RNA–Protein interactions for RNA: ENST00000539661.5

RAB40C-205, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 3 BASIC

Gene RAB40C, Length 2,609 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-205ENST00000539661 CFTRP13569 1480 aa24.99■■□□□ 1.59
RAB40C-205ENST00000539661 WDR97A6NE52 1622 aa24.97■■□□□ 1.59
RAB40C-205ENST00000539661 CCER2I3L3R5 266 aa24.96■■□□□ 1.59
RAB40C-205ENST00000539661 NEFLP07196 543 aa24.95■■□□□ 1.58
RAB40C-205ENST00000539661 PPP1R15AO75807 674 aaPredicted RBP24.93■■□□□ 1.58
RAB40C-205ENST00000539661 ITGAEP38570 1179 aa24.92■■□□□ 1.58
RAB40C-205ENST00000539661 BCANQ96GW7 911 aa24.92■■□□□ 1.58
RAB40C-205ENST00000539661 DDX10Q13206 875 aaKnown RBP24.91■■□□□ 1.58
RAB40C-205ENST00000539661 LRRC9Q6ZRR7 1453 aa24.88■■□□□ 1.57
RAB40C-205ENST00000539661 BCL11AQ9H165 835 aa24.88■■□□□ 1.57
RAB40C-205ENST00000539661 NESP48681 1621 aa24.87■■□□□ 1.57
RAB40C-205ENST00000539661 RBM19Q9Y4C8 960 aaKnown RBP24.86■■□□□ 1.57
RAB40C-205ENST00000539661 CADPSQ9ULU8 1353 aa24.85■■□□□ 1.57
RAB40C-205ENST00000539661 CFAP43Q8NDM7 1665 aa24.81■■□□□ 1.56
RAB40C-205ENST00000539661 ANP32CO43423 234 aa24.8■■□□□ 1.56
RAB40C-205ENST00000539661 PHLDB1Q86UU1 1377 aa24.79■■□□□ 1.56
RAB40C-205ENST00000539661 PRDM2Q13029 1718 aa24.78■■□□□ 1.56
RAB40C-205ENST00000539661 SIN3AQ96ST3 1273 aa24.78■■□□□ 1.56
RAB40C-205ENST00000539661 FHAD1B1AJZ9 1412 aa24.77■■□□□ 1.56
RAB40C-205ENST00000539661 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.74■■□□□ 1.551e-6■■■□□ 17.3
RAB40C-205ENST00000539661 IGF1RP08069 1367 aa24.74■■□□□ 1.55
RAB40C-205ENST00000539661 FAM50AQ14320 339 aaKnown RBP24.67■■□□□ 1.54
RAB40C-205ENST00000539661 TRIM52Q96A61 297 aa24.67■■□□□ 1.54
RAB40C-205ENST00000539661 FGD5Q6ZNL6 1462 aa24.66■■□□□ 1.54
RAB40C-205ENST00000539661 FANCD2Q9BXW9 1451 aa24.65■■□□□ 1.54
RAB40C-205ENST00000539661 PCF11O94913 1555 aaKnown RBP24.64■■□□□ 1.54
RAB40C-205ENST00000539661 CARMIL1Q5VZK9 1371 aa24.64■■□□□ 1.54
RAB40C-205ENST00000539661 RAD54L2Q9Y4B4 1467 aa24.63■■□□□ 1.53
RAB40C-205ENST00000539661 FANCIQ9NVI1 1328 aa24.62■■□□□ 1.53
RAB40C-205ENST00000539661 P3H3Q8IVL6 736 aa24.6■■□□□ 1.53
RAB40C-205ENST00000539661 FYCO1Q9BQS8 1478 aa24.58■■□□□ 1.53
RAB40C-205ENST00000539661 TONSLQ96HA7 1378 aa24.57■■□□□ 1.52
RAB40C-205ENST00000539661 AQRO60306 1485 aaKnown RBP eCLIP24.56■■□□□ 1.522e-6■■■■■ 26.9
RAB40C-205ENST00000539661 ERICH6BQ5W0A0 696 aa24.54■■□□□ 1.52
RAB40C-205ENST00000539661 MSH5O43196 834 aa24.53■■□□□ 1.52
RAB40C-205ENST00000539661 HIRIP3Q9BW71 556 aaPredicted RBP24.53■■□□□ 1.52
RAB40C-205ENST00000539661 EFCAB5A4FU69 1503 aa24.53■■□□□ 1.52
RAB40C-205ENST00000539661 CASKIN1Q8WXD9 1431 aa24.51■■□□□ 1.51
RAB40C-205ENST00000539661 UACAQ9BZF9 1416 aa24.51■■□□□ 1.51
RAB40C-205ENST00000539661 CDK11AQ9UQ88 783 aaPredicted RBP24.5■■□□□ 1.51
RAB40C-205ENST00000539661 CCDC18Q5T9S5 1454 aa24.49■■□□□ 1.51
RAB40C-205ENST00000539661 HFM1A2PYH4 1435 aa24.47■■□□□ 1.51
RAB40C-205ENST00000539661 FGD6Q6ZV73 1430 aa24.46■■□□□ 1.51
RAB40C-205ENST00000539661 PTPN23Q9H3S7 1636 aa24.43■■□□□ 1.5
RAB40C-205ENST00000539661 POLA1P09884 1462 aaPredicted RBP24.42■■□□□ 1.5
RAB40C-205ENST00000539661 MYT1LQ9UL68 1186 aa24.42■■□□□ 1.5
RAB40C-205ENST00000539661 ATP1B4Q9UN42 357 aaPredicted RBP24.42■■□□□ 1.5
RAB40C-205ENST00000539661 TOPBP1Q92547 1522 aa24.42■■□□□ 1.5
RAB40C-205ENST00000539661 HNRNPUQ00839 825 aaKnown RBP eCLIP24.42■■□□□ 1.5
RAB40C-205ENST00000539661 TDRD9Q8NDG6 1382 aaKnown RBP24.41■■□□□ 1.5
RAB40C-205ENST00000539661 KDM5BQ9UGL1 1544 aa24.39■■□□□ 1.5
RAB40C-205ENST00000539661 FHOD3Q2V2M9 1422 aa24.39■■□□□ 1.5
RAB40C-205ENST00000539661 ERICH6Q7L0X2 663 aa24.38■■□□□ 1.49
RAB40C-205ENST00000539661 LAMC3Q9Y6N6 1575 aa24.38■■□□□ 1.49
RAB40C-205ENST00000539661 URB2Q14146 1524 aaKnown RBP24.37■■□□□ 1.49
RAB40C-205ENST00000539661 FMN1Q68DA7 1419 aa24.35■■□□□ 1.49
RAB40C-205ENST00000539661 PPP4R2Q9NY27 417 aa24.34■■□□□ 1.49
RAB40C-205ENST00000539661 CTTNBP2Q8WZ74 1663 aa24.33■■□□□ 1.49
RAB40C-205ENST00000539661 NAIPQ13075 1403 aa24.32■■□□□ 1.48
RAB40C-205ENST00000539661 DNMBPQ6XZF7 1577 aa24.32■■□□□ 1.48
RAB40C-205ENST00000539661 NCOA2Q15596 1464 aa24.32■■□□□ 1.48
RAB40C-205ENST00000539661 PTPRKQ15262 1439 aa24.31■■□□□ 1.48
RAB40C-205ENST00000539661 CUL7Q14999 1698 aa24.3■■□□□ 1.48
RAB40C-205ENST00000539661 SNAPC4Q5SXM2 1469 aa24.29■■□□□ 1.48
RAB40C-205ENST00000539661 WASHC2AQ641Q2 1341 aa24.26■■□□□ 1.47
RAB40C-205ENST00000539661 MTUS2Q5JR59 1369 aa24.25■■□□□ 1.47
RAB40C-205ENST00000539661 CNTLNQ9NXG0 1405 aa24.25■■□□□ 1.47
RAB40C-205ENST00000539661 ABCA10Q8WWZ4 1543 aa24.25■■□□□ 1.47
RAB40C-205ENST00000539661 MYOM3Q5VTT5 1437 aa24.25■■□□□ 1.47
RAB40C-205ENST00000539661 IRX6P78412 446 aaPredicted RBP24.24■■□□□ 1.47
RAB40C-205ENST00000539661 THOC2Q8NI27 1593 aaKnown RBP24.23■■□□□ 1.47
RAB40C-205ENST00000539661 KIF21AQ7Z4S6 1674 aa24.22■■□□□ 1.47
RAB40C-205ENST00000539661 PDS5BQ9NTI5 1447 aa24.22■■□□□ 1.47
RAB40C-205ENST00000539661 HECW1Q76N89 1606 aa24.22■■□□□ 1.47
RAB40C-205ENST00000539661 HSPA5P11021 654 aaKnown RBP24.21■■□□□ 1.47
RAB40C-205ENST00000539661 SUPT6HQ7KZ85 1726 aaKnown RBP24.2■■□□□ 1.47
RAB40C-205ENST00000539661 GCC2Q8IWJ2 1684 aa24.19■■□□□ 1.46
RAB40C-205ENST00000539661 EIF4G2P78344 907 aaKnown RBP eCLIP24.18■■□□□ 1.461e-6■■■■□ 25.9
RAB40C-205ENST00000539661 EHBP1L1Q8N3D4 1523 aa24.17■■□□□ 1.46
RAB40C-205ENST00000539661 ZBED9Q6R2W3 1325 aa24.17■■□□□ 1.46
RAB40C-205ENST00000539661 SAMD9Q5K651 1589 aa24.16■■□□□ 1.46
RAB40C-205ENST00000539661 LRRIQ1Q96JM4 1722 aa24.15■■□□□ 1.46
RAB40C-205ENST00000539661 AKNAQ7Z591 1439 aa24.15■■□□□ 1.46
RAB40C-205ENST00000539661 GRIN2BQ13224 1484 aa24.13■■□□□ 1.45
RAB40C-205ENST00000539661 NCOA1Q15788 1441 aa24.12■■□□□ 1.45
RAB40C-205ENST00000539661 ARHGEF11O15085 1522 aa24.12■■□□□ 1.45
RAB40C-205ENST00000539661 UGGT2Q9NYU1 1516 aa24.11■■□□□ 1.45
RAB40C-205ENST00000539661 PRKRIP1Q9H875 184 aaPredicted RBP24.11■■□□□ 1.45
RAB40C-205ENST00000539661 TCOF1Q13428 1488 aaKnown RBP24.1■■□□□ 1.45
RAB40C-205ENST00000539661 DENND4BO75064 1496 aaPredicted RBP24.09■■□□□ 1.45
RAB40C-205ENST00000539661 CCDC7Q96M83 1385 aa24.09■■□□□ 1.45
RAB40C-205ENST00000539661 ARID3CA6NKF2 412 aa24.08■■□□□ 1.44
RAB40C-205ENST00000539661 POLR1AO95602 1720 aaPredicted RBP24.06■■□□□ 1.44
RAB40C-205ENST00000539661 CCDC184Q52MB2 194 aa24.05■■□□□ 1.44
RAB40C-205ENST00000539661 ABCA5Q8WWZ7 1642 aa24.05■■□□□ 1.44
RAB40C-205ENST00000539661 GAPVD1Q14C86 1478 aa24.05■■□□□ 1.44
RAB40C-205ENST00000539661 B4GALNT3Q6L9W6 998 aa24.03■■□□□ 1.44
RAB40C-205ENST00000539661 MRS2Q9HD23 443 aa24.03■■□□□ 1.44
RAB40C-205ENST00000539661 DEKP35659 375 aaKnown RBP24.02■■□□□ 1.44
RAB40C-205ENST00000539661 NOP58Q9Y2X3 529 aaKnown RBP24.01■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms