RNA–Protein interactions for RNA: ENST00000532540.5

TGFBR3-209, Transcript of transforming growth factor beta receptor 3, humanhuman

TSL 1 (best)

Gene TGFBR3, Length 3,913 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TGFBR3-209ENST00000532540 OSCARQ8IYS5 282 aa9.63□□□□□ -0.87
TGFBR3-209ENST00000532540 EIF5BO60841 1220 aaKnown RBP9.61□□□□□ -0.87
TGFBR3-209ENST00000532540 JPH4Q96JJ6 628 aa9.6□□□□□ -0.87
TGFBR3-209ENST00000532540 TOPBP1Q92547 1522 aa9.59□□□□□ -0.87
TGFBR3-209ENST00000532540 MRC2Q9UBG0 1479 aa9.59□□□□□ -0.87
TGFBR3-209ENST00000532540 CUX1P39880 1505 aa9.58□□□□□ -0.88
TGFBR3-209ENST00000532540 ZNF608Q9ULD9 1512 aaPredicted RBP9.58□□□□□ -0.88
TGFBR3-209ENST00000532540 POLA1P09884 1462 aaPredicted RBP9.58□□□□□ -0.88
TGFBR3-209ENST00000532540 IGF1RP08069 1367 aa9.58□□□□□ -0.88
TGFBR3-209ENST00000532540 SYNJ1O43426 1573 aa9.57□□□□□ -0.88
TGFBR3-209ENST00000532540 CLIP1P30622 1438 aa9.57□□□□□ -0.88
TGFBR3-209ENST00000532540 MIER1Q8N108 512 aa9.57□□□□□ -0.88
TGFBR3-209ENST00000532540 CDK11AQ9UQ88 783 aaPredicted RBP9.57□□□□□ -0.88
TGFBR3-209ENST00000532540 URB2Q14146 1524 aaKnown RBP9.57□□□□□ -0.88
TGFBR3-209ENST00000532540 SLC24A1O60721 1099 aa9.57□□□□□ -0.88
TGFBR3-209ENST00000532540 GAPVD1Q14C86 1478 aa9.57□□□□□ -0.88
TGFBR3-209ENST00000532540 PEG3Q9GZU2 1588 aa9.57□□□□□ -0.88
TGFBR3-209ENST00000532540 CHIC2Q9UKJ5 165 aa9.56□□□□□ -0.88
TGFBR3-209ENST00000532540 RAPGEF2Q9Y4G8 1499 aa9.56□□□□□ -0.88
TGFBR3-209ENST00000532540 SUPT16HQ9Y5B9 1047 aaKnown RBP9.56□□□□□ -0.88
TGFBR3-209ENST00000532540 TSHZ2Q9NRE2 1034 aa9.55□□□□□ -0.88
TGFBR3-209ENST00000532540 SENP3Q9H4L4 574 aaPredicted RBP9.53□□□□□ -0.88
TGFBR3-209ENST00000532540 FKBP8Q14318 412 aa9.53□□□□□ -0.88
TGFBR3-209ENST00000532540 CEP162Q5TB80 1403 aa9.53□□□□□ -0.88
TGFBR3-209ENST00000532540 GOLGA3Q08378 1498 aa9.52□□□□□ -0.88
TGFBR3-209ENST00000532540 GLIPR1L2Q4G1C9 344 aa9.52□□□□□ -0.89
TGFBR3-209ENST00000532540 LAMC3Q9Y6N6 1575 aa9.52□□□□□ -0.89
TGFBR3-209ENST00000532540 PLEKHD1A6NEE1 506 aa9.5□□□□□ -0.89
TGFBR3-209ENST00000532540 TRIM52Q96A61 297 aa9.5□□□□□ -0.89
TGFBR3-209ENST00000532540 FHOD3Q2V2M9 1422 aa9.49□□□□□ -0.89
TGFBR3-209ENST00000532540 MTUS2Q5JR59 1369 aa9.48□□□□□ -0.89
TGFBR3-209ENST00000532540 EEA1Q15075 1411 aa9.48□□□□□ -0.89
TGFBR3-209ENST00000532540 SNAPC4Q5SXM2 1469 aa9.47□□□□□ -0.89
TGFBR3-209ENST00000532540 DEKP35659 375 aaKnown RBP9.47□□□□□ -0.89
TGFBR3-209ENST00000532540 KANK4Q5T7N3 995 aaPredicted RBP9.47□□□□□ -0.89
TGFBR3-209ENST00000532540 NBR1Q14596 966 aa9.45□□□□□ -0.9
TGFBR3-209ENST00000532540 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.45□□□□□ -0.96e-8■■□□□ 12.3
TGFBR3-209ENST00000532540 TNIKQ9UKE5 1360 aa9.45□□□□□ -0.9
TGFBR3-209ENST00000532540 IFT140Q96RY7 1462 aa9.45□□□□□ -0.9
TGFBR3-209ENST00000532540 RBM19Q9Y4C8 960 aaKnown RBP9.44□□□□□ -0.9
TGFBR3-209ENST00000532540 GRIN2BQ13224 1484 aa9.43□□□□□ -0.9
TGFBR3-209ENST00000532540 DNMBPQ6XZF7 1577 aa9.43□□□□□ -0.9
TGFBR3-209ENST00000532540 KIF21AQ7Z4S6 1674 aa9.43□□□□□ -0.9
TGFBR3-209ENST00000532540 RRP7BPQ9NSQ0 103 aa9.42□□□□□ -0.9
TGFBR3-209ENST00000532540 MLECQ14165 292 aa9.41□□□□□ -0.9
TGFBR3-209ENST00000532540 ERICH6BQ5W0A0 696 aa9.41□□□□□ -0.9
TGFBR3-209ENST00000532540 CNGB1Q14028 1251 aaPredicted RBP9.4□□□□□ -0.9
TGFBR3-209ENST00000532540 PTPRGP23470 1445 aa9.4□□□□□ -0.9
TGFBR3-209ENST00000532540 CFDP1Q9UEE9 299 aaPredicted RBP9.4□□□□□ -0.91
TGFBR3-209ENST00000532540 DAXXQ9UER7 740 aaPredicted RBP9.39□□□□□ -0.91
TGFBR3-209ENST00000532540 TOP2BQ02880 1626 aa9.39□□□□□ -0.91
TGFBR3-209ENST00000532540 CARMIL2Q6F5E8 1435 aa9.39□□□□□ -0.91
TGFBR3-209ENST00000532540 ANO8Q9HCE9 1232 aaPredicted RBP9.39□□□□□ -0.91
TGFBR3-209ENST00000532540 RTN4Q9NQC3 1192 aaKnown RBP9.39□□□□□ -0.91
TGFBR3-209ENST00000532540 ARID4BQ4LE39 1312 aaPredicted RBP9.38□□□□□ -0.91
TGFBR3-209ENST00000532540 FHAD1B1AJZ9 1412 aa9.38□□□□□ -0.91
TGFBR3-209ENST00000532540 ANP32AP39687 249 aaKnown RBP9.38□□□□□ -0.91
TGFBR3-209ENST00000532540 PRG4Q92954 1404 aaPredicted RBP9.38□□□□□ -0.91
TGFBR3-209ENST00000532540 THOC2Q8NI27 1593 aaKnown RBP9.38□□□□□ -0.91
TGFBR3-209ENST00000532540 ZNF326Q5BKZ1 582 aaKnown RBP9.37□□□□□ -0.91
TGFBR3-209ENST00000532540 FAM69CQ0P6D2 419 aa9.36□□□□□ -0.91
TGFBR3-209ENST00000532540 CCDC136Q96JN2 1154 aa9.36□□□□□ -0.91
TGFBR3-209ENST00000532540 POLR3GLQ9BT43 218 aa9.35□□□□□ -0.91
TGFBR3-209ENST00000532540 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.35□□□□□ -0.91
TGFBR3-209ENST00000532540 ABCA10Q8WWZ4 1543 aa9.34□□□□□ -0.91
TGFBR3-209ENST00000532540 TSPY4P0CV99 314 aa9.34□□□□□ -0.91
TGFBR3-209ENST00000532540 TSPY10P0CW01 314 aa9.34□□□□□ -0.91
TGFBR3-209ENST00000532540 CHGAP10645 457 aaKnown RBP9.34□□□□□ -0.91
TGFBR3-209ENST00000532540 ESF1Q9H501 851 aaKnown RBP9.32□□□□□ -0.92
TGFBR3-209ENST00000532540 HNRNPMP52272 730 aaKnown RBP eCLIP9.32□□□□□ -0.921e-6■■■□□ 17.2
TGFBR3-209ENST00000532540 ZBTB47Q9UFB7 747 aaPredicted RBP9.3□□□□□ -0.92
TGFBR3-209ENST00000532540 ZNF644Q9H582 1327 aaPredicted RBP9.3□□□□□ -0.92
TGFBR3-209ENST00000532540 PRXQ9BXM0 1461 aa9.28□□□□□ -0.92
TGFBR3-209ENST00000532540 GGT6Q6P531 493 aa9.28□□□□□ -0.92
TGFBR3-209ENST00000532540 SYNJ2O15056 1496 aa9.27□□□□□ -0.92
TGFBR3-209ENST00000532540 GRIN2AQ12879 1464 aa9.27□□□□□ -0.92
TGFBR3-209ENST00000532540 CCNB3Q8WWL7 1395 aa9.27□□□□□ -0.93
TGFBR3-209ENST00000532540 ANP32CO43423 234 aa9.27□□□□□ -0.93
TGFBR3-209ENST00000532540 NOP58Q9Y2X3 529 aaKnown RBP9.26□□□□□ -0.93
TGFBR3-209ENST00000532540 VPS8Q8N3P4 1428 aa9.26□□□□□ -0.93
TGFBR3-209ENST00000532540 SALL2Q9Y467 1007 aaPredicted RBP9.25□□□□□ -0.93
TGFBR3-209ENST00000532540 WDR62O43379 1518 aa9.25□□□□□ -0.93
TGFBR3-209ENST00000532540 ARAP1Q96P48 1450 aa9.25□□□□□ -0.93
TGFBR3-209ENST00000532540 FMN1Q68DA7 1419 aa9.24□□□□□ -0.93
TGFBR3-209ENST00000532540 FOXD1Q16676 465 aa9.24□□□□□ -0.93
TGFBR3-209ENST00000532540 PLB1Q6P1J6 1458 aa9.24□□□□□ -0.93
TGFBR3-209ENST00000532540 STAG3Q9UJ98 1225 aa9.24□□□□□ -0.93
TGFBR3-209ENST00000532540 PKNOX2Q96KN3 472 aa9.23□□□□□ -0.93
TGFBR3-209ENST00000532540 AFAP1Q8N556 730 aa9.23□□□□□ -0.93
TGFBR3-209ENST00000532540 EIF4G3O43432 1585 aaKnown RBP9.22□□□□□ -0.93
TGFBR3-209ENST00000532540 RAPGEF3O95398 923 aa9.22□□□□□ -0.93
TGFBR3-209ENST00000532540 RGL3Q3MIN7 710 aa9.22□□□□□ -0.93
TGFBR3-209ENST00000532540 ARHGAP35Q9NRY4 1499 aa9.22□□□□□ -0.93
TGFBR3-209ENST00000532540 UBE2Q2Q8WVN8 375 aa9.22□□□□□ -0.93
TGFBR3-209ENST00000532540 KDM2AQ9Y2K7 1162 aa9.22□□□□□ -0.93
TGFBR3-209ENST00000532540 EFCAB2Q5VUJ9 269 aa9.22□□□□□ -0.93
TGFBR3-209ENST00000532540 MAGI1Q96QZ7 1491 aaPredicted RBP9.22□□□□□ -0.93
TGFBR3-209ENST00000532540 NEFMP07197 916 aa9.21□□□□□ -0.94
TGFBR3-209ENST00000532540 FANCIQ9NVI1 1328 aa9.21□□□□□ -0.94
TGFBR3-209ENST00000532540 PRDM2Q13029 1718 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms