RNA–Protein interactions for RNA: ENST00000539661.5

RAB40C-205, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 3 BASIC

Gene RAB40C, Length 2,609 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-205ENST00000539661 NISCHQ9Y2I1 1504 aa34.65■■■■□ 3.14
RAB40C-205ENST00000539661 SHROOM4Q9ULL8 1493 aa29.79■■■□□ 2.36
RAB40C-205ENST00000539661 CCDC180Q9P1Z9 1646 aa29.57■■■□□ 2.32
RAB40C-205ENST00000539661 SUPT5HO00267 1087 aaKnown RBP29.56■■■□□ 2.32
RAB40C-205ENST00000539661 HRCP23327 699 aa29.5■■■□□ 2.31
RAB40C-205ENST00000539661 ZCCHC6Q5VYS8 1495 aaKnown RBP29.47■■■□□ 2.31
RAB40C-205ENST00000539661 DCAF8L2P0C7V8 631 aa29.3■■■□□ 2.28
RAB40C-205ENST00000539661 MYO15BQ96JP2 1530 aa29.23■■■□□ 2.27
RAB40C-205ENST00000539661 CHIC1Q5VXU3 224 aa29.19■■■□□ 2.26
RAB40C-205ENST00000539661 PCGF6Q9BYE7 350 aa28.9■■■□□ 2.22
RAB40C-205ENST00000539661 DCAF1Q9Y4B6 1507 aa28.83■■■□□ 2.21
RAB40C-205ENST00000539661 PPARGC1BQ86YN6 1023 aaKnown RBP28.58■■■□□ 2.17
RAB40C-205ENST00000539661 TRIM26Q12899 539 aaPredicted RBP28.33■■■□□ 2.13
RAB40C-205ENST00000539661 LOC105371045A0A1W2PR82 267 aa28.23■■■□□ 2.11
RAB40C-205ENST00000539661 ZEB1P37275 1124 aaPredicted RBP28.12■■■□□ 2.09
RAB40C-205ENST00000539661 PELP1Q8IZL8 1130 aaKnown RBP28.07■■■□□ 2.08
RAB40C-205ENST00000539661 ABCC9O60706 1549 aa28.02■■■□□ 2.08
RAB40C-205ENST00000539661 SCRIBQ14160 1630 aa27.76■■■□□ 2.03
RAB40C-205ENST00000539661 RSF1Q96T23 1441 aaPredicted RBP27.64■■■□□ 2.02
RAB40C-205ENST00000539661 TRIM41Q8WV44 630 aa27.57■■■□□ 2
RAB40C-205ENST00000539661 SCAF1Q9H7N4 1312 aaKnown RBP27.54■■■□□ 2
RAB40C-205ENST00000539661 RB1CC1Q8TDY2 1594 aa27.53■■■□□ 2
RAB40C-205ENST00000539661 NACADO15069 1562 aa27.45■■□□□ 1.99
RAB40C-205ENST00000539661 FAM9AQ8IZU1 332 aaPredicted RBP27.24■■□□□ 1.95
RAB40C-205ENST00000539661 CECR2Q9BXF3 1484 aa27.16■■□□□ 1.94
RAB40C-205ENST00000539661 ACIN1Q9UKV3 1341 aaKnown RBP27.12■■□□□ 1.93
RAB40C-205ENST00000539661 MYT1Q01538 1121 aa26.95■■□□□ 1.91
RAB40C-205ENST00000539661 CCER1Q8TC90 406 aaPredicted RBP26.95■■□□□ 1.91
RAB40C-205ENST00000539661 NEUROD1Q13562 356 aa26.93■■□□□ 1.9
RAB40C-205ENST00000539661 MROH2BQ7Z745 1585 aa26.91■■□□□ 1.9
RAB40C-205ENST00000539661 CENPBP07199 599 aaPredicted RBP26.91■■□□□ 1.9
RAB40C-205ENST00000539661 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.91■■□□□ 1.9
RAB40C-205ENST00000539661 PABPN1Q86U42 306 aaKnown RBP eCLIP26.9■■□□□ 1.9
RAB40C-205ENST00000539661 EHMT2Q96KQ7 1210 aa26.88■■□□□ 1.89
RAB40C-205ENST00000539661 EIF4G1Q04637 1599 aaKnown RBP26.84■■□□□ 1.89
RAB40C-205ENST00000539661 DIEXFQ68CQ4 756 aaKnown RBP26.84■■□□□ 1.89
RAB40C-205ENST00000539661 WRNQ14191 1432 aaPredicted RBP eCLIP26.83■■□□□ 1.89
RAB40C-205ENST00000539661 WIZO95785 1651 aa26.81■■□□□ 1.88
RAB40C-205ENST00000539661 BAZ1AQ9NRL2 1556 aaPredicted RBP26.8■■□□□ 1.88
RAB40C-205ENST00000539661 GTF3C3Q9Y5Q9 886 aa26.75■■□□□ 1.87
RAB40C-205ENST00000539661 UNC13AQ9UPW8 1703 aa26.66■■□□□ 1.86
RAB40C-205ENST00000539661 CEP162Q5TB80 1403 aa26.56■■□□□ 1.84
RAB40C-205ENST00000539661 TNIKQ9UKE5 1360 aa26.53■■□□□ 1.84
RAB40C-205ENST00000539661 ZNF316A6NFI3 1004 aaPredicted RBP26.51■■□□□ 1.83
RAB40C-205ENST00000539661 TOP2AP11388 1531 aaKnown RBP26.47■■□□□ 1.83
RAB40C-205ENST00000539661 EEA1Q15075 1411 aa26.47■■□□□ 1.83
RAB40C-205ENST00000539661 CCDC88BA6NC98 1476 aa26.45■■□□□ 1.82
RAB40C-205ENST00000539661 ABCC8Q09428 1581 aa26.41■■□□□ 1.82
RAB40C-205ENST00000539661 BICRAQ9NZM4 1560 aa26.36■■□□□ 1.81
RAB40C-205ENST00000539661 SMARCA2P51531 1590 aa26.32■■□□□ 1.8
RAB40C-205ENST00000539661 SOGA1O94964 1423 aa26.3■■□□□ 1.8
RAB40C-205ENST00000539661 SMARCA4P51532 1647 aa26.3■■□□□ 1.8
RAB40C-205ENST00000539661 CSRNP3Q8WYN3 585 aa26.25■■□□□ 1.79
RAB40C-205ENST00000539661 GOLGA3Q08378 1498 aa26.25■■□□□ 1.79
RAB40C-205ENST00000539661 TTBK1Q5TCY1 1321 aaPredicted RBP26.24■■□□□ 1.79
RAB40C-205ENST00000539661 UBTFP17480 764 aaKnown RBP26.14■■□□□ 1.78
RAB40C-205ENST00000539661 MIER1Q8N108 512 aa26.12■■□□□ 1.77
RAB40C-205ENST00000539661 RUSC2Q8N2Y8 1516 aa26.11■■□□□ 1.77
RAB40C-205ENST00000539661 YTHDC1Q96MU7 727 aaKnown RBP26.11■■□□□ 1.77
RAB40C-205ENST00000539661 KIF21BO75037 1637 aa26.05■■□□□ 1.76
RAB40C-205ENST00000539661 CEP164Q9UPV0 1460 aa26.04■■□□□ 1.76
RAB40C-205ENST00000539661 CLSPNQ9HAW4 1339 aa26.01■■□□□ 1.75
RAB40C-205ENST00000539661 VPS8Q8N3P4 1428 aa25.94■■□□□ 1.74
RAB40C-205ENST00000539661 CLIP1P30622 1438 aa25.92■■□□□ 1.74
RAB40C-205ENST00000539661 HNRNPUL2Q1KMD3 747 aaKnown RBP25.92■■□□□ 1.74
RAB40C-205ENST00000539661 BAZ1BQ9UIG0 1483 aaKnown RBP25.91■■□□□ 1.74
RAB40C-205ENST00000539661 PEG3Q9GZU2 1588 aa25.84■■□□□ 1.73
RAB40C-205ENST00000539661 ATAD2BQ9ULI0 1458 aa25.8■■□□□ 1.72
RAB40C-205ENST00000539661 SYNJ1O43426 1573 aa25.79■■□□□ 1.72
RAB40C-205ENST00000539661 APLP2Q06481 763 aa25.79■■□□□ 1.72
RAB40C-205ENST00000539661 DHX57Q6P158 1386 aaKnown RBP25.66■■□□□ 1.7
RAB40C-205ENST00000539661 RAPGEF2Q9Y4G8 1499 aa25.65■■□□□ 1.7
RAB40C-205ENST00000539661 SUPT16HQ9Y5B9 1047 aaKnown RBP25.65■■□□□ 1.7
RAB40C-205ENST00000539661 ERICH3Q5RHP9 1530 aa25.53■■□□□ 1.68
RAB40C-205ENST00000539661 CUX2O14529 1486 aa25.5■■□□□ 1.67
RAB40C-205ENST00000539661 TOP2BQ02880 1626 aa25.49■■□□□ 1.67
RAB40C-205ENST00000539661 RANGAP1P46060 587 aaPredicted RBP25.48■■□□□ 1.67
RAB40C-205ENST00000539661 RRBP1Q9P2E9 1410 aaKnown RBP25.47■■□□□ 1.67
RAB40C-205ENST00000539661 ARAP1Q96P48 1450 aa25.44■■□□□ 1.66
RAB40C-205ENST00000539661 TSHZ2Q9NRE2 1034 aa25.41■■□□□ 1.66
RAB40C-205ENST00000539661 BIVM-ERCC5R4GMW8 1640 aa25.41■■□□□ 1.66
RAB40C-205ENST00000539661 PRXQ9BXM0 1461 aa25.4■■□□□ 1.66
RAB40C-205ENST00000539661 NCAPD3P42695 1498 aa25.34■■□□□ 1.65
RAB40C-205ENST00000539661 ANP32EQ9BTT0 268 aa25.34■■□□□ 1.65
RAB40C-205ENST00000539661 HMGXB3Q12766 1538 aa25.33■■□□□ 1.65
RAB40C-205ENST00000539661 KANK4Q5T7N3 995 aaPredicted RBP25.29■■□□□ 1.64
RAB40C-205ENST00000539661 CCNB3Q8WWL7 1395 aa25.27■■□□□ 1.64
RAB40C-205ENST00000539661 MAPKBP1O60336 1514 aa25.15■■□□□ 1.62
RAB40C-205ENST00000539661 DNAJC5BQ9UF47 199 aa25.12■■□□□ 1.61
RAB40C-205ENST00000539661 KIF27Q86VH2 1401 aa25.11■■□□□ 1.61
RAB40C-205ENST00000539661 MAP3K1Q13233 1512 aa25.11■■□□□ 1.61
RAB40C-205ENST00000539661 ARHGAP35Q9NRY4 1499 aa25.1■■□□□ 1.61
RAB40C-205ENST00000539661 RAB3GAP2Q9H2M9 1393 aa25.1■■□□□ 1.61
RAB40C-205ENST00000539661 KCNH8Q96L42 1107 aa25.05■■□□□ 1.6
RAB40C-205ENST00000539661 CC2D2AQ9P2K1 1620 aa25.04■■□□□ 1.6
RAB40C-205ENST00000539661 CUX1P39880 1505 aa25.03■■□□□ 1.6
RAB40C-205ENST00000539661 SETD5Q9C0A6 1442 aa25.02■■□□□ 1.6
RAB40C-205ENST00000539661 TIMELESSQ9UNS1 1208 aa25.01■■□□□ 1.59
RAB40C-205ENST00000539661 TIAM1Q13009 1591 aa25■■□□□ 1.59
RAB40C-205ENST00000539661 FKBP8Q14318 412 aa25■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms