RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 CUL7Q14999 1698 aa19.79■□□□□ 0.76
CLIP1-208ENST00000537004 PRG4Q92954 1404 aaPredicted RBP19.77■□□□□ 0.76
CLIP1-208ENST00000537004 SHROOM2Q13796 1616 aa19.75■□□□□ 0.75
CLIP1-208ENST00000537004 KIAA0586Q9BVV6 1533 aa19.72■□□□□ 0.75
CLIP1-208ENST00000537004 RAPGEF2Q9Y4G8 1499 aa19.68■□□□□ 0.74
CLIP1-208ENST00000537004 TRHP20396 242 aaPredicted RBP19.67■□□□□ 0.74
CLIP1-208ENST00000537004 TTBK1Q5TCY1 1321 aaPredicted RBP19.62■□□□□ 0.73
CLIP1-208ENST00000537004 FAM9AQ8IZU1 332 aaPredicted RBP19.61■□□□□ 0.73
CLIP1-208ENST00000537004 PRXQ9BXM0 1461 aa19.59■□□□□ 0.73
CLIP1-208ENST00000537004 CSRNP3Q8WYN3 585 aa19.59■□□□□ 0.73
CLIP1-208ENST00000537004 IQGAP2Q13576 1575 aa19.57■□□□□ 0.72
CLIP1-208ENST00000537004 PTPRGP23470 1445 aa19.51■□□□□ 0.71
CLIP1-208ENST00000537004 CARMIL2Q6F5E8 1435 aa19.5■□□□□ 0.71
CLIP1-208ENST00000537004 DISP1Q96F81 1524 aa19.5■□□□□ 0.71
CLIP1-208ENST00000537004 TNIKQ9UKE5 1360 aa19.48■□□□□ 0.71
CLIP1-208ENST00000537004 EEA1Q15075 1411 aa19.46■□□□□ 0.71
CLIP1-208ENST00000537004 UGGT2Q9NYU1 1516 aa19.46■□□□□ 0.71
CLIP1-208ENST00000537004 EHMT2Q96KQ7 1210 aa19.44■□□□□ 0.7
CLIP1-208ENST00000537004 ADCY10Q96PN6 1610 aa19.44■□□□□ 0.7
CLIP1-208ENST00000537004 NPM1P06748 294 aaKnown RBP eCLIP19.43■□□□□ 0.7
CLIP1-208ENST00000537004 CTTNBP2Q8WZ74 1663 aa19.4■□□□□ 0.7
CLIP1-208ENST00000537004 RANGAP1P46060 587 aaPredicted RBP19.39■□□□□ 0.69
CLIP1-208ENST00000537004 KIAA0556O60303 1618 aa19.39■□□□□ 0.69
CLIP1-208ENST00000537004 P3H3Q8IVL6 736 aa19.39■□□□□ 0.69
CLIP1-208ENST00000537004 UACAQ9BZF9 1416 aa19.35■□□□□ 0.69
CLIP1-208ENST00000537004 FAM69CQ0P6D2 419 aa19.33■□□□□ 0.68
CLIP1-208ENST00000537004 GOLGA3Q08378 1498 aa19.32■□□□□ 0.68
CLIP1-208ENST00000537004 ABCC2Q92887 1545 aa19.31■□□□□ 0.68
CLIP1-208ENST00000537004 PLB1Q6P1J6 1458 aa19.3■□□□□ 0.68
CLIP1-208ENST00000537004 MAPKBP1O60336 1514 aa19.3■□□□□ 0.68
CLIP1-208ENST00000537004 LOC105371045A0A1W2PR82 267 aa19.3■□□□□ 0.68
CLIP1-208ENST00000537004 UHRF1BP1LA0JNW5 1464 aa19.28■□□□□ 0.68
CLIP1-208ENST00000537004 ABCC10Q5T3U5 1492 aa19.28■□□□□ 0.68
CLIP1-208ENST00000537004 KIF21BO75037 1637 aa19.27■□□□□ 0.67
CLIP1-208ENST00000537004 UBTFP17480 764 aaKnown RBP19.27■□□□□ 0.67
CLIP1-208ENST00000537004 ASXL2Q76L83 1435 aa19.24■□□□□ 0.67
CLIP1-208ENST00000537004 ARID3CA6NKF2 412 aa19.24■□□□□ 0.67
CLIP1-208ENST00000537004 KIF13AQ9H1H9 1805 aa19.24■□□□□ 0.67
CLIP1-208ENST00000537004 KDM5BQ9UGL1 1544 aa19.22■□□□□ 0.67
CLIP1-208ENST00000537004 DIP2BQ9P265 1576 aa19.22■□□□□ 0.67
CLIP1-208ENST00000537004 SAMD9Q5K651 1589 aa19.2■□□□□ 0.66
CLIP1-208ENST00000537004 FHOD3Q2V2M9 1422 aa19.19■□□□□ 0.66
CLIP1-208ENST00000537004 ABCA8O94911 1581 aa19.19■□□□□ 0.66
CLIP1-208ENST00000537004 ZCCHC11Q5TAX3 1644 aaKnown RBP19.16■□□□□ 0.66
CLIP1-208ENST00000537004 KCNH8Q96L42 1107 aa19.12■□□□□ 0.65
CLIP1-208ENST00000537004 EPRSP07814 1512 aaKnown RBP19.1■□□□□ 0.65
CLIP1-208ENST00000537004 ATP10BO94823 1461 aa19.09■□□□□ 0.65
CLIP1-208ENST00000537004 WDR7Q9Y4E6 1490 aa19.09■□□□□ 0.65
CLIP1-208ENST00000537004 TSPOAP1O95153 1857 aa19.07■□□□□ 0.64
CLIP1-208ENST00000537004 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.07■□□□□ 0.64
CLIP1-208ENST00000537004 HNRNPUL2Q1KMD3 747 aaKnown RBP19.07■□□□□ 0.64
CLIP1-208ENST00000537004 EFCAB5A4FU69 1503 aa19.06■□□□□ 0.64
CLIP1-208ENST00000537004 ARHGAP35Q9NRY4 1499 aa19.05■□□□□ 0.64
CLIP1-208ENST00000537004 NUP153P49790 1475 aaKnown RBP19.05■□□□□ 0.64
CLIP1-208ENST00000537004 RAPGEF6Q8TEU7 1601 aa19.04■□□□□ 0.64
CLIP1-208ENST00000537004 GLI2P10070 1586 aa19.04■□□□□ 0.64
CLIP1-208ENST00000537004 ATP1B4Q9UN42 357 aaPredicted RBP19■□□□□ 0.63
CLIP1-208ENST00000537004 PPRC1Q5VV67 1664 aaKnown RBP18.98■□□□□ 0.63
CLIP1-208ENST00000537004 CD109Q6YHK3 1445 aa18.96■□□□□ 0.63
CLIP1-208ENST00000537004 MAP3K4Q9Y6R4 1608 aa18.96■□□□□ 0.63
CLIP1-208ENST00000537004 KDM6BO15054 1643 aa18.94■□□□□ 0.62
CLIP1-208ENST00000537004 COL17A1Q9UMD9 1497 aaPredicted RBP18.93■□□□□ 0.62
CLIP1-208ENST00000537004 FMN1Q68DA7 1419 aa18.93■□□□□ 0.62
CLIP1-208ENST00000537004 CDK13Q14004 1512 aaKnown RBP18.92■□□□□ 0.62
CLIP1-208ENST00000537004 PLEKHD1A6NEE1 506 aa18.92■□□□□ 0.62
CLIP1-208ENST00000537004 CLIP1P30622 1438 aa18.89■□□□□ 0.62
CLIP1-208ENST00000537004 TEX14Q8IWB6 1497 aa18.89■□□□□ 0.61
CLIP1-208ENST00000537004 MAGI3Q5TCQ9 1506 aa18.87■□□□□ 0.61
CLIP1-208ENST00000537004 CFAP43Q8NDM7 1665 aa18.85■□□□□ 0.61
CLIP1-208ENST00000537004 HECW1Q76N89 1606 aa18.82■□□□□ 0.6
CLIP1-208ENST00000537004 ABCA9Q8IUA7 1624 aa18.82■□□□□ 0.6
CLIP1-208ENST00000537004 CEP162Q5TB80 1403 aa18.79■□□□□ 0.6
CLIP1-208ENST00000537004 CASKIN1Q8WXD9 1431 aa18.79■□□□□ 0.6
CLIP1-208ENST00000537004 PCF11O94913 1555 aaKnown RBP18.79■□□□□ 0.6
CLIP1-208ENST00000537004 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.78■□□□□ 0.6
CLIP1-208ENST00000537004 CDK11AQ9UQ88 783 aaPredicted RBP18.77■□□□□ 0.6
CLIP1-208ENST00000537004 RAPGEF3O95398 923 aa18.76■□□□□ 0.59
CLIP1-208ENST00000537004 LRRIQ1Q96JM4 1722 aa18.75■□□□□ 0.59
CLIP1-208ENST00000537004 TTC37Q6PGP7 1564 aa18.75■□□□□ 0.59
CLIP1-208ENST00000537004 AEBP2Q6ZN18 517 aaPredicted RBP18.73■□□□□ 0.59
CLIP1-208ENST00000537004 TROQ12816 1431 aaPredicted RBP18.72■□□□□ 0.59
CLIP1-208ENST00000537004 FYCO1Q9BQS8 1478 aa18.71■□□□□ 0.59
CLIP1-208ENST00000537004 ARAP3Q8WWN8 1544 aa18.71■□□□□ 0.59
CLIP1-208ENST00000537004 NEO1Q92859 1461 aa18.7■□□□□ 0.58
CLIP1-208ENST00000537004 KDM4FA0A1W2PPD8 638 aa18.7■□□□□ 0.58
CLIP1-208ENST00000537004 FANCAO15360 1455 aa18.7■□□□□ 0.58
CLIP1-208ENST00000537004 PCGF6Q9BYE7 350 aa18.69■□□□□ 0.58
CLIP1-208ENST00000537004 KIF14Q15058 1648 aa18.69■□□□□ 0.58
CLIP1-208ENST00000537004 PHLDB1Q86UU1 1377 aa18.68■□□□□ 0.58
CLIP1-208ENST00000537004 CCDC18Q5T9S5 1454 aa18.68■□□□□ 0.58
CLIP1-208ENST00000537004 AKNAQ7Z591 1439 aa18.68■□□□□ 0.58
CLIP1-208ENST00000537004 PLCH2O75038 1416 aa18.67■□□□□ 0.58
CLIP1-208ENST00000537004 EFCAB2Q5VUJ9 269 aa18.61■□□□□ 0.57
CLIP1-208ENST00000537004 DENND4BO75064 1496 aaPredicted RBP18.61■□□□□ 0.57
CLIP1-208ENST00000537004 FRMPD1Q5SYB0 1578 aa18.6■□□□□ 0.57
CLIP1-208ENST00000537004 TRIM26Q12899 539 aaPredicted RBP18.59■□□□□ 0.57
CLIP1-208ENST00000537004 SCAPERQ9BY12 1400 aa18.59■□□□□ 0.57
CLIP1-208ENST00000537004 ADGRL1O94910 1474 aa18.59■□□□□ 0.57
CLIP1-208ENST00000537004 ARHGAP5Q13017 1502 aa18.57■□□□□ 0.56
CLIP1-208ENST00000537004 MTUS2Q5JR59 1369 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms