RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 EHMT2Q96KQ7 1210 aa30.97■■■□□ 2.55
TNFRSF1A-213ENST00000540022 RAPGEF2Q9Y4G8 1499 aa30.96■■■□□ 2.55
TNFRSF1A-213ENST00000540022 KIF21BO75037 1637 aa30.95■■■□□ 2.55
TNFRSF1A-213ENST00000540022 CEP170Q5SW79 1584 aa30.94■■■□□ 2.54
TNFRSF1A-213ENST00000540022 CYB5RLQ6IPT4 315 aa30.93■■■□□ 2.54
TNFRSF1A-213ENST00000540022 NUP160Q12769 1436 aa30.92■■■□□ 2.54
TNFRSF1A-213ENST00000540022 LOC105371045A0A1W2PR82 267 aa30.91■■■□□ 2.54
TNFRSF1A-213ENST00000540022 GOLGA3Q08378 1498 aa30.87■■■□□ 2.53
TNFRSF1A-213ENST00000540022 UBTFP17480 764 aaKnown RBP30.77■■■□□ 2.52
TNFRSF1A-213ENST00000540022 SHROOM2Q13796 1616 aa30.77■■■□□ 2.52
TNFRSF1A-213ENST00000540022 ERCC6L2Q5T890 1561 aa30.74■■■□□ 2.51
TNFRSF1A-213ENST00000540022 TNIKQ9UKE5 1360 aa30.65■■■□□ 2.5
TNFRSF1A-213ENST00000540022 KIAA0586Q9BVV6 1533 aa30.62■■■□□ 2.49
TNFRSF1A-213ENST00000540022 JPH4Q96JJ6 628 aa30.57■■■□□ 2.48
TNFRSF1A-213ENST00000540022 PRG4Q92954 1404 aaPredicted RBP30.54■■■□□ 2.48
TNFRSF1A-213ENST00000540022 CTTNBP2Q8WZ74 1663 aa30.52■■■□□ 2.48
TNFRSF1A-213ENST00000540022 IQGAP2Q13576 1575 aa30.5■■■□□ 2.47
TNFRSF1A-213ENST00000540022 RANGAP1P46060 587 aaPredicted RBP30.47■■■□□ 2.47
TNFRSF1A-213ENST00000540022 CEP162Q5TB80 1403 aa30.42■■■□□ 2.46
TNFRSF1A-213ENST00000540022 TRHP20396 242 aaPredicted RBP30.38■■■□□ 2.45
TNFRSF1A-213ENST00000540022 UGGT2Q9NYU1 1516 aa30.36■■■□□ 2.45
TNFRSF1A-213ENST00000540022 CLIP1P30622 1438 aa30.36■■■□□ 2.45
TNFRSF1A-213ENST00000540022 DISP1Q96F81 1524 aa30.33■■■□□ 2.45
TNFRSF1A-213ENST00000540022 ARHGAP35Q9NRY4 1499 aa30.29■■■□□ 2.44
TNFRSF1A-213ENST00000540022 P3H3Q8IVL6 736 aa30.25■■■□□ 2.43
TNFRSF1A-213ENST00000540022 SAMD9Q5K651 1589 aa30.24■■■□□ 2.43
TNFRSF1A-213ENST00000540022 EFCAB5A4FU69 1503 aa30.24■■■□□ 2.43
TNFRSF1A-213ENST00000540022 CARMIL2Q6F5E8 1435 aa30.24■■■□□ 2.43
TNFRSF1A-213ENST00000540022 KIAA0556O60303 1618 aa30.23■■■□□ 2.43
TNFRSF1A-213ENST00000540022 TTBK1Q5TCY1 1321 aaPredicted RBP30.21■■■□□ 2.43
TNFRSF1A-213ENST00000540022 ADCY10Q96PN6 1610 aa30.19■■■□□ 2.42
TNFRSF1A-213ENST00000540022 FHOD3Q2V2M9 1422 aa30.18■■■□□ 2.42
TNFRSF1A-213ENST00000540022 PTPRGP23470 1445 aa30.12■■■□□ 2.41
TNFRSF1A-213ENST00000540022 KIF13AQ9H1H9 1805 aa30.09■■■□□ 2.41
TNFRSF1A-213ENST00000540022 MAPKBP1O60336 1514 aa30.04■■■□□ 2.4
TNFRSF1A-213ENST00000540022 NPM1P06748 294 aaKnown RBP eCLIP30.01■■■□□ 2.4
TNFRSF1A-213ENST00000540022 VPS8Q8N3P4 1428 aa29.99■■■□□ 2.39
TNFRSF1A-213ENST00000540022 FMN1Q68DA7 1419 aa29.98■■■□□ 2.39
TNFRSF1A-213ENST00000540022 PLB1Q6P1J6 1458 aa29.96■■■□□ 2.39
TNFRSF1A-213ENST00000540022 UHRF1BP1LA0JNW5 1464 aa29.93■■■□□ 2.38
TNFRSF1A-213ENST00000540022 ABCC2Q92887 1545 aa29.93■■■□□ 2.38
TNFRSF1A-213ENST00000540022 ABCC10Q5T3U5 1492 aa29.93■■■□□ 2.38
TNFRSF1A-213ENST00000540022 UACAQ9BZF9 1416 aa29.92■■■□□ 2.38
TNFRSF1A-213ENST00000540022 DIP2BQ9P265 1576 aa29.9■■■□□ 2.38
TNFRSF1A-213ENST00000540022 ABCA8O94911 1581 aa29.88■■■□□ 2.37
TNFRSF1A-213ENST00000540022 CASKIN1Q8WXD9 1431 aa29.86■■■□□ 2.37
TNFRSF1A-213ENST00000540022 PCF11O94913 1555 aaKnown RBP29.85■■■□□ 2.37
TNFRSF1A-213ENST00000540022 FAM69CQ0P6D2 419 aa29.83■■■□□ 2.37
TNFRSF1A-213ENST00000540022 ATP1B4Q9UN42 357 aaPredicted RBP29.81■■■□□ 2.36
TNFRSF1A-213ENST00000540022 KDM5BQ9UGL1 1544 aa29.81■■■□□ 2.36
TNFRSF1A-213ENST00000540022 FYCO1Q9BQS8 1478 aa29.8■■■□□ 2.36
TNFRSF1A-213ENST00000540022 ARID3CA6NKF2 412 aa29.79■■■□□ 2.36
TNFRSF1A-213ENST00000540022 ZCCHC11Q5TAX3 1644 aaKnown RBP29.78■■■□□ 2.36
TNFRSF1A-213ENST00000540022 RAPGEF6Q8TEU7 1601 aa29.78■■■□□ 2.36
TNFRSF1A-213ENST00000540022 ASXL2Q76L83 1435 aa29.77■■■□□ 2.36
TNFRSF1A-213ENST00000540022 NUP153P49790 1475 aaKnown RBP29.74■■■□□ 2.35
TNFRSF1A-213ENST00000540022 TSPOAP1O95153 1857 aa29.73■■■□□ 2.35
TNFRSF1A-213ENST00000540022 HECW1Q76N89 1606 aa29.72■■■□□ 2.35
TNFRSF1A-213ENST00000540022 ATP10BO94823 1461 aa29.68■■■□□ 2.34
TNFRSF1A-213ENST00000540022 EPRSP07814 1512 aaKnown RBP29.66■■■□□ 2.34
TNFRSF1A-213ENST00000540022 GLI2P10070 1586 aa29.66■■■□□ 2.34
TNFRSF1A-213ENST00000540022 APLP2Q06481 763 aa29.64■■■□□ 2.34
TNFRSF1A-213ENST00000540022 CDK13Q14004 1512 aaKnown RBP29.62■■■□□ 2.33
TNFRSF1A-213ENST00000540022 CCDC18Q5T9S5 1454 aa29.61■■■□□ 2.33
TNFRSF1A-213ENST00000540022 LRRIQ1Q96JM4 1722 aa29.61■■■□□ 2.33
TNFRSF1A-213ENST00000540022 PPRC1Q5VV67 1664 aaKnown RBP29.59■■■□□ 2.33
TNFRSF1A-213ENST00000540022 MAP3K1Q13233 1512 aa29.58■■■□□ 2.33
TNFRSF1A-213ENST00000540022 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.58■■■□□ 2.33
TNFRSF1A-213ENST00000540022 HNRNPUL2Q1KMD3 747 aaKnown RBP29.58■■■□□ 2.33
TNFRSF1A-213ENST00000540022 TIAM1Q13009 1591 aa29.58■■■□□ 2.33
TNFRSF1A-213ENST00000540022 WDR7Q9Y4E6 1490 aa29.57■■■□□ 2.32
TNFRSF1A-213ENST00000540022 MAP3K4Q9Y6R4 1608 aa29.55■■■□□ 2.32
TNFRSF1A-213ENST00000540022 KANK4Q5T7N3 995 aaPredicted RBP29.53■■■□□ 2.32
TNFRSF1A-213ENST00000540022 CFAP43Q8NDM7 1665 aa29.52■■■□□ 2.32
TNFRSF1A-213ENST00000540022 PPARGC1BQ86YN6 1023 aaKnown RBP29.5■■■□□ 2.31
TNFRSF1A-213ENST00000540022 KDM6BO15054 1643 aa29.49■■■□□ 2.31
TNFRSF1A-213ENST00000540022 LRRC9Q6ZRR7 1453 aa29.46■■■□□ 2.31
TNFRSF1A-213ENST00000540022 MAGI3Q5TCQ9 1506 aa29.46■■■□□ 2.31
TNFRSF1A-213ENST00000540022 CDK11AQ9UQ88 783 aaPredicted RBP29.45■■■□□ 2.31
TNFRSF1A-213ENST00000540022 KCNH8Q96L42 1107 aa29.43■■■□□ 2.3
TNFRSF1A-213ENST00000540022 MTUS2Q5JR59 1369 aa29.43■■■□□ 2.3
TNFRSF1A-213ENST00000540022 PLEKHD1A6NEE1 506 aa29.42■■■□□ 2.3
TNFRSF1A-213ENST00000540022 TROQ12816 1431 aaPredicted RBP29.38■■■□□ 2.29
TNFRSF1A-213ENST00000540022 EHBP1L1Q8N3D4 1523 aa29.37■■■□□ 2.29
TNFRSF1A-213ENST00000540022 TEX14Q8IWB6 1497 aa29.35■■■□□ 2.29
TNFRSF1A-213ENST00000540022 CD109Q6YHK3 1445 aa29.31■■■□□ 2.28
TNFRSF1A-213ENST00000540022 COL17A1Q9UMD9 1497 aaPredicted RBP29.28■■■□□ 2.28
TNFRSF1A-213ENST00000540022 ABCA9Q8IUA7 1624 aa29.26■■■□□ 2.28
TNFRSF1A-213ENST00000540022 KIF14Q15058 1648 aa29.24■■■□□ 2.27
TNFRSF1A-213ENST00000540022 NCOA2Q15596 1464 aa29.24■■■□□ 2.27
TNFRSF1A-213ENST00000540022 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.21■■■□□ 2.27
TNFRSF1A-213ENST00000540022 SUPT6HQ7KZ85 1726 aaKnown RBP29.21■■■□□ 2.27
TNFRSF1A-213ENST00000540022 PHLDB1Q86UU1 1377 aa29.18■■■□□ 2.26
TNFRSF1A-213ENST00000540022 TTC37Q6PGP7 1564 aa29.18■■■□□ 2.26
TNFRSF1A-213ENST00000540022 CCNB3Q8WWL7 1395 aa29.11■■■□□ 2.25
TNFRSF1A-213ENST00000540022 MYOM3Q5VTT5 1437 aa29.08■■■□□ 2.25
TNFRSF1A-213ENST00000540022 GPATCH8Q9UKJ3 1502 aaKnown RBP29.07■■■□□ 2.24
TNFRSF1A-213ENST00000540022 AEBP2Q6ZN18 517 aaPredicted RBP29.06■■■□□ 2.24
TNFRSF1A-213ENST00000540022 ARAP3Q8WWN8 1544 aa29.05■■■□□ 2.24
TNFRSF1A-213ENST00000540022 PLCH2O75038 1416 aa29.02■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms