPredicted RBP23.31■■□□□ 1.32
DDX55-209ENST00000542286 SOGA1O94964 1423 aa23.3■■□□□ 1.32
DDX55-209ENST00000542286 RUSC2Q8N2Y8 1516 aa23.24■■□□□ 1.31
DDX55-209ENST00000542286 ATAD2BQ9ULI0 1458 aa23.13■■□□□ 1.29
DDX55-209ENST00000542286 PELP1Q8IZL8 1130 aaKnown RBP23.11■■□□□ 1.29
DDX55-209ENST00000542286 UBTFP17480 764 aaKnown RBP23.08■■□□□ 1.29
DDX55-209ENST00000542286 BAZ1BQ9UIG0 1483 aaKnown RBP23.07■■□□□ 1.28
DDX55-209ENST00000542286 CSRNP3Q8WYN3 585 aa23.06■■□□□ 1.28
DDX55-209ENST00000542286 WRNQ14191 1432 aaPredicted RBP eCLIP23.04■■□□□ 1.28
DDX55-209ENST00000542286 PEG3Q9GZU2 1588 aa23.04■■□□□ 1.28
DDX55-209ENST00000542286 CEP162Q5TB80 1403 aa22.99■■□□□ 1.27
DDX55-209ENST00000542286 SYNJ1O43426 1573 aa22.98■■□□□ 1.27
DDX55-209ENST00000542286 RANGAP1P46060 587 aaPredicted RBP22.96■■□□□ 1.27
DDX55-209ENST00000542286 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.95■■□□□ 1.27
DDX55-209ENST00000542286 TNIKQ9UKE5 1360 aa22.86■■□□□ 1.25
DDX55-209ENST00000542286 ZEB1P37275 1124 aaPredicted RBP22.79■■□□□ 1.24
DDX55-209ENST00000542286 EEA1Q15075 1411 aa22.78■■□□□ 1.24
DDX55-209ENST00000542286 GOLGA3Q08378 1498 aa22.78■■□□□ 1.24
DDX55-209ENST00000542286 CCER1Q8TC90 406 aaPredicted RBP22.75■■□□□ 1.23
DDX55-209ENST00000542286 RAPGEF2Q9Y4G8 1499 aa22.69■■□□□ 1.22
DDX55-209ENST00000542286 SCAF1Q9H7N4 1312 aaKnown RBP22.68■■□□□ 1.22
DDX55-209ENST00000542286 CEP164Q9UPV0 1460 aa22.64■■□□□ 1.22
DDX55-209ENST00000542286 NCAPD3P42695 1498 aa22.61■■□□□ 1.21
DDX55-209ENST00000542286 CLIP1P30622 1438 aa22.6■■□□□ 1.21
DDX55-209ENST00000542286 TOP2BQ02880 1626 aa22.57■■□□□ 1.2
DDX55-209ENST00000542286 KIF21BO75037 1637 aa22.55■■□□□ 1.2
DDX55-209ENST00000542286 HNRNPUL2Q1KMD3 747 aaKnown RBP22.54■■□□□ 1.2
DDX55-209ENST00000542286 HMGXB3Q12766 1538 aa22.53■■□□□ 1.2
DDX55-209ENST00000542286 CUX1P39880 1505 aa22.52■■□□□ 1.2
DDX55-209ENST00000542286 BIVM-ERCC5R4GMW8 1640 aa22.44■■□□□ 1.18
DDX55-209ENST00000542286 CFTRP13569 1480 aa22.42■■□□□ 1.18
DDX55-209ENST00000542286 VPS8Q8N3P4 1428 aa22.4■■□□□ 1.18
DDX55-209ENST00000542286 APLP2Q06481 763 aa22.39■■□□□ 1.17
DDX55-209ENST00000542286 PRXQ9BXM0 1461 aa22.33■■□□□ 1.17
DDX55-209ENST00000542286 KIF27Q86VH2 1401 aa22.3■■□□□ 1.16
DDX55-209ENST00000542286 KANK4Q5T7N3 995 aaPredicted RBP22.29■■□□□ 1.16
DDX55-209ENST00000542286 CC2D2AQ9P2K1 1620 aa22.29■■□□□ 1.16
DDX55-209ENST00000542286 CADPSQ9ULU8 1353 aa22.26■■□□□ 1.15
DDX55-209ENST00000542286 ARAP1Q96P48 1450 aa22.25■■□□□ 1.15
DDX55-209ENST00000542286 CUX2O14529 1486 aa22.24■■□□□ 1.15
DDX55-209ENST00000542286 MYT1Q01538 1121 aa22.2■■□□□ 1.14
DDX55-209ENST00000542286 ERICH3Q5RHP9 1530 aa22.2■■□□□ 1.14
DDX55-209ENST00000542286 DNAJC5BQ9UF47 199 aa22.19■■□□□ 1.14
DDX55-209ENST00000542286 NESP48681 1621 aa22.17■■□□□ 1.14
DDX55-209ENST00000542286 FGD5Q6ZNL6 1462 aa22.16■■□□□ 1.14
DDX55-209ENST00000542286 IGF1RP08069 1367 aa22.15■■□□□ 1.14
DDX55-209ENST00000542286 ACIN1Q9UKV3 1341 aaKnown RBP22.15■■□□□ 1.14
DDX55-209ENST00000542286 DIEXFQ68CQ4 756 aaKnown RBP22.14■■□□□ 1.14
DDX55-209ENST00000542286 P3H3Q8IVL6 736 aa22.13■■□□□ 1.13
DDX55-209ENST00000542286 ITGAEP38570 1179 aa22.1■■□□□ 1.13
DDX55-209ENST00000542286 ARHGAP35Q9NRY4 1499 aa22.1■■□□□ 1.13
DDX55-209ENST00000542286 FANCD2Q9BXW9 1451 aa22.08■■□□□ 1.13
DDX55-209ENST00000542286 NEUROD1Q13562 356 aa22.08■■□□□ 1.13
DDX55-209ENST00000542286 RAD54L2Q9Y4B4 1467 aa22.08■■□□□ 1.12
DDX55-209ENST00000542286 PRDM2Q13029 1718 aa22.07■■□□□ 1.12
DDX55-209ENST00000542286 CARMIL1Q5VZK9 1371 aa22.05■■□□□ 1.12
DDX55-209ENST00000542286 ATP1B4Q9UN42 357 aaPredicted RBP22.02■■□□□ 1.12
DDX55-209ENST00000542286 ZNF316A6NFI3 1004 aaPredicted RBP21.97■■□□□ 1.11
DDX55-209ENST00000542286 GTF3C3Q9Y5Q9 886 aa21.96■■□□□ 1.11
DDX55-209ENST00000542286 POLA1P09884 1462 aaPredicted RBP21.91■■□□□ 1.1
DDX55-209ENST00000542286 TOPBP1Q92547 1522 aa21.9■■□□□ 1.1
DDX55-209ENST00000542286 CENPBP07199 599 aaPredicted RBP21.87■■□□□ 1.09
DDX55-209ENST00000542286 DHX57Q6P158 1386 aaKnown RBP21.85■■□□□ 1.09
DDX55-209ENST00000542286 TDRD9Q8NDG6 1382 aaKnown RBP21.85■■□□□ 1.09
DDX55-209ENST00000542286 YTHDC1Q96MU7 727 aaKnown RBP21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms