RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 NISCHQ9Y2I1 1504 aa28.46■■■□□ 2.15
CLIP1-208ENST00000537004 CCDC180Q9P1Z9 1646 aa25.21■■□□□ 1.63
CLIP1-208ENST00000537004 ABCC9O60706 1549 aa25.03■■□□□ 1.6
CLIP1-208ENST00000537004 DCAF8L2P0C7V8 631 aa24.03■■□□□ 1.44
CLIP1-208ENST00000537004 RB1CC1Q8TDY2 1594 aa23.87■■□□□ 1.41
CLIP1-208ENST00000537004 NACADO15069 1562 aa23.8■■□□□ 1.4
CLIP1-208ENST00000537004 ZCCHC6Q5VYS8 1495 aaKnown RBP23.67■■□□□ 1.38
CLIP1-208ENST00000537004 MYO15BQ96JP2 1530 aa23.58■■□□□ 1.37
CLIP1-208ENST00000537004 PABPN1Q86U42 306 aaKnown RBP eCLIP23.45■■□□□ 1.34
CLIP1-208ENST00000537004 DCAF1Q9Y4B6 1507 aa23.45■■□□□ 1.34
CLIP1-208ENST00000537004 UNC13AQ9UPW8 1703 aa23.31■■□□□ 1.32
CLIP1-208ENST00000537004 BICRAQ9NZM4 1560 aa23.22■■□□□ 1.31
CLIP1-208ENST00000537004 DNAJC5BQ9UF47 199 aa23.2■■□□□ 1.3
CLIP1-208ENST00000537004 SCRIBQ14160 1630 aa23.16■■□□□ 1.3
CLIP1-208ENST00000537004 SHROOM4Q9ULL8 1493 aa22.82■■□□□ 1.24
CLIP1-208ENST00000537004 EIF4G1Q04637 1599 aaKnown RBP22.61■■□□□ 1.21
CLIP1-208ENST00000537004 CC2D2AQ9P2K1 1620 aa22.55■■□□□ 1.2
CLIP1-208ENST00000537004 CECR2Q9BXF3 1484 aa22.46■■□□□ 1.19
CLIP1-208ENST00000537004 SMARCA4P51532 1647 aa22.08■■□□□ 1.13
CLIP1-208ENST00000537004 ATAD2BQ9ULI0 1458 aa22.05■■□□□ 1.12
CLIP1-208ENST00000537004 BAZ1AQ9NRL2 1556 aaPredicted RBP22.03■■□□□ 1.12
CLIP1-208ENST00000537004 NCAPD3P42695 1498 aa22.03■■□□□ 1.12
CLIP1-208ENST00000537004 MROH2BQ7Z745 1585 aa21.98■■□□□ 1.11
CLIP1-208ENST00000537004 SMARCA2P51531 1590 aa21.94■■□□□ 1.1
CLIP1-208ENST00000537004 BAZ1BQ9UIG0 1483 aaKnown RBP21.85■■□□□ 1.09
CLIP1-208ENST00000537004 HMGXB3Q12766 1538 aa21.85■■□□□ 1.09
CLIP1-208ENST00000537004 PEG3Q9GZU2 1588 aa21.83■■□□□ 1.09
CLIP1-208ENST00000537004 WIZO95785 1651 aa21.71■■□□□ 1.07
CLIP1-208ENST00000537004 RSF1Q96T23 1441 aaPredicted RBP21.69■■□□□ 1.06
CLIP1-208ENST00000537004 NESP48681 1621 aa21.63■■□□□ 1.05
CLIP1-208ENST00000537004 ERCC6Q03468 1493 aa21.54■■□□□ 1.04
CLIP1-208ENST00000537004 TOP2AP11388 1531 aaKnown RBP21.42■■□□□ 1.02
CLIP1-208ENST00000537004 CADPSQ9ULU8 1353 aa21.42■■□□□ 1.02
CLIP1-208ENST00000537004 LAMC3Q9Y6N6 1575 aa21.41■■□□□ 1.02
CLIP1-208ENST00000537004 PDS5BQ9NTI5 1447 aa21.32■■□□□ 1
CLIP1-208ENST00000537004 CUX2O14529 1486 aa21.28■■□□□ 1
CLIP1-208ENST00000537004 KIF21AQ7Z4S6 1674 aa21.26■□□□□ 0.99
CLIP1-208ENST00000537004 CCDC88BA6NC98 1476 aa21.25■□□□□ 0.99
CLIP1-208ENST00000537004 CFTRP13569 1480 aa21.24■□□□□ 0.99
CLIP1-208ENST00000537004 THOC2Q8NI27 1593 aaKnown RBP21.21■□□□□ 0.99
CLIP1-208ENST00000537004 SUPT5HO00267 1087 aaKnown RBP21.17■□□□□ 0.98
CLIP1-208ENST00000537004 FANCD2Q9BXW9 1451 aa21.17■□□□□ 0.98
CLIP1-208ENST00000537004 CEP164Q9UPV0 1460 aa21.12■□□□□ 0.97
CLIP1-208ENST00000537004 MRC2Q9UBG0 1479 aa21.11■□□□□ 0.97
CLIP1-208ENST00000537004 WDR62O43379 1518 aa21.02■□□□□ 0.96
CLIP1-208ENST00000537004 URB2Q14146 1524 aaKnown RBP20.97■□□□□ 0.95
CLIP1-208ENST00000537004 DNAJC5Q9H3Z4 198 aa20.9■□□□□ 0.94
CLIP1-208ENST00000537004 PRDM2Q13029 1718 aa20.89■□□□□ 0.93
CLIP1-208ENST00000537004 TOPBP1Q92547 1522 aa20.8■□□□□ 0.92
CLIP1-208ENST00000537004 DNMBPQ6XZF7 1577 aa20.71■□□□□ 0.91
CLIP1-208ENST00000537004 ABCC8Q09428 1581 aa20.7■□□□□ 0.9
CLIP1-208ENST00000537004 ZNF608Q9ULD9 1512 aaPredicted RBP20.69■□□□□ 0.9
CLIP1-208ENST00000537004 IFT140Q96RY7 1462 aa20.67■□□□□ 0.9
CLIP1-208ENST00000537004 POLA1P09884 1462 aaPredicted RBP20.63■□□□□ 0.89
CLIP1-208ENST00000537004 CUX1P39880 1505 aa20.61■□□□□ 0.89
CLIP1-208ENST00000537004 RAD54L2Q9Y4B4 1467 aa20.6■□□□□ 0.89
CLIP1-208ENST00000537004 AQRO60306 1485 aaKnown RBP eCLIP20.56■□□□□ 0.88
CLIP1-208ENST00000537004 FGD5Q6ZNL6 1462 aa20.56■□□□□ 0.88
CLIP1-208ENST00000537004 SOGA1O94964 1423 aa20.56■□□□□ 0.88
CLIP1-208ENST00000537004 TARBP1Q13395 1621 aaKnown RBP20.55■□□□□ 0.88
CLIP1-208ENST00000537004 TDRD9Q8NDG6 1382 aaKnown RBP20.52■□□□□ 0.88
CLIP1-208ENST00000537004 EIF4G3O43432 1585 aaKnown RBP20.51■□□□□ 0.87
CLIP1-208ENST00000537004 OSCARQ8IYS5 282 aa20.48■□□□□ 0.87
CLIP1-208ENST00000537004 WRNQ14191 1432 aaPredicted RBP eCLIP20.43■□□□□ 0.86
CLIP1-208ENST00000537004 FBLN2P98095 1184 aa20.39■□□□□ 0.85
CLIP1-208ENST00000537004 SYNJ1O43426 1573 aa20.38■□□□□ 0.85
CLIP1-208ENST00000537004 TOP2BQ02880 1626 aa20.34■□□□□ 0.85
CLIP1-208ENST00000537004 ABCA10Q8WWZ4 1543 aa20.32■□□□□ 0.84
CLIP1-208ENST00000537004 SNAPC4Q5SXM2 1469 aa20.32■□□□□ 0.84
CLIP1-208ENST00000537004 BIVM-ERCC5R4GMW8 1640 aa20.3■□□□□ 0.84
CLIP1-208ENST00000537004 GAPVD1Q14C86 1478 aa20.3■□□□□ 0.84
CLIP1-208ENST00000537004 WDR97A6NE52 1622 aa20.29■□□□□ 0.84
CLIP1-208ENST00000537004 GRIN2BQ13224 1484 aa20.29■□□□□ 0.84
CLIP1-208ENST00000537004 CHMP7Q8WUX9 453 aaPredicted RBP20.26■□□□□ 0.83
CLIP1-208ENST00000537004 CHD1O14646 1710 aa20.24■□□□□ 0.83
CLIP1-208ENST00000537004 TRIM41Q8WV44 630 aa20.23■□□□□ 0.83
CLIP1-208ENST00000537004 ABCA5Q8WWZ7 1642 aa20.22■□□□□ 0.83
CLIP1-208ENST00000537004 MAGI1Q96QZ7 1491 aaPredicted RBP20.22■□□□□ 0.83
CLIP1-208ENST00000537004 SYNJ2O15056 1496 aa20.17■□□□□ 0.82
CLIP1-208ENST00000537004 PBRM1Q86U86 1689 aa20.17■□□□□ 0.82
CLIP1-208ENST00000537004 ARHGEF11O15085 1522 aa20.11■□□□□ 0.81
CLIP1-208ENST00000537004 RIMBP3CA6NJZ7 1639 aa20.1■□□□□ 0.81
CLIP1-208ENST00000537004 RIMBP3BA6NNM3 1639 aa20.1■□□□□ 0.81
CLIP1-208ENST00000537004 RIMBP3Q9UFD9 1639 aa20.1■□□□□ 0.81
CLIP1-208ENST00000537004 ADAMTS12P58397 1594 aa20.05■□□□□ 0.8
CLIP1-208ENST00000537004 ERICH3Q5RHP9 1530 aa20.05■□□□□ 0.8
CLIP1-208ENST00000537004 CLASP1Q7Z460 1538 aa20.04■□□□□ 0.8
CLIP1-208ENST00000537004 GRIN2AQ12879 1464 aa20.04■□□□□ 0.8
CLIP1-208ENST00000537004 FHAD1B1AJZ9 1412 aa20.04■□□□□ 0.8
CLIP1-208ENST00000537004 CYB5RLQ6IPT4 315 aa20.03■□□□□ 0.8
CLIP1-208ENST00000537004 CHIC1Q5VXU3 224 aa20.02■□□□□ 0.8
CLIP1-208ENST00000537004 KIF27Q86VH2 1401 aa20■□□□□ 0.79
CLIP1-208ENST00000537004 IGF1RP08069 1367 aa19.99■□□□□ 0.79
CLIP1-208ENST00000537004 ARAP1Q96P48 1450 aa19.96■□□□□ 0.79
CLIP1-208ENST00000537004 CEP170Q5SW79 1584 aa19.95■□□□□ 0.78
CLIP1-208ENST00000537004 NUP160Q12769 1436 aa19.95■□□□□ 0.78
CLIP1-208ENST00000537004 RUSC2Q8N2Y8 1516 aa19.88■□□□□ 0.77
CLIP1-208ENST00000537004 CARMIL1Q5VZK9 1371 aa19.86■□□□□ 0.77
CLIP1-208ENST00000537004 ERCC6L2Q5T890 1561 aa19.85■□□□□ 0.77
CLIP1-208ENST00000537004 JPH4Q96JJ6 628 aa19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms