RNA–Protein interactions for RNA: ENST00000540090.5

LPCAT3-210, Transcript of lysophosphatidylcholine acyltransferase 3, humanhuman

TSL 1 (best)

Gene LPCAT3, Length 974 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LPCAT3-210ENST00000540090 NPM1P06748 294 aaKnown RBP eCLIP35.33■■■■□ 3.25
LPCAT3-210ENST00000540090 KIF13AQ9H1H9 1805 aa35.31■■■■□ 3.24
LPCAT3-210ENST00000540090 IGF1RP08069 1367 aa35.29■■■■□ 3.24
LPCAT3-210ENST00000540090 FAM69CQ0P6D2 419 aa35.29■■■■□ 3.24
LPCAT3-210ENST00000540090 ABCC10Q5T3U5 1492 aa35.26■■■■□ 3.23
LPCAT3-210ENST00000540090 KIAA0586Q9BVV6 1533 aa35.23■■■■□ 3.23
LPCAT3-210ENST00000540090 KIF27Q86VH2 1401 aa35.2■■■■□ 3.23
LPCAT3-210ENST00000540090 MAPKBP1O60336 1514 aa35.19■■■■□ 3.22
LPCAT3-210ENST00000540090 ADCY10Q96PN6 1610 aa35.13■■■■□ 3.21
LPCAT3-210ENST00000540090 DIP2BQ9P265 1576 aa35.07■■■■□ 3.2
LPCAT3-210ENST00000540090 CUL7Q14999 1698 aa35.06■■■■□ 3.2
LPCAT3-210ENST00000540090 CARMIL1Q5VZK9 1371 aa35.02■■■■□ 3.2
LPCAT3-210ENST00000540090 PTPRGP23470 1445 aa35■■■■□ 3.19
LPCAT3-210ENST00000540090 TNIKQ9UKE5 1360 aa34.9■■■■□ 3.18
LPCAT3-210ENST00000540090 CARMIL2Q6F5E8 1435 aa34.89■■■■□ 3.18
LPCAT3-210ENST00000540090 TTBK1Q5TCY1 1321 aaPredicted RBP34.88■■■■□ 3.17
LPCAT3-210ENST00000540090 KDM6BO15054 1643 aa34.84■■■■□ 3.17
LPCAT3-210ENST00000540090 KDM4FA0A1W2PPD8 638 aa34.82■■■■□ 3.16
LPCAT3-210ENST00000540090 ABCC2Q92887 1545 aa34.81■■■■□ 3.16
LPCAT3-210ENST00000540090 TSPOAP1O95153 1857 aa34.77■■■■□ 3.16
LPCAT3-210ENST00000540090 IQGAP2Q13576 1575 aa34.75■■■■□ 3.15
LPCAT3-210ENST00000540090 ASXL2Q76L83 1435 aa34.74■■■■□ 3.15
LPCAT3-210ENST00000540090 PLB1Q6P1J6 1458 aa34.74■■■■□ 3.15
LPCAT3-210ENST00000540090 UHRF1BP1LA0JNW5 1464 aa34.73■■■■□ 3.15
LPCAT3-210ENST00000540090 UACAQ9BZF9 1416 aa34.71■■■■□ 3.15
LPCAT3-210ENST00000540090 DISP1Q96F81 1524 aa34.68■■■■□ 3.14
LPCAT3-210ENST00000540090 GLI2P10070 1586 aa34.66■■■■□ 3.14
LPCAT3-210ENST00000540090 RAPGEF2Q9Y4G8 1499 aa34.62■■■■□ 3.13
LPCAT3-210ENST00000540090 UGGT2Q9NYU1 1516 aa34.58■■■■□ 3.13
LPCAT3-210ENST00000540090 KDM5BQ9UGL1 1544 aa34.57■■■■□ 3.12
LPCAT3-210ENST00000540090 PPRC1Q5VV67 1664 aaKnown RBP34.54■■■■□ 3.12
LPCAT3-210ENST00000540090 EPRSP07814 1512 aaKnown RBP34.53■■■■□ 3.12
LPCAT3-210ENST00000540090 COL17A1Q9UMD9 1497 aaPredicted RBP34.47■■■■□ 3.11
LPCAT3-210ENST00000540090 KIAA0556O60303 1618 aa34.44■■■■□ 3.1
LPCAT3-210ENST00000540090 MAP3K4Q9Y6R4 1608 aa34.4■■■■□ 3.1
LPCAT3-210ENST00000540090 TEX14Q8IWB6 1497 aa34.39■■■■□ 3.1
LPCAT3-210ENST00000540090 ZCCHC11Q5TAX3 1644 aaKnown RBP34.39■■■■□ 3.1
LPCAT3-210ENST00000540090 ADGRL1O94910 1474 aa34.34■■■■□ 3.09
LPCAT3-210ENST00000540090 WDR7Q9Y4E6 1490 aa34.33■■■■□ 3.09
LPCAT3-210ENST00000540090 GOLGA3Q08378 1498 aa34.27■■■■□ 3.08
LPCAT3-210ENST00000540090 KCNH8Q96L42 1107 aa34.21■■■■□ 3.07
LPCAT3-210ENST00000540090 CD109Q6YHK3 1445 aa34.21■■■■□ 3.07
LPCAT3-210ENST00000540090 PRXQ9BXM0 1461 aa34.2■■■■□ 3.06
LPCAT3-210ENST00000540090 ABCA8O94911 1581 aa34.19■■■■□ 3.06
LPCAT3-210ENST00000540090 MAGI3Q5TCQ9 1506 aa34.18■■■■□ 3.06
LPCAT3-210ENST00000540090 CTTNBP2Q8WZ74 1663 aa34.18■■■■□ 3.06
LPCAT3-210ENST00000540090 ILDR1Q86SU0 546 aaPredicted RBP34.1■■■■□ 3.05
LPCAT3-210ENST00000540090 CFAP43Q8NDM7 1665 aa34.06■■■■□ 3.04
LPCAT3-210ENST00000540090 FAM9AQ8IZU1 332 aaPredicted RBP34.04■■■■□ 3.04
LPCAT3-210ENST00000540090 P3H3Q8IVL6 736 aa34■■■■□ 3.03
LPCAT3-210ENST00000540090 ATP10BO94823 1461 aa33.97■■■■□ 3.03
LPCAT3-210ENST00000540090 ARID3CA6NKF2 412 aa33.96■■■■□ 3.03
LPCAT3-210ENST00000540090 HECW2Q9P2P5 1572 aa33.95■■■■□ 3.03
LPCAT3-210ENST00000540090 ARAP3Q8WWN8 1544 aa33.92■■■■□ 3.02
LPCAT3-210ENST00000540090 CSRNP3Q8WYN3 585 aa33.9■■■■□ 3.02
LPCAT3-210ENST00000540090 PHLDB1Q86UU1 1377 aa33.86■■■■□ 3.01
LPCAT3-210ENST00000540090 ABCA9Q8IUA7 1624 aa33.78■■■■□ 3
LPCAT3-210ENST00000540090 SAMD9Q5K651 1589 aa33.77■■■■□ 3
LPCAT3-210ENST00000540090 KIF21BO75037 1637 aa33.77■■■■□ 3
LPCAT3-210ENST00000540090 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.75■■■□□ 2.99
LPCAT3-210ENST00000540090 RAPGEF3O95398 923 aa33.75■■■□□ 2.99
LPCAT3-210ENST00000540090 HNRNPUL2Q1KMD3 747 aaKnown RBP33.75■■■□□ 2.99
LPCAT3-210ENST00000540090 NEO1Q92859 1461 aa33.71■■■□□ 2.99
LPCAT3-210ENST00000540090 RAPGEF6Q8TEU7 1601 aa33.71■■■□□ 2.99
LPCAT3-210ENST00000540090 NUP153P49790 1475 aaKnown RBP33.65■■■□□ 2.98
LPCAT3-210ENST00000540090 RANGAP1P46060 587 aaPredicted RBP33.62■■■□□ 2.97
LPCAT3-210ENST00000540090 EEA1Q15075 1411 aa33.62■■■□□ 2.97
LPCAT3-210ENST00000540090 PLEKHD1A6NEE1 506 aa33.6■■■□□ 2.97
LPCAT3-210ENST00000540090 PTPRMP28827 1452 aa33.6■■■□□ 2.97
LPCAT3-210ENST00000540090 FHOD3Q2V2M9 1422 aa33.59■■■□□ 2.97
LPCAT3-210ENST00000540090 ADAMTSL3P82987 1691 aa33.58■■■□□ 2.97
LPCAT3-210ENST00000540090 ARID4BQ4LE39 1312 aaPredicted RBP33.53■■■□□ 2.96
LPCAT3-210ENST00000540090 FRMPD1Q5SYB0 1578 aa33.52■■■□□ 2.96
LPCAT3-210ENST00000540090 DENND4BO75064 1496 aaPredicted RBP33.48■■■□□ 2.95
LPCAT3-210ENST00000540090 AKNAQ7Z591 1439 aa33.47■■■□□ 2.95
LPCAT3-210ENST00000540090 BCORL1Q5H9F3 1711 aa33.45■■■□□ 2.94
LPCAT3-210ENST00000540090 FANCAO15360 1455 aa33.42■■■□□ 2.94
LPCAT3-210ENST00000540090 FBXO41Q8TF61 875 aa33.41■■■□□ 2.94
LPCAT3-210ENST00000540090 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP33.39■■■□□ 2.94
LPCAT3-210ENST00000540090 MADDQ8WXG6 1647 aa33.38■■■□□ 2.93
LPCAT3-210ENST00000540090 EFCAB5A4FU69 1503 aa33.38■■■□□ 2.93
LPCAT3-210ENST00000540090 ARHGEF40Q8TER5 1519 aa33.37■■■□□ 2.93
LPCAT3-210ENST00000540090 RICTORQ6R327 1708 aa33.34■■■□□ 2.93
LPCAT3-210ENST00000540090 PCF11O94913 1555 aaKnown RBP33.32■■■□□ 2.92
LPCAT3-210ENST00000540090 LMTK3Q96Q04 1460 aa33.31■■■□□ 2.92
LPCAT3-210ENST00000540090 CFAP74Q9C0B2 1584 aa33.31■■■□□ 2.92
LPCAT3-210ENST00000540090 TTC37Q6PGP7 1564 aa33.29■■■□□ 2.92
LPCAT3-210ENST00000540090 ZMYM4Q5VZL5 1548 aa33.28■■■□□ 2.92
LPCAT3-210ENST00000540090 POGZQ7Z3K3 1410 aa33.28■■■□□ 2.92
LPCAT3-210ENST00000540090 YEATS2Q9ULM3 1422 aa33.27■■■□□ 2.92
LPCAT3-210ENST00000540090 MAGI2Q86UL8 1455 aa33.26■■■□□ 2.92
LPCAT3-210ENST00000540090 CDK13Q14004 1512 aaKnown RBP33.25■■■□□ 2.91
LPCAT3-210ENST00000540090 PLCH2O75038 1416 aa33.25■■■□□ 2.91
LPCAT3-210ENST00000540090 ZFYVE16Q7Z3T8 1539 aa33.23■■■□□ 2.91
LPCAT3-210ENST00000540090 RIMS1Q86UR5 1692 aaKnown RBP33.22■■■□□ 2.91
LPCAT3-210ENST00000540090 SCAPERQ9BY12 1400 aa33.21■■■□□ 2.91
LPCAT3-210ENST00000540090 UBTFP17480 764 aaKnown RBP33.19■■■□□ 2.9
LPCAT3-210ENST00000540090 HSPA2P54652 639 aa33.18■■■□□ 2.9
LPCAT3-210ENST00000540090 PLPPR3Q6T4P5 718 aa33.17■■■□□ 2.9
LPCAT3-210ENST00000540090 ATP1B4Q9UN42 357 aaPredicted RBP33.17■■■□□ 2.9
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms